SNP Links for Nucleotide (Select 388596625) - SNP

Select item 14036701821.

rs1403670182 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->T [Show Flanks]
Chromosome:: 11:9090344 (GRCh38)
11:9111892 (GRCh37)
Canonical SPDI:: NC_000011.10:9090344:T:TT
Gene:: SCUBE2 (Varview), MIR5691 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
HGVS:: NC_000011.10:g.9090345dup, NC_000011.9:g.9111892dup, NR_049874.1:n.35dup

Select item 13830634142.

rs1383063414 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 11:9090312 (GRCh38)
11:9111859 (GRCh37)
Canonical SPDI:: NC_000011.10:9090311:G:A
Gene:: SCUBE2 (Varview), MIR5691 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000011.10:g.9090312G>A, NC_000011.9:g.9111859G>A, NR_049874.1:n.68C>T

Select item 13632981383.

rs1363298138 [Homo sapiens]

Variant type:: DELINS
Alleles:: TGTC>- [Show Flanks]
Chromosome:: 11:9090345 (GRCh38)
11:9111892 (GRCh37)
Canonical SPDI:: NC_000011.10:9090339:CTGTCTGTC:CTGTC
Gene:: SCUBE2 (Varview), MIR5691 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: CTGTC=0.000084/1 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000011.10:g.9090341TGTC[1], NC_000011.9:g.9111888TGTC[1], NR_049874.1:n.33ACAG[1]

Select item 13492753424.

rs1349275342 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 11:9090342 (GRCh38)
11:9111889 (GRCh37)
Canonical SPDI:: NC_000011.10:9090341:G:C
Gene:: SCUBE2 (Varview), MIR5691 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0.000011/3 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000011.10:g.9090342G>C, NC_000011.9:g.9111889G>C, NR_049874.1:n.38C>G

Select item 12861830895.

rs1286183089 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 11:9090372 (GRCh38)
11:9111919 (GRCh37)
Canonical SPDI:: NC_000011.10:9090371:G:A
Gene:: SCUBE2 (Varview), MIR5691 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000011/3 (TOPMED)
HGVS:: NC_000011.10:g.9090372G>A, NC_000011.9:g.9111919G>A, NR_049874.1:n.8C>T

Select item 12814712256.

rs1281471225 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 11:9090313 (GRCh38)
11:9111860 (GRCh37)
Canonical SPDI:: NC_000011.10:9090312:G:A
Gene:: SCUBE2 (Varview), MIR5691 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.9090313G>A, NC_000011.9:g.9111860G>A, NR_049874.1:n.67C>T

Select item 11722293077.

rs1172229307 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 11:9090359 (GRCh38)
11:9111906 (GRCh37)
Canonical SPDI:: NC_000011.10:9090358:G:A
Gene:: SCUBE2 (Varview), MIR5691 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000011.10:g.9090359G>A, NC_000011.9:g.9111906G>A, NR_049874.1:n.21C>T

Select item 10460317948.

rs1046031794 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->T [Show Flanks]
Chromosome:: 11:9090346 (GRCh38)
11:9111894 (GRCh37)
Canonical SPDI:: NC_000011.10:9090346:T:TT
Gene:: SCUBE2 (Varview), MIR5691 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: TT=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000011.10:g.9090347dup, NC_000011.9:g.9111894dup, NR_049874.1:n.33dup

Select item 10422384499.

rs1042238449 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G [Show Flanks]
Chromosome:: 11:9090369 (GRCh38)
11:9111916 (GRCh37)
Canonical SPDI:: NC_000011.10:9090368:C:A,NC_000011.10:9090368:C:G
Gene:: SCUBE2 (Varview), MIR5691 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by cluster
HGVS:: NC_000011.10:g.9090369C>A, NC_000011.10:g.9090369C>G, NC_000011.9:g.9111916C>A, NC_000011.9:g.9111916C>G, NR_049874.1:n.11G>T, NR_049874.1:n.11G>C

Select item 91587599910.

rs915875999 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 11:9090324 (GRCh38)
11:9111871 (GRCh37)
Canonical SPDI:: NC_000011.10:9090323:T:C
Gene:: SCUBE2 (Varview), MIR5691 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000011/3 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000011.10:g.9090324T>C, NC_000011.9:g.9111871T>C, NR_049874.1:n.56A>G

Select item 76805185911.

rs768051859 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:9090337 (GRCh38)
11:9111884 (GRCh37)
Canonical SPDI:: NC_000011.10:9090336:C:T
Gene:: SCUBE2 (Varview), MIR5691 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by cluster
HGVS:: NC_000011.10:g.9090337C>T, NC_000011.9:g.9111884C>T, NR_049874.1:n.43G>A

Select item 57233512912.

rs572335129 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,C,G [Show Flanks]
Chromosome:: 11:9090341 (GRCh38)
11:9111888 (GRCh37)
Canonical SPDI:: NC_000011.10:9090340:T:A,NC_000011.10:9090340:T:C,NC_000011.10:9090340:T:G
Gene:: SCUBE2 (Varview), MIR5691 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
A=0.00016/1 (1000Genomes)
A=0.00026/1 (ALSPAC)
A=0.00081/3 (TWINSUK)
A=0.00134/6 (Estonian)
T=0.5/1 (SGDP_PRJ)
HGVS:: NC_000011.10:g.9090341T>A, NC_000011.10:g.9090341T>C, NC_000011.10:g.9090341T>G, NC_000011.9:g.9111888T>A, NC_000011.9:g.9111888T>C, NC_000011.9:g.9111888T>G, NR_049874.1:n.39A>T, NR_049874.1:n.39A>G, NR_049874.1:n.39A>C

Select item 55480449413.

rs554804494 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 11:9090361 (GRCh38)
11:9111908 (GRCh37)
Canonical SPDI:: NC_000011.10:9090360:G:A,NC_000011.10:9090360:G:C
Gene:: SCUBE2 (Varview), MIR5691 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
A=0.000156/1 (1000Genomes)
HGVS:: NC_000011.10:g.9090361G>A, NC_000011.10:g.9090361G>C, NC_000011.9:g.9111908G>A, NC_000011.9:g.9111908G>C, NR_049874.1:n.19C>T, NR_049874.1:n.19C>G

Select item 11251178614.

rs112511786 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 11:9090358 (GRCh38)
11:9111905 (GRCh37)
Canonical SPDI:: NC_000011.10:9090357:G:A,NC_000011.10:9090357:G:C
Gene:: SCUBE2 (Varview), MIR5691 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0./0 (ExAC)
C=0.012336/1730 (GnomAD)
C=0.013268/3512 (TOPMED)
C=0.013898/70 (1000Genomes)
G=0.5/8 (SGDP_PRJ)
HGVS:: NC_000011.10:g.9090358G>A, NC_000011.10:g.9090358G>C, NC_000011.9:g.9111905G>A, NC_000011.9:g.9111905G>C, NR_049874.1:n.22C>T, NR_049874.1:n.22C>G

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Links from Nucleotide

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