SNP Links for Nucleotide (Select 336391100) - SNP

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Links from Nucleotide

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Select item 14888450651.

rs1488845065 [Homo sapiens]

Variant type:: DELINS
Alleles:: AGAAAGAAAGAGAAAGAAAGAA>- [Show Flanks]
Chromosome:: 1:159976951 (GRCh38)
1:159946741 (GRCh37)
Canonical SPDI:: NC_000001.11:159976938:AGAAAGAAAGAAAGAAAGAAAGAGAAAGAAAGAA:AGAAAGAAAGAA
Gene:: SLAMF9 (Varview), LINC01133 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AGAAAGAAAGAA=0./0 (ALFA)
-=0.00004/0 (TOMMO)
-=0.00332/16 (GnomAD)
HGVS:: NC_000001.11:g.159976951_159976972del, NC_000001.10:g.159946741_159946762del, NR_038849.1:n.490_511del

Select item 14862941072.

rs1486294107 has merged into rs139235417 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAGAAAGAAAGA>-,AAGAAAGA,AAGAAAGAAAGAAAGA,AAGAAAGAAAGAAAGAAAGA [Show Flanks]
Chromosome:: 1:159976996 (GRCh38)
1:159946786 (GRCh37)
Canonical SPDI:: NC_000001.11:159976989:GAAAGAAAGAAAGAAAGA:GAAAGA,NC_000001.11:159976989:GAAAGAAAGAAAGAAAGA:GAAAGAAAGAAAGA,NC_000001.11:159976989:GAAAGAAAGAAAGAAAGA:GAAAGAAAGAAAGAAAGAAAGA,NC_000001.11:159976989:GAAAGAAAGAAAGAAAGA:GAAAGAAAGAAAGAAAGAAAGAAAGA
Gene:: SLAMF9 (Varview), LINC01133 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GAAAGAAAGAAAGA=0./0 (ALFA)
-=0.1/4 (GENOME_DK)
-=0.2155/78 (NorthernSweden)
-=0.22/2026 (TOMMO)
GAAA=0.4395/392 (Korea1K)
HGVS:: NC_000001.11:g.159976992AAGA[1], NC_000001.11:g.159976992AAGA[3], NC_000001.11:g.159976992AAGA[5], NC_000001.11:g.159976992AAGA[6], NC_000001.10:g.159946782AAGA[1], NC_000001.10:g.159946782AAGA[3], NC_000001.10:g.159946782AAGA[5], NC_000001.10:g.159946782AAGA[6], NR_038849.1:n.531AAGA[1], NR_038849.1:n.531AAGA[3], NR_038849.1:n.531AAGA[5], NR_038849.1:n.531AAGA[6]

Select item 14847871583.

rs1484787158 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 1:159978703 (GRCh38)
1:159948493 (GRCh37)
Canonical SPDI:: NC_000001.11:159978702:A:G
Gene:: SLAMF9 (Varview), LINC01133 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency
MAF:: G=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.159978703A>G, NC_000001.10:g.159948493A>G, NR_038849.1:n.755A>G

Select item 14847709894.

rs1484770989 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 1:159977005 (GRCh38)
1:159946795 (GRCh37)
Canonical SPDI:: NC_000001.11:159977004:A:G
Gene:: SLAMF9 (Varview), LINC01133 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by cluster
MAF:: G=0.00011/3 (TOMMO)
HGVS:: NC_000001.11:g.159977005A>G, NC_000001.10:g.159946795A>G, NR_038849.1:n.544A>G

Select item 14841067665.

rs1484106766 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:159976824 (GRCh38)
1:159946614 (GRCh37)
Canonical SPDI:: NC_000001.11:159976823:C:T
Gene:: SLAMF9 (Varview), LINC01133 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.001566/7 (ALFA)
T=0.000022/3 (GnomAD)
T=0.001339/6 (Estonian)
HGVS:: NC_000001.11:g.159976824C>T, NC_000001.10:g.159946614C>T, NR_038849.1:n.363C>T

Select item 14809938286.

rs1480993828 [Homo sapiens]

Variant type:: DELINS
Alleles:: GA>- [Show Flanks]
Chromosome:: 1:159976944 (GRCh38)
1:159946734 (GRCh37)
Canonical SPDI:: NC_000001.11:159976942:AGA:A
Gene:: SLAMF9 (Varview), LINC01133 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
-=0.00081/4 (GnomAD)
HGVS:: NC_000001.11:g.159976944_159976945del, NC_000001.10:g.159946734_159946735del, NR_038849.1:n.483_484del

Select item 14802471547.

rs1480247154 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 1:159961307 (GRCh38)
1:159931097 (GRCh37)
Canonical SPDI:: NC_000001.11:159961306:G:A,NC_000001.11:159961306:G:T
Gene:: SLAMF9 (Varview), LINC01133 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000001.11:g.159961307G>A, NC_000001.11:g.159961307G>T, NC_000001.10:g.159931097G>A, NC_000001.10:g.159931097G>T, NR_038849.1:n.84G>A, NR_038849.1:n.84G>T

Select item 14741644138.

rs1474164413 [Homo sapiens]

Variant type:: DELINS
Alleles:: AGAAAGAAAGAAAGAGAAAGAAAGAAGGAAAGAA>- [Show Flanks]
Chromosome:: 1:159976947 (GRCh38)
1:159946737 (GRCh37)
Canonical SPDI:: NC_000001.11:159976939:GAAAGAAAGAAAGAAAGAAAGAGAAAGAAAGAAGGAAAGAA:GAAAGAA
Gene:: SLAMF9 (Varview), LINC01133 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: GAAAGAA=0./0 (ALFA)
HGVS:: NC_000001.11:g.159976947_159976980del, NC_000001.10:g.159946737_159946770del, NR_038849.1:n.486_519del

Select item 14740444089.

rs1474044408 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 1:159961298 (GRCh38)
1:159931088 (GRCh37)
Canonical SPDI:: NC_000001.11:159961297:T:A
Gene:: SLAMF9 (Varview), LINC01133 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.159961298T>A, NC_000001.10:g.159931088T>A, NR_038849.1:n.75T>A

Select item 147383390310.

rs1473833903 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:159976645 (GRCh38)
1:159946435 (GRCh37)
Canonical SPDI:: NC_000001.11:159976644:G:A
Gene:: SLAMF9 (Varview), LINC01133 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000011/3 (TOPMED)
HGVS:: NC_000001.11:g.159976645G>A, NC_000001.10:g.159946435G>A, NR_038849.1:n.184G>A

Select item 147364641911.

rs1473646419 has merged into rs1258051367 [Homo sapiens]

Variant type:: DELINS
Alleles:: A>-,AA,AAA [Show Flanks]
Chromosome:: 1:159976921 (GRCh38)
1:159946711 (GRCh37)
Canonical SPDI:: NC_000001.11:159976920:AAA:AA,NC_000001.11:159976920:AAA:AAAA,NC_000001.11:159976920:AAA:AAAAA
Gene:: SLAMF9 (Varview), LINC01133 (Varview)
Functional Consequence:: non_coding_transcript_variant,genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAA=0./0 (ALFA)
-=0.00167/1 (GnomAD)
HGVS:: NC_000001.11:g.159976923del, NC_000001.11:g.159976923dup, NC_000001.11:g.159976922_159976923dup, NC_000001.10:g.159946713del, NC_000001.10:g.159946713dup, NC_000001.10:g.159946712_159946713dup, NR_038849.1:n.462del, NR_038849.1:n.462dup, NR_038849.1:n.461_462dup

Select item 147253791912.

rs1472537919 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:159978748 (GRCh38)
1:159948538 (GRCh37)
Canonical SPDI:: NC_000001.11:159978747:C:T
Gene:: SLAMF9 (Varview), LINC01133 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0.000071/1 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000001.11:g.159978748C>T, NC_000001.10:g.159948538C>T, NR_038849.1:n.800C>T

Select item 147100156613.

rs1471001566 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 1:159961391 (GRCh38)
1:159931181 (GRCh37)
Canonical SPDI:: NC_000001.11:159961390:A:G
Gene:: SLAMF9 (Varview), LINC01133 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency,by cluster
MAF:: G=0.0055/10 (Korea1K)
HGVS:: NC_000001.11:g.159961391A>G, NC_000001.10:g.159931181A>G, NR_038849.1:n.168A>G

Select item 147000953914.

rs1470009539 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 1:159976944 (GRCh38)
1:159946734 (GRCh37)
Canonical SPDI:: NC_000001.11:159976943:G:A,NC_000001.11:159976943:G:T
Gene:: SLAMF9 (Varview), LINC01133 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0.00025/3 (ALFA)
HGVS:: NC_000001.11:g.159976944G>A, NC_000001.11:g.159976944G>T, NC_000001.10:g.159946734G>A, NC_000001.10:g.159946734G>T, NR_038849.1:n.483G>A, NR_038849.1:n.483G>T

Select item 146906067315.

rs1469060673 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 1:159976859 (GRCh38)
1:159946649 (GRCh37)
Canonical SPDI:: NC_000001.11:159976858:A:G
Gene:: SLAMF9 (Varview), LINC01133 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000011/3 (TOPMED)
HGVS:: NC_000001.11:g.159976859A>G, NC_000001.10:g.159946649A>G, NR_038849.1:n.398A>G

Select item 146772179416.

rs1467721794 has merged into rs1250722837 [Homo sapiens]

Variant type:: DELINS
Alleles:: A>-,AA [Show Flanks]
Chromosome:: 1:159976881 (GRCh38)
1:159946671 (GRCh37)
Canonical SPDI:: NC_000001.11:159976880:AAAAAAAAA:AAAAAAAA,NC_000001.11:159976880:AAAAAAAAA:AAAAAAAAAA
Gene:: SLAMF9 (Varview), LINC01133 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAA=0./0 (ALFA)
-=0.00218/4 (Korea1K)
HGVS:: NC_000001.11:g.159976889del, NC_000001.11:g.159976889dup, NC_000001.10:g.159946679del, NC_000001.10:g.159946679dup, NR_038849.1:n.428del, NR_038849.1:n.428dup

Select item 146741007917.

rs1467410079 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 1:159976958 (GRCh38)
1:159946748 (GRCh37)
Canonical SPDI:: NC_000001.11:159976957:A:G
Gene:: SLAMF9 (Varview), LINC01133 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000001.11:g.159976958A>G, NC_000001.10:g.159946748A>G, NR_038849.1:n.497A>G

Select item 146296777818.

rs1462967778 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 1:159978737 (GRCh38)
1:159948527 (GRCh37)
Canonical SPDI:: NC_000001.11:159978736:T:G
Gene:: SLAMF9 (Varview), LINC01133 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.159978737T>G, NC_000001.10:g.159948527T>G, NR_038849.1:n.789T>G

Select item 146167693219.

rs1461676932 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 1:159977017 (GRCh38)
1:159946807 (GRCh37)
Canonical SPDI:: NC_000001.11:159977016:A:G
Gene:: SLAMF9 (Varview), LINC01133 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000001.11:g.159977017A>G, NC_000001.10:g.159946807A>G, NR_038849.1:n.556A>G

Select item 145995944720.

rs1459959447 [Homo sapiens]

Variant type:: DEL
Alleles:: C>- [Show Flanks]
Chromosome:: 1:159961387 (GRCh38)
1:159931177 (GRCh37)
Canonical SPDI:: NC_000001.11:159961386:C:
Gene:: SLAMF9 (Varview), LINC01133 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: -=0.000071/1 (ALFA)
-=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.159961387del, NC_000001.10:g.159931177del, NR_038849.1:n.164del