SNP Links for Nucleotide (Select 319996643) - SNP

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Links from Nucleotide

Items: 20

Select item 14238226441.

rs1423822644 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:24986987 (GRCh38)
15:25232134 (GRCh37)
Canonical SPDI:: NC_000015.10:24986986:C:T
Gene:: PWAR5 (Varview), SNORD108 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000004/1 (GnomAD_exomes)
T=0.000014/2 (GnomAD)
T=0.000023/6 (TOPMED)
HGVS:: NC_000015.10:g.24986987C>T, NC_000015.9:g.25232134C>T, NG_002690.1:g.206078C>T, NR_001292.2:n.63C>T, NR_022008.1:n.2128C>T

Select item 14126395312.

rs1412639531 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 15:24986985 (GRCh38)
15:25232132 (GRCh37)
Canonical SPDI:: NC_000015.10:24986984:A:G
Gene:: PWAR5 (Varview), SNORD108 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0.000094/1 (ALFA)
G=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000015.10:g.24986985A>G, NC_000015.9:g.25232132A>G, NG_002690.1:g.206076A>G, NR_001292.2:n.61A>G, NR_022008.1:n.2126A>G

Select item 13593279723.

rs1359327972 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 15:24986944 (GRCh38)
15:25232091 (GRCh37)
Canonical SPDI:: NC_000015.10:24986943:T:C
Gene:: PWAR5 (Varview), SNORD108 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (GnomAD_exomes)
C=0.000007/1 (GnomAD)
C=0.000008/2 (TOPMED)
HGVS:: NC_000015.10:g.24986944T>C, NC_000015.9:g.25232091T>C, NG_002690.1:g.206035T>C, NR_001292.2:n.20T>C, NR_022008.1:n.2085T>C

Select item 13548161944.

rs1354816194 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 15:24986937 (GRCh38)
15:25232084 (GRCh37)
Canonical SPDI:: NC_000015.10:24986936:G:A
Gene:: PWAR5 (Varview), SNORD108 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000015.10:g.24986937G>A, NC_000015.9:g.25232084G>A, NG_002690.1:g.206028G>A, NR_001292.2:n.13G>A, NR_022008.1:n.2078G>A

Select item 13352044645.

rs1335204464 [Homo sapiens]

Variant type:: DELINS
Alleles:: C>- [Show Flanks]
Chromosome:: 15:24986969 (GRCh38)
15:25232116 (GRCh37)
Canonical SPDI:: NC_000015.10:24986968:CC:C
Gene:: PWAR5 (Varview), SNORD108 (Varview), SNHG14 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CC=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000015.10:g.24986970del, NC_000015.9:g.25232117del, NG_002690.1:g.206061del, NR_001292.2:n.46del, NR_022008.1:n.2111del

Select item 12821820766.

rs1282182076 [Homo sapiens]

Variant type:: DELINS
Alleles:: A>- [Show Flanks]
Chromosome:: 15:24986938 (GRCh38)
15:25232085 (GRCh37)
Canonical SPDI:: NC_000015.10:24986937:AA:A
Gene:: PWAR5 (Varview), SNORD108 (Varview), SNHG14 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: AA=0./0 (ALFA)
-=0.000008/2 (TOPMED)
HGVS:: NC_000015.10:g.24986939del, NC_000015.9:g.25232086del, NG_002690.1:g.206030del, NR_001292.2:n.15del, NR_022008.1:n.2080del

Select item 12799545837.

rs1279954583 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAT>- [Show Flanks]
Chromosome:: 15:24986929 (GRCh38)
15:25232076 (GRCh37)
Canonical SPDI:: NC_000015.10:24986927:TAAT:T
Gene:: PWAR5 (Varview), SNORD108 (Varview), SNHG14 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.24986929_24986931del, NC_000015.9:g.25232076_25232078del, NG_002690.1:g.206020_206022del, NR_001292.2:n.5_7del, NR_022008.1:n.2070_2072del

Select item 11724376748.

rs1172437674 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 15:24986946 (GRCh38)
15:25232093 (GRCh37)
Canonical SPDI:: NC_000015.10:24986945:T:C
Gene:: PWAR5 (Varview), SNORD108 (Varview), SNHG14 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.24986946T>C, NC_000015.9:g.25232093T>C, NG_002690.1:g.206037T>C, NR_001292.2:n.22T>C, NR_022008.1:n.2087T>C

Select item 10473429349.

rs1047342934 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 15:24986984 (GRCh38)
15:25232131 (GRCh37)
Canonical SPDI:: NC_000015.10:24986983:G:C
Gene:: PWAR5 (Varview), SNORD108 (Varview), SNHG14 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
HGVS:: NC_000015.10:g.24986984G>C, NC_000015.9:g.25232131G>C, NG_002690.1:g.206075G>C, NR_001292.2:n.60G>C, NR_022008.1:n.2125G>C

Select item 101918562510.

rs1019185625 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 15:24986943 (GRCh38)
15:25232090 (GRCh37)
Canonical SPDI:: NC_000015.10:24986942:T:A
Gene:: PWAR5 (Varview), SNORD108 (Varview), SNHG14 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.24986943T>A, NC_000015.9:g.25232090T>A, NG_002690.1:g.206034T>A, NR_001292.2:n.19T>A, NR_022008.1:n.2084T>A

Select item 77948220111.

rs779482201 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 15:24986930 (GRCh38)
15:25232077 (GRCh37)
Canonical SPDI:: NC_000015.10:24986929:A:G
Gene:: PWAR5 (Varview), SNORD108 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (GnomAD_exomes)
G=0.000004/1 (TOPMED)
G=0.000009/1 (ExAC)
G=0.000156/1 (1000Genomes)
G=0.000342/1 (KOREAN)
HGVS:: NC_000015.10:g.24986930A>G, NC_000015.9:g.25232077A>G, NG_002690.1:g.206021A>G, NR_001292.2:n.6A>G, NR_022008.1:n.2071A>G

Select item 77697394412.

rs776973944 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 15:24986968 (GRCh38)
15:25232115 (GRCh37)
Canonical SPDI:: NC_000015.10:24986967:T:C
Gene:: PWAR5 (Varview), SNORD108 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000022/5 (GnomAD_exomes)
C=0.000027/3 (ExAC)
HGVS:: NC_000015.10:g.24986968T>C, NC_000015.9:g.25232115T>C, NG_002690.1:g.206059T>C, NR_001292.2:n.44T>C, NR_022008.1:n.2109T>C

Select item 77134089013.

rs771340890 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 15:24986961 (GRCh38)
15:25232108 (GRCh37)
Canonical SPDI:: NC_000015.10:24986960:G:A
Gene:: PWAR5 (Varview), SNORD108 (Varview), SNHG14 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000066/1 (ALFA)
A=0.000004/1 (GnomAD_exomes)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
A=0.000009/1 (ExAC)
A=0.000223/1 (Estonian)
HGVS:: NC_000015.10:g.24986961G>A, NC_000015.9:g.25232108G>A, NG_002690.1:g.206052G>A, NR_001292.2:n.37G>A, NR_022008.1:n.2102G>A

Select item 77003385814.

rs770033858 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C,T [Show Flanks]
Chromosome:: 15:24986988 (GRCh38)
15:25232135 (GRCh37)
Canonical SPDI:: NC_000015.10:24986987:G:A,NC_000015.10:24986987:G:C,NC_000015.10:24986987:G:T
Gene:: PWAR5 (Varview), SNORD108 (Varview), SNHG14 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
A=0.000021/3 (GnomAD)
A=0.000026/6 (GnomAD_exomes)
A=0.000027/3 (ExAC)
HGVS:: NC_000015.10:g.24986988G>A, NC_000015.10:g.24986988G>C, NC_000015.10:g.24986988G>T, NC_000015.9:g.25232135G>A, NC_000015.9:g.25232135G>C, NC_000015.9:g.25232135G>T, NG_002690.1:g.206079G>A, NG_002690.1:g.206079G>C, NG_002690.1:g.206079G>T, NR_001292.2:n.64G>A, NR_001292.2:n.64G>C, NR_001292.2:n.64G>T, NR_022008.1:n.2129G>A, NR_022008.1:n.2129G>C, NR_022008.1:n.2129G>T

Select item 75885640415.

rs758856404 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 15:24986938 (GRCh38)
15:25232085 (GRCh37)
Canonical SPDI:: NC_000015.10:24986937:A:G
Gene:: PWAR5 (Varview), SNORD108 (Varview), SNHG14 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (GnomAD_exomes)
G=0.000007/1 (GnomAD)
G=0.000008/2 (TOPMED)
G=0.000009/1 (ExAC)
HGVS:: NC_000015.10:g.24986938A>G, NC_000015.9:g.25232085A>G, NG_002690.1:g.206029A>G, NR_001292.2:n.14A>G, NR_022008.1:n.2079A>G

Select item 74877916216.

rs748779162 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 15:24986931 (GRCh38)
15:25232078 (GRCh37)
Canonical SPDI:: NC_000015.10:24986930:T:C
Gene:: PWAR5 (Varview), SNORD108 (Varview), SNHG14 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by cluster
MAF:: C=0.000004/1 (GnomAD_exomes)
C=0.000009/1 (ExAC)
HGVS:: NC_000015.10:g.24986931T>C, NC_000015.9:g.25232078T>C, NG_002690.1:g.206022T>C, NR_001292.2:n.7T>C, NR_022008.1:n.2072T>C

Select item 37115262717.

rs371152627 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 15:24986945 (GRCh38)
15:25232092 (GRCh37)
Canonical SPDI:: NC_000015.10:24986944:A:G
Gene:: PWAR5 (Varview), SNORD108 (Varview), SNHG14 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000009/1 (ExAC)
G=0.000174/1 (GoESP)
HGVS:: NC_000015.10:g.24986945A>G, NC_000015.9:g.25232092A>G, NG_002690.1:g.206036A>G, NR_001292.2:n.21A>G, NR_022008.1:n.2086A>G

Select item 20158673718.

rs201586737 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:24986965 (GRCh38)
15:25232112 (GRCh37)
Canonical SPDI:: NC_000015.10:24986964:C:T
Gene:: PWAR5 (Varview), SNORD108 (Varview), SNHG14 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
HGVS:: NC_000015.10:g.24986965C>T, NC_000015.9:g.25232112C>T, NG_002690.1:g.206056C>T, NR_001292.2:n.41C>T, NR_022008.1:n.2106C>T

Select item 18827053319.

rs188270533 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 15:24986947 (GRCh38)
15:25232094 (GRCh37)
Canonical SPDI:: NC_000015.10:24986946:T:A
Gene:: PWAR5 (Varview), SNORD108 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.003802/106 (ALFA)
A=0.000625/3 (1000Genomes)
A=0.00157/9 (GoESP)
A=0.00258/598 (GnomAD_exomes)
A=0.00299/337 (ExAC)
A=0.002992/792 (TOPMED)
A=0.003223/452 (GnomAD)
A=0.003373/13 (ALSPAC)
A=0.005/3 (NorthernSweden)
A=0.00501/5 (GoNL)
A=0.005124/19 (TWINSUK)
A=0.012277/55 (Estonian)
T=0.5/1 (SGDP_PRJ)
HGVS:: NC_000015.10:g.24986947T>A, NC_000015.9:g.25232094T>A, NG_002690.1:g.206038T>A, NR_001292.2:n.23T>A, NR_022008.1:n.2088T>A

Select item 7579351020.

rs75793510 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,G [Show Flanks]
Chromosome:: 15:24986971 (GRCh38)
15:25232118 (GRCh37)
Canonical SPDI:: NC_000015.10:24986970:A:C,NC_000015.10:24986970:A:G
Gene:: PWAR5 (Varview), SNORD108 (Varview), SNHG14 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000423/10 (ALFA)
G=0.001677/189 (ExAC)
G=0.00463/1 (Qatari)
G=0.007027/35 (1000Genomes)
G=0.009592/55 (GoESP)
A=0.5/2 (SGDP_PRJ)
HGVS:: NC_000015.10:g.24986971A>C, NC_000015.10:g.24986971A>G, NC_000015.9:g.25232118A>C, NC_000015.9:g.25232118A>G, NG_002690.1:g.206062A>C, NG_002690.1:g.206062A>G, NR_001292.2:n.47A>C, NR_001292.2:n.47A>G, NR_022008.1:n.2112A>C, NR_022008.1:n.2112A>G

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SNP Links for Nucleotide (Select 319996643) (20)
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