SNP Links for Nucleotide (Select 318102068) - SNP

Links from Nucleotide

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Select item 14837912021.

rs1483791202 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G,T [Show Flanks]
Chromosome:: 2:233755291 (GRCh38)
2:234663937 (GRCh37)
Canonical SPDI:: NC_000002.12:233755290:C:A,NC_000002.12:233755290:C:G,NC_000002.12:233755290:C:T
Gene:: UGT1A10 (Varview), UGT1A8 (Varview), UGT1A7 (Varview), UGT1A6 (Varview), UGT1A5 (Varview), UGT1A9 (Varview), UGT1A4 (Varview), UGT1A3 (Varview), LOC100286922 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
HGVS:: NC_000002.12:g.233755291C>A, NC_000002.12:g.233755291C>G, NC_000002.12:g.233755291C>T, NC_000002.11:g.234663937C>A, NC_000002.11:g.234663937C>G, NC_000002.11:g.234663937C>T, NG_002601.2:g.170548C>A, NG_002601.2:g.170548C>G, NG_002601.2:g.170548C>T, NG_033238.1:g.19C>A, NG_033238.1:g.19C>G, NG_033238.1:g.19C>T, NR_037694.1:n.55G>T, NR_037694.1:n.55G>C, NR_037694.1:n.55G>A, NR_037695.1:n.55G>T, NR_037695.1:n.55G>C, NR_037695.1:n.55G>A, NR_037696.1:n.55G>T, NR_037696.1:n.55G>C, NR_037696.1:n.55G>A

Select item 14791894672.

rs1479189467 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 2:233754367 (GRCh38)
2:234663013 (GRCh37)
Canonical SPDI:: NC_000002.12:233754366:T:C
Gene:: UGT1A10 (Varview), UGT1A8 (Varview), UGT1A7 (Varview), UGT1A6 (Varview), UGT1A5 (Varview), UGT1A9 (Varview), UGT1A4 (Varview), UGT1A3 (Varview), LOC100286922 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.00086/14 (ALFA)
C=0.00016/1 (1000Genomes)
HGVS:: NC_000002.12:g.233754367T>C, NC_000002.11:g.234663013T>C, NG_002601.2:g.169624T>C, NR_037694.1:n.979A>G, NR_037695.1:n.764A>G, NR_037696.1:n.627A>G

Select item 14785612083.

rs1478561208 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 2:233755206 (GRCh38)
2:234663852 (GRCh37)
Canonical SPDI:: NC_000002.12:233755205:C:T
Gene:: UGT1A10 (Varview), UGT1A8 (Varview), UGT1A7 (Varview), UGT1A6 (Varview), UGT1A5 (Varview), UGT1A9 (Varview), UGT1A4 (Varview), UGT1A3 (Varview), LOC100286922 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.233755206C>T, NC_000002.11:g.234663852C>T, NG_002601.2:g.170463C>T, NR_037694.1:n.140G>A, NR_037695.1:n.140G>A, NR_037696.1:n.140G>A

Select item 14763256484.

rs1476325648 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 2:233754395 (GRCh38)
2:234663041 (GRCh37)
Canonical SPDI:: NC_000002.12:233754394:C:T
Gene:: UGT1A10 (Varview), UGT1A8 (Varview), UGT1A7 (Varview), UGT1A6 (Varview), UGT1A5 (Varview), UGT1A9 (Varview), UGT1A4 (Varview), UGT1A3 (Varview), LOC100286922 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000002.12:g.233754395C>T, NC_000002.11:g.234663041C>T, NG_002601.2:g.169652C>T, NR_037694.1:n.951G>A, NR_037695.1:n.736G>A, NR_037696.1:n.599G>A

Select item 14752717405.

rs1475271740 [Homo sapiens]

Variant type:: DELINS
Alleles:: G>- [Show Flanks]
Chromosome:: 2:233755024 (GRCh38)
2:234663670 (GRCh37)
Canonical SPDI:: NC_000002.12:233755023:GGG:GG
Gene:: UGT1A10 (Varview), UGT1A8 (Varview), UGT1A7 (Varview), UGT1A6 (Varview), UGT1A5 (Varview), UGT1A9 (Varview), UGT1A4 (Varview), UGT1A3 (Varview), LOC100286922 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GG=0./0 (ALFA)
-=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.233755026del, NC_000002.11:g.234663672del, NG_002601.2:g.170283del, NR_037694.1:n.322del, NR_037695.1:n.322del

Select item 14732764706.

rs1473276470 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->A [Show Flanks]
Chromosome:: 2:233755215 (GRCh38)
2:234663862 (GRCh37)
Canonical SPDI:: NC_000002.12:233755215:A:AA
Gene:: UGT1A10 (Varview), UGT1A8 (Varview), UGT1A7 (Varview), UGT1A6 (Varview), UGT1A5 (Varview), UGT1A9 (Varview), UGT1A4 (Varview), UGT1A3 (Varview), LOC100286922 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency
MAF:: A=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.233755216dup, NC_000002.11:g.234663862dup, NG_002601.2:g.170473dup, NR_037694.1:n.130dup, NR_037695.1:n.130dup, NR_037696.1:n.130dup

Select item 14686954417.

rs1468695441 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,G,T [Show Flanks]
Chromosome:: 2:233755285 (GRCh38)
2:234663931 (GRCh37)
Canonical SPDI:: NC_000002.12:233755284:A:C,NC_000002.12:233755284:A:G,NC_000002.12:233755284:A:T
Gene:: UGT1A10 (Varview), UGT1A8 (Varview), UGT1A7 (Varview), UGT1A6 (Varview), UGT1A5 (Varview), UGT1A9 (Varview), UGT1A4 (Varview), UGT1A3 (Varview), LOC100286922 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
HGVS:: NC_000002.12:g.233755285A>C, NC_000002.12:g.233755285A>G, NC_000002.12:g.233755285A>T, NC_000002.11:g.234663931A>C, NC_000002.11:g.234663931A>G, NC_000002.11:g.234663931A>T, NG_002601.2:g.170542A>C, NG_002601.2:g.170542A>G, NG_002601.2:g.170542A>T, NG_033238.1:g.13A>C, NG_033238.1:g.13A>G, NG_033238.1:g.13A>T, NR_037694.1:n.61T>G, NR_037694.1:n.61T>C, NR_037694.1:n.61T>A, NR_037695.1:n.61T>G, NR_037695.1:n.61T>C, NR_037695.1:n.61T>A, NR_037696.1:n.61T>G, NR_037696.1:n.61T>C, NR_037696.1:n.61T>A

Select item 14639638268.

rs1463963826 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 2:233754596 (GRCh38)
2:234663242 (GRCh37)
Canonical SPDI:: NC_000002.12:233754595:T:C
Gene:: UGT1A10 (Varview), UGT1A8 (Varview), UGT1A7 (Varview), UGT1A6 (Varview), UGT1A5 (Varview), UGT1A9 (Varview), UGT1A4 (Varview), UGT1A3 (Varview), LOC100286922 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
HGVS:: NC_000002.12:g.233754596T>C, NC_000002.11:g.234663242T>C, NG_002601.2:g.169853T>C, NR_037694.1:n.750A>G, NR_037695.1:n.535A>G, NR_037696.1:n.398A>G

Select item 14576996509.

rs1457699650 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 2:233755317 (GRCh38)
2:234663963 (GRCh37)
Canonical SPDI:: NC_000002.12:233755316:G:C
Gene:: UGT1A10 (Varview), UGT1A8 (Varview), UGT1A7 (Varview), UGT1A6 (Varview), UGT1A5 (Varview), UGT1A9 (Varview), UGT1A4 (Varview), UGT1A3 (Varview), LOC100286922 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.233755317G>C, NC_000002.11:g.234663963G>C, NG_002601.2:g.170574G>C, NG_033238.1:g.45G>C, NR_037694.1:n.29C>G, NR_037695.1:n.29C>G, NR_037696.1:n.29C>G

Select item 145728065910.

rs1457280659 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->GCCC [Show Flanks]
Chromosome:: 2:233755049 (GRCh38)
2:234663696 (GRCh37)
Canonical SPDI:: NC_000002.12:233755049:CCGCCC:CCGCCCGCCC
Gene:: UGT1A10 (Varview), UGT1A8 (Varview), UGT1A7 (Varview), UGT1A6 (Varview), UGT1A5 (Varview), UGT1A9 (Varview), UGT1A4 (Varview), UGT1A3 (Varview), LOC100286922 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency
MAF:: CCGC=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000002.12:g.233755052_233755055dup, NC_000002.11:g.234663698_234663701dup, NG_002601.2:g.170309_170312dup, NR_037694.1:n.293_296dup, NR_037695.1:n.293_296dup

Select item 145531648711.

rs1455316487 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 2:233755015 (GRCh38)
2:234663661 (GRCh37)
Canonical SPDI:: NC_000002.12:233755014:G:C
Gene:: UGT1A10 (Varview), UGT1A8 (Varview), UGT1A7 (Varview), UGT1A6 (Varview), UGT1A5 (Varview), UGT1A9 (Varview), UGT1A4 (Varview), UGT1A3 (Varview), LOC100286922 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000002.12:g.233755015G>C, NC_000002.11:g.234663661G>C, NG_002601.2:g.170272G>C, NR_037694.1:n.331C>G, NR_037695.1:n.331C>G

Select item 145374361612.

rs1453743616 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 2:233754530 (GRCh38)
2:234663176 (GRCh37)
Canonical SPDI:: NC_000002.12:233754529:T:A
Gene:: UGT1A10 (Varview), UGT1A8 (Varview), UGT1A7 (Varview), UGT1A6 (Varview), UGT1A5 (Varview), UGT1A9 (Varview), UGT1A4 (Varview), UGT1A3 (Varview), LOC100286922 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000011/3 (TOPMED)
A=0.000021/3 (GnomAD)
HGVS:: NC_000002.12:g.233754530T>A, NC_000002.11:g.234663176T>A, NG_002601.2:g.169787T>A, NR_037694.1:n.816A>T, NR_037695.1:n.601A>T, NR_037696.1:n.464A>T

Select item 145213434913.

rs1452134349 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 2:233755198 (GRCh38)
2:234663844 (GRCh37)
Canonical SPDI:: NC_000002.12:233755197:G:A
Gene:: UGT1A10 (Varview), UGT1A8 (Varview), UGT1A7 (Varview), UGT1A6 (Varview), UGT1A5 (Varview), UGT1A9 (Varview), UGT1A4 (Varview), UGT1A3 (Varview), LOC100286922 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.233755198G>A, NC_000002.11:g.234663844G>A, NG_002601.2:g.170455G>A, NR_037694.1:n.148C>T, NR_037695.1:n.148C>T, NR_037696.1:n.148C>T

Select item 144884505714.

rs1448845057 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 2:233755199 (GRCh38)
2:234663845 (GRCh37)
Canonical SPDI:: NC_000002.12:233755198:C:A,NC_000002.12:233755198:C:T
Gene:: UGT1A10 (Varview), UGT1A8 (Varview), UGT1A7 (Varview), UGT1A6 (Varview), UGT1A5 (Varview), UGT1A9 (Varview), UGT1A4 (Varview), UGT1A3 (Varview), LOC100286922 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000002.12:g.233755199C>A, NC_000002.12:g.233755199C>T, NC_000002.11:g.234663845C>A, NC_000002.11:g.234663845C>T, NG_002601.2:g.170456C>A, NG_002601.2:g.170456C>T, NR_037694.1:n.147G>T, NR_037694.1:n.147G>A, NR_037695.1:n.147G>T, NR_037695.1:n.147G>A, NR_037696.1:n.147G>T, NR_037696.1:n.147G>A

Select item 144870350715.

rs1448703507 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 2:233754560 (GRCh38)
2:234663206 (GRCh37)
Canonical SPDI:: NC_000002.12:233754559:G:A
Gene:: UGT1A10 (Varview), UGT1A8 (Varview), UGT1A7 (Varview), UGT1A6 (Varview), UGT1A5 (Varview), UGT1A9 (Varview), UGT1A4 (Varview), UGT1A3 (Varview), LOC100286922 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000002.12:g.233754560G>A, NC_000002.11:g.234663206G>A, NG_002601.2:g.169817G>A, NR_037694.1:n.786C>T, NR_037695.1:n.571C>T, NR_037696.1:n.434C>T

Select item 144696533716.

rs1446965337 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C,T [Show Flanks]
Chromosome:: 2:233754712 (GRCh38)
2:234663358 (GRCh37)
Canonical SPDI:: NC_000002.12:233754711:G:A,NC_000002.12:233754711:G:C,NC_000002.12:233754711:G:T
Gene:: UGT1A10 (Varview), UGT1A8 (Varview), UGT1A7 (Varview), UGT1A6 (Varview), UGT1A5 (Varview), UGT1A9 (Varview), UGT1A4 (Varview), UGT1A3 (Varview), LOC100286922 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by cluster
MAF:: A=0.000014/2 (GnomAD_exomes)
C=0.002729/5 (Korea1K)
HGVS:: NC_000002.12:g.233754712G>A, NC_000002.12:g.233754712G>C, NC_000002.12:g.233754712G>T, NC_000002.11:g.234663358G>A, NC_000002.11:g.234663358G>C, NC_000002.11:g.234663358G>T, NG_002601.2:g.169969G>A, NG_002601.2:g.169969G>C, NG_002601.2:g.169969G>T, NR_037694.1:n.634C>T, NR_037694.1:n.634C>G, NR_037694.1:n.634C>A, NR_037695.1:n.419C>T, NR_037695.1:n.419C>G, NR_037695.1:n.419C>A, NR_037696.1:n.282C>T, NR_037696.1:n.282C>G, NR_037696.1:n.282C>A

Select item 144453573917.

rs1444535739 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 2:233754719 (GRCh38)
2:234663365 (GRCh37)
Canonical SPDI:: NC_000002.12:233754718:G:A
Gene:: UGT1A10 (Varview), UGT1A8 (Varview), UGT1A7 (Varview), UGT1A6 (Varview), UGT1A5 (Varview), UGT1A9 (Varview), UGT1A4 (Varview), UGT1A3 (Varview), LOC100286922 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000002.12:g.233754719G>A, NC_000002.11:g.234663365G>A, NG_002601.2:g.169976G>A, NR_037694.1:n.627C>T, NR_037695.1:n.412C>T, NR_037696.1:n.275C>T

Select item 144438013018.

rs1444380130 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 2:233754789 (GRCh38)
2:234663435 (GRCh37)
Canonical SPDI:: NC_000002.12:233754788:A:G
Gene:: UGT1A10 (Varview), UGT1A8 (Varview), UGT1A7 (Varview), UGT1A6 (Varview), UGT1A5 (Varview), UGT1A9 (Varview), UGT1A4 (Varview), UGT1A3 (Varview), LOC100286922 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000006/1 (GnomAD_exomes)
HGVS:: NC_000002.12:g.233754789A>G, NC_000002.11:g.234663435A>G, NG_002601.2:g.170046A>G, NR_037694.1:n.557T>C, NR_037695.1:n.342T>C, NR_037696.1:n.205T>C

Select item 144215075519.

rs1442150755 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 2:233755261 (GRCh38)
2:234663907 (GRCh37)
Canonical SPDI:: NC_000002.12:233755260:G:C
Gene:: UGT1A10 (Varview), UGT1A8 (Varview), UGT1A7 (Varview), UGT1A6 (Varview), UGT1A5 (Varview), UGT1A9 (Varview), UGT1A4 (Varview), UGT1A3 (Varview), LOC100286922 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.233755261G>C, NC_000002.11:g.234663907G>C, NG_002601.2:g.170518G>C, NR_037694.1:n.85C>G, NR_037695.1:n.85C>G, NR_037696.1:n.85C>G

Select item 144209537120.

rs1442095371 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 2:233754743 (GRCh38)
2:234663389 (GRCh37)
Canonical SPDI:: NC_000002.12:233754742:C:A
Gene:: UGT1A10 (Varview), UGT1A8 (Varview), UGT1A7 (Varview), UGT1A6 (Varview), UGT1A5 (Varview), UGT1A9 (Varview), UGT1A4 (Varview), UGT1A3 (Varview), LOC100286922 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000002.12:g.233754743C>A, NC_000002.11:g.234663389C>A, NG_002601.2:g.170000C>A, NR_037694.1:n.603G>T, NR_037695.1:n.388G>T, NR_037696.1:n.251G>T

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