SNP Links for Nucleotide (Select 302488598) - SNP

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Links from Nucleotide

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Select item 14890145271.

rs1489014527 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 19:56494855 (GRCh38)
19:57006224 (GRCh37)
Canonical SPDI:: NC_000019.10:56494854:T:C
Gene:: ZNF667-AS1 (Varview), LOC124904776 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000014/2 (GnomAD)
C=0.00003/8 (TOPMED)
HGVS:: NC_000019.10:g.56494855T>C, NC_000019.9:g.57006224T>C, NR_036521.1:n.1201T>C, NR_036522.1:n.846T>C

Select item 14878051432.

rs1487805143 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 19:56478137 (GRCh38)
19:56989506 (GRCh37)
Canonical SPDI:: NC_000019.10:56478136:T:C
Gene:: ZNF667 (Varview), ZNF667-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000015/4 (TOPMED)
HGVS:: NC_000019.10:g.56478137T>C, NC_000019.9:g.56989506T>C, NR_036521.1:n.264T>C, NR_036522.1:n.14T>C

Select item 14873269743.

rs1487326974 [Homo sapiens]

Variant type:: DELINS
Alleles:: GT>- [Show Flanks]
Chromosome:: 19:56494343 (GRCh38)
19:57005712 (GRCh37)
Canonical SPDI:: NC_000019.10:56494341:TGT:T
Gene:: ZNF667-AS1 (Varview), LOC124904776 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000019.10:g.56494343_56494344del, NC_000019.9:g.57005712_57005713del, NR_036521.1:n.689_690del, NR_036522.1:n.334_335del

Select item 14860599074.

rs1486059907 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->A [Show Flanks]
Chromosome:: 19:56495313 (GRCh38)
19:57006683 (GRCh37)
Canonical SPDI:: NC_000019.10:56495313:AA:AAA
Gene:: ZNF667-AS1 (Varview), LOC124904776 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAA=0./0 (ALFA)
A=0.000011/3 (TOPMED)
A=0.000036/5 (GnomAD)
HGVS:: NC_000019.10:g.56495315dup, NC_000019.9:g.57006684dup, NR_036521.1:n.1661dup, NR_036522.1:n.1306dup, NM_198879.1:c.*196dup

Select item 14843528855.

rs1484352885 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 19:56495005 (GRCh38)
19:57006374 (GRCh37)
Canonical SPDI:: NC_000019.10:56495004:G:A
Gene:: ZNF667-AS1 (Varview), LOC124904776 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.56495005G>A, NC_000019.9:g.57006374G>A, NR_036521.1:n.1351G>A, NR_036522.1:n.996G>A

Select item 14842181536.

rs1484218153 [Homo sapiens]

Variant type:: DEL
Alleles:: AATGCCTCAAGATTT>- [Show Flanks]
Chromosome:: 19:56495137 (GRCh38)
19:57006506 (GRCh37)
Canonical SPDI:: NC_000019.10:56495136:AATGCCTCAAGATTT:
Gene:: ZNF667-AS1 (Varview), LOC124904776 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency
MAF:: -=0.000007/1 (GnomAD_exomes)
HGVS:: NC_000019.10:g.56495137_56495151del, NC_000019.9:g.57006506_57006520del, NR_036521.1:n.1483_1497del, NR_036522.1:n.1128_1142del, NM_198879.1:c.*18_*32del

Select item 14842053167.

rs1484205316 [Homo sapiens]

Variant type:: DELINS
Alleles:: C>- [Show Flanks]
Chromosome:: 19:56478120 (GRCh38)
19:56989489 (GRCh37)
Canonical SPDI:: NC_000019.10:56478119:CC:C
Gene:: ZNF667 (Varview), ZNF667-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,2KB_upstream_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: CC=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000019.10:g.56478121del, NC_000019.9:g.56989490del, NR_036521.1:n.248del

Select item 14834052108.

rs1483405210 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 19:56494577 (GRCh38)
19:57005946 (GRCh37)
Canonical SPDI:: NC_000019.10:56494576:C:T
Gene:: ZNF667-AS1 (Varview), LOC124904776 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000029/4 (GnomAD)
HGVS:: NC_000019.10:g.56494577C>T, NC_000019.9:g.57005946C>T, NR_036521.1:n.923C>T, NR_036522.1:n.568C>T

Select item 14833698329.

rs1483369832 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 19:56494507 (GRCh38)
19:57005876 (GRCh37)
Canonical SPDI:: NC_000019.10:56494506:T:C
Gene:: ZNF667-AS1 (Varview), LOC124904776 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000011/3 (TOPMED)
HGVS:: NC_000019.10:g.56494507T>C, NC_000019.9:g.57005876T>C, NR_036521.1:n.853T>C, NR_036522.1:n.498T>C

Select item 147692772110.

rs1476927721 [Homo sapiens]

Variant type:: INS
Alleles:: ->CAACACGTGTTGTGTTCAACATGTGTTC [Show Flanks]
Chromosome:: 19:56494583 (GRCh38)
19:57005953 (GRCh37)
Canonical SPDI:: NC_000019.10:56494583::CAACACGTGTTGTGTTCAACATGTGTTC
Gene:: ZNF667-AS1 (Varview), LOC124904776 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: CAACACGTGTTGTGTTCAACATGTGTTC=0./0 (ALFA)
CAACACGTGTTGTGTTCAACATGTGTTC=0.000021/3 (GnomAD)
HGVS:: NC_000019.10:g.56494583_56494584insCAACACGTGTTGTGTTCAACATGTGTTC, NC_000019.9:g.57005952_57005953insCAACACGTGTTGTGTTCAACATGTGTTC, NR_036521.1:n.929_930insCAACACGTGTTGTGTTCAACATGTGTTC, NR_036522.1:n.574_575insCAACACGTGTTGTGTTCAACATGTGTTC

Select item 147535593911.

rs1475355939 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 19:56477887 (GRCh38)
19:56989256 (GRCh37)
Canonical SPDI:: NC_000019.10:56477886:G:A,NC_000019.10:56477886:G:T
Gene:: ZNF667 (Varview), ZNF667-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000043/6 (GnomAD)
HGVS:: NC_000019.10:g.56477887G>A, NC_000019.10:g.56477887G>T, NC_000019.9:g.56989256G>A, NC_000019.9:g.56989256G>T, NR_036521.1:n.14G>A, NR_036521.1:n.14G>T

Select item 147206887212.

rs1472068872 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 19:56495224 (GRCh38)
19:57006593 (GRCh37)
Canonical SPDI:: NC_000019.10:56495223:C:T
Gene:: ZNF667-AS1 (Varview), LOC124904776 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000026/7 (TOPMED)
HGVS:: NC_000019.10:g.56495224C>T, NC_000019.9:g.57006593C>T, NR_036521.1:n.1570C>T, NR_036522.1:n.1215C>T, NM_198879.1:c.*105C>T

Select item 146824342213.

rs1468243422 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 19:56494836 (GRCh38)
19:57006205 (GRCh37)
Canonical SPDI:: NC_000019.10:56494835:A:G
Gene:: ZNF667-AS1 (Varview), LOC124904776 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000011/3 (TOPMED)
A=0.5/1 (SGDP_PRJ)
HGVS:: NC_000019.10:g.56494836A>G, NC_000019.9:g.57006205A>G, NR_036521.1:n.1182A>G, NR_036522.1:n.827A>G

Select item 146805887014.

rs1468058870 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 19:56478105 (GRCh38)
19:56989474 (GRCh37)
Canonical SPDI:: NC_000019.10:56478104:G:C
Gene:: ZNF667 (Varview), ZNF667-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,2KB_upstream_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000019.10:g.56478105G>C, NC_000019.9:g.56989474G>C, NR_036521.1:n.232G>C

Select item 146530294415.

rs1465302944 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 19:56494230 (GRCh38)
19:57005599 (GRCh37)
Canonical SPDI:: NC_000019.10:56494229:G:A
Gene:: ZNF667-AS1 (Varview), LOC124904776 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
HGVS:: NC_000019.10:g.56494230G>A, NC_000019.9:g.57005599G>A, NR_036521.1:n.576G>A, NR_036522.1:n.221G>A, NM_198879.1:c.46G>A

Select item 146472430716.

rs1464724307 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 19:56477889 (GRCh38)
19:56989258 (GRCh37)
Canonical SPDI:: NC_000019.10:56477888:G:A
Gene:: ZNF667 (Varview), ZNF667-AS1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,non_coding_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.56477889G>A, NC_000019.9:g.56989258G>A, NR_036521.1:n.16G>A

Select item 146408411817.

rs1464084118 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 19:56494378 (GRCh38)
19:57005747 (GRCh37)
Canonical SPDI:: NC_000019.10:56494377:C:A
Gene:: ZNF667-AS1 (Varview), LOC124904776 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.00003/4 (GnomAD_exomes)
A=0.000743/12 (TOMMO)
A=0.001711/5 (KOREAN)
HGVS:: NC_000019.10:g.56494378C>A, NC_000019.9:g.57005747C>A, NR_036521.1:n.724C>A, NR_036522.1:n.369C>A

Select item 146405397618.

rs1464053976 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 19:56494536 (GRCh38)
19:57005905 (GRCh37)
Canonical SPDI:: NC_000019.10:56494535:T:C
Gene:: ZNF667-AS1 (Varview), LOC124904776 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0.000021/3 (GnomAD)
C=0.000023/6 (TOPMED)
HGVS:: NC_000019.10:g.56494536T>C, NC_000019.9:g.57005905T>C, NR_036521.1:n.882T>C, NR_036522.1:n.527T>C

Select item 146360180919.

rs1463601809 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 19:56494718 (GRCh38)
19:57006087 (GRCh37)
Canonical SPDI:: NC_000019.10:56494717:C:T
Gene:: ZNF667-AS1 (Varview), LOC124904776 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000019.10:g.56494718C>T, NC_000019.9:g.57006087C>T, NR_036521.1:n.1064C>T, NR_036522.1:n.709C>T

Select item 146354987920.

rs1463549879 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 19:56478175 (GRCh38)
19:56989544 (GRCh37)
Canonical SPDI:: NC_000019.10:56478174:G:C
Gene:: ZNF667 (Varview), ZNF667-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000011/3 (TOPMED)
HGVS:: NC_000019.10:g.56478175G>C, NC_000019.9:g.56989544G>C, NR_036521.1:n.302G>C, NR_036522.1:n.52G>C