SNP Links for Nucleotide (Select 300795938) - SNP

Links from Nucleotide

Items: 1 to 20 of 199

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Select item 14881912271.

rs1488191227 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 6:111503464 (GRCh38)
6:111824667 (GRCh37)
Canonical SPDI:: NC_000006.12:111503463:G:A
Gene:: TRAF3IP2-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000006.12:g.111503464G>A, NC_000006.11:g.111824667G>A, NR_034111.1:n.509G>A

Select item 14877041002.

rs1487704100 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G,T [Show Flanks]
Chromosome:: 6:111503312 (GRCh38)
6:111824515 (GRCh37)
Canonical SPDI:: NC_000006.12:111503311:A:G,NC_000006.12:111503311:A:T
Gene:: TRAF3IP2-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: G=0.000051/1 (ALFA)
G=0.000015/2 (GnomAD_exomes)
HGVS:: NC_000006.12:g.111503312A>G, NC_000006.12:g.111503312A>T, NC_000006.11:g.111824515A>G, NC_000006.11:g.111824515A>T, NR_034111.1:n.357A>G, NR_034111.1:n.357A>T

Select item 14857998453.

rs1485799845 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 6:111484835 (GRCh38)
6:111806038 (GRCh37)
Canonical SPDI:: NC_000006.12:111484834:C:T
Gene:: REV3L (Varview), TRAF3IP2-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000006.12:g.111484835C>T, NC_000006.11:g.111806038C>T, NG_053000.1:g.3881G>A, NR_034111.1:n.314C>T

Select item 14841690944.

rs1484169094 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 6:111483653 (GRCh38)
6:111804856 (GRCh37)
Canonical SPDI:: NC_000006.12:111483652:G:A,NC_000006.12:111483652:G:T
Gene:: REV3L (Varview), TRAF3IP2-AS1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,non_coding_transcript_variant,upstream_transcript_variant,5_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
A=0.000008/2 (TOPMED)
HGVS:: NC_000006.12:g.111483653G>A, NC_000006.12:g.111483653G>T, NC_000006.11:g.111804856G>A, NC_000006.11:g.111804856G>T, NG_053000.1:g.5063C>T, NG_053000.1:g.5063C>A, NM_002912.5:c.-396C>T, NM_002912.5:c.-396C>A, NM_002912.4:c.-396C>T, NM_002912.4:c.-396C>A, NM_001286431.2:c.-865C>T, NM_001286431.2:c.-865C>A, NM_001286431.1:c.-865C>T, NM_001286431.1:c.-865C>A, NM_001286432.2:c.-758C>T, NM_001286432.2:c.-758C>A, NM_001286432.1:c.-758C>T, NM_001286432.1:c.-758C>A, NR_034108.1:n.182G>A, NR_034108.1:n.182G>T, NR_034109.1:n.182G>A, NR_034109.1:n.182G>T, NR_034110.1:n.182G>A, NR_034110.1:n.182G>T, NR_034111.1:n.182G>A, NR_034111.1:n.182G>T

Select item 14778951875.

rs1477895187 [Homo sapiens]

Variant type:: DELINS
Alleles:: G>-,GG [Show Flanks]
Chromosome:: 6:111483527 (GRCh38)
6:111804730 (GRCh37)
Canonical SPDI:: NC_000006.12:111483526:GGGGGG:GGGGG,NC_000006.12:111483526:GGGGGG:GGGGGGG
Gene:: REV3L (Varview), TRAF3IP2-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,upstream_transcript_variant,genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GGGGGGG=0./0 (ALFA)
-=0.000009/1 (GnomAD_exomes)
HGVS:: NC_000006.12:g.111483532del, NC_000006.12:g.111483532dup, NC_000006.11:g.111804735del, NC_000006.11:g.111804735dup, NG_053000.1:g.5189del, NG_053000.1:g.5189dup, NR_034108.1:n.61del, NR_034108.1:n.61dup, NR_034109.1:n.61del, NR_034109.1:n.61dup, NR_034110.1:n.61del, NR_034110.1:n.61dup, NR_034111.1:n.61del, NR_034111.1:n.61dup

Select item 14767804496.

rs1476780449 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 6:111484789 (GRCh38)
6:111805992 (GRCh37)
Canonical SPDI:: NC_000006.12:111484788:G:A
Gene:: REV3L (Varview), TRAF3IP2-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000011/3 (TOPMED)
A=0.000014/2 (GnomAD)
A=0.000022/3 (GnomAD_exomes)
HGVS:: NC_000006.12:g.111484789G>A, NC_000006.11:g.111805992G>A, NG_053000.1:g.3927C>T, NR_034111.1:n.268G>A

Select item 14737766807.

rs1473776680 [Homo sapiens]

Variant type:: DELINS
Alleles:: G>- [Show Flanks]
Chromosome:: 6:111483505 (GRCh38)
6:111804708 (GRCh37)
Canonical SPDI:: NC_000006.12:111483504:GGG:GG
Gene:: REV3L (Varview), TRAF3IP2-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,upstream_transcript_variant,genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GG=0./0 (ALFA)
-=0.000068/18 (TOPMED)
-=0.000082/11 (GnomAD)
HGVS:: NC_000006.12:g.111483507del, NC_000006.11:g.111804710del, NG_053000.1:g.5211del, NR_034108.1:n.36del, NR_034109.1:n.36del, NR_034110.1:n.36del, NR_034111.1:n.36del

Select item 14638174758.

rs1463817475 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 6:111483644 (GRCh38)
6:111804847 (GRCh37)
Canonical SPDI:: NC_000006.12:111483643:C:T
Gene:: REV3L (Varview), TRAF3IP2-AS1 (Varview)
Functional Consequence:: upstream_transcript_variant,genic_upstream_transcript_variant,non_coding_transcript_variant,5_prime_UTR_variant
HGVS:: NC_000006.12:g.111483644C>T, NC_000006.11:g.111804847C>T, NG_053000.1:g.5072G>A, NM_002912.5:c.-387G>A, NM_002912.4:c.-387G>A, NM_001286431.2:c.-856G>A, NM_001286431.1:c.-856G>A, NM_001286432.2:c.-749G>A, NM_001286432.1:c.-749G>A, NR_034108.1:n.173C>T, NR_034109.1:n.173C>T, NR_034110.1:n.173C>T, NR_034111.1:n.173C>T

Select item 14634942899.

rs1463494289 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 6:111484829 (GRCh38)
6:111806032 (GRCh37)
Canonical SPDI:: NC_000006.12:111484828:G:A
Gene:: REV3L (Varview), TRAF3IP2-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,upstream_transcript_variant,2KB_upstream_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000007/1 (GnomAD_exomes)
HGVS:: NC_000006.12:g.111484829G>A, NC_000006.11:g.111806032G>A, NG_053000.1:g.3887C>T, NR_034111.1:n.308G>A

Select item 146242631410.

rs1462426314 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G,T [Show Flanks]
Chromosome:: 6:111483513 (GRCh38)
6:111804716 (GRCh37)
Canonical SPDI:: NC_000006.12:111483512:A:G,NC_000006.12:111483512:A:T
Gene:: REV3L (Varview), TRAF3IP2-AS1 (Varview)
Functional Consequence:: upstream_transcript_variant,genic_upstream_transcript_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000085/1 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000008/1 (GnomAD)
T=0.000071/1 (TOMMO)
T=0.000566/1 (Korea1K)
G=0.020237/58 (KOREAN)
HGVS:: NC_000006.12:g.111483513A>G, NC_000006.12:g.111483513A>T, NC_000006.11:g.111804716A>G, NC_000006.11:g.111804716A>T, NG_053000.1:g.5203T>C, NG_053000.1:g.5203T>A, NR_034108.1:n.42A>G, NR_034108.1:n.42A>T, NR_034109.1:n.42A>G, NR_034109.1:n.42A>T, NR_034110.1:n.42A>G, NR_034110.1:n.42A>T, NR_034111.1:n.42A>G, NR_034111.1:n.42A>T

Select item 145596278111.

rs1455962781 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 6:111503499 (GRCh38)
6:111824702 (GRCh37)
Canonical SPDI:: NC_000006.12:111503498:A:C
Gene:: TRAF3IP2-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000006.12:g.111503499A>C, NC_000006.11:g.111824702A>C, NR_034111.1:n.544A>C

Select item 145475314212.

rs1454753142 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 6:111483573 (GRCh38)
6:111804776 (GRCh37)
Canonical SPDI:: NC_000006.12:111483572:G:T
Gene:: REV3L (Varview), TRAF3IP2-AS1 (Varview)
Functional Consequence:: upstream_transcript_variant,genic_upstream_transcript_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000008/2 (TOPMED)
HGVS:: NC_000006.12:g.111483573G>T, NC_000006.11:g.111804776G>T, NG_053000.1:g.5143C>A, NR_034108.1:n.102G>T, NR_034109.1:n.102G>T, NR_034110.1:n.102G>T, NR_034111.1:n.102G>T

Select item 145461652013.

rs1454616520 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->T [Show Flanks]
Chromosome:: 6:111503516 (GRCh38)
6:111824720 (GRCh37)
Canonical SPDI:: NC_000006.12:111503516:T:TT
Gene:: TRAF3IP2-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TT=0.000224/1 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000223/1 (Estonian)
HGVS:: NC_000006.12:g.111503517dup, NC_000006.11:g.111824720dup, NR_034111.1:n.562dup

Select item 145069631114.

rs1450696311 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 6:111483516 (GRCh38)
6:111804719 (GRCh37)
Canonical SPDI:: NC_000006.12:111483515:G:A
Gene:: REV3L (Varview), TRAF3IP2-AS1 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,non_coding_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.111483516G>A, NC_000006.11:g.111804719G>A, NG_053000.1:g.5200C>T, NR_034108.1:n.45G>A, NR_034109.1:n.45G>A, NR_034110.1:n.45G>A, NR_034111.1:n.45G>A

Select item 144974063415.

rs1449740634 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 6:111503317 (GRCh38)
6:111824520 (GRCh37)
Canonical SPDI:: NC_000006.12:111503316:C:T
Gene:: TRAF3IP2-AS1 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.111503317C>T, NC_000006.11:g.111824520C>T, NR_034111.1:n.362C>T

Select item 143943969016.

rs1439439690 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 6:111483598 (GRCh38)
6:111804801 (GRCh37)
Canonical SPDI:: NC_000006.12:111483597:C:T
Gene:: REV3L (Varview), TRAF3IP2-AS1 (Varview)
Functional Consequence:: upstream_transcript_variant,splice_donor_variant,genic_upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency
MAF:: T=0.000017/2 (GnomAD_exomes)
HGVS:: NC_000006.12:g.111483598C>T, NC_000006.11:g.111804801C>T, NG_053000.1:g.5118G>A, NR_034108.1:n.127C>T, NR_034109.1:n.127C>T, NR_034110.1:n.127C>T, NR_034111.1:n.127C>T

Select item 143545918117.

rs1435459181 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 6:111483524 (GRCh38)
6:111804727 (GRCh37)
Canonical SPDI:: NC_000006.12:111483523:G:A
Gene:: REV3L (Varview), TRAF3IP2-AS1 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000008/2 (TOPMED)
HGVS:: NC_000006.12:g.111483524G>A, NC_000006.11:g.111804727G>A, NG_053000.1:g.5192C>T, NR_034108.1:n.53G>A, NR_034109.1:n.53G>A, NR_034110.1:n.53G>A, NR_034111.1:n.53G>A

Select item 143366753518.

rs1433667535 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 6:111503594 (GRCh38)
6:111824797 (GRCh37)
Canonical SPDI:: NC_000006.12:111503593:A:C
Gene:: TRAF3IP2-AS1 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0.000026/7 (TOPMED)
C=0.000029/4 (GnomAD)
HGVS:: NC_000006.12:g.111503594A>C, NC_000006.11:g.111824797A>C, NR_034111.1:n.639A>C

Select item 143048747919.

rs1430487479 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 6:111483581 (GRCh38)
6:111804784 (GRCh37)
Canonical SPDI:: NC_000006.12:111483580:T:A
Gene:: REV3L (Varview), TRAF3IP2-AS1 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000006.12:g.111483581T>A, NC_000006.11:g.111804784T>A, NG_053000.1:g.5135A>T, NR_034108.1:n.110T>A, NR_034109.1:n.110T>A, NR_034110.1:n.110T>A, NR_034111.1:n.110T>A

Select item 143042100320.

rs1430421003 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 6:111483635 (GRCh38)
6:111804838 (GRCh37)
Canonical SPDI:: NC_000006.12:111483634:G:A
Gene:: REV3L (Varview), TRAF3IP2-AS1 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,genic_upstream_transcript_variant,5_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
A=0.000018/2 (GnomAD_exomes)
HGVS:: NC_000006.12:g.111483635G>A, NC_000006.11:g.111804838G>A, NG_053000.1:g.5081C>T, NM_002912.5:c.-378C>T, NM_002912.4:c.-378C>T, NM_001286431.2:c.-847C>T, NM_001286431.1:c.-847C>T, NM_001286432.2:c.-740C>T, NM_001286432.1:c.-740C>T, NR_034108.1:n.164G>A, NR_034109.1:n.164G>A, NR_034110.1:n.164G>A, NR_034111.1:n.164G>A

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