SNP Links for Nucleotide (Select 300795471) - SNP

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Links from Nucleotide

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Select item 14914293581.

rs1491429358 [Homo sapiens]

Variant type:: DEL
Alleles:: GT>- [Show Flanks]
Chromosome:: 10:104249826 (GRCh38)
10:106009584 (GRCh37)
Canonical SPDI:: NC_000010.11:104249825:GT:
Gene:: LOC124902497 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency
MAF:: -=0.000832/100 (GnomAD)
HGVS:: NC_000010.11:g.104249826_104249827del, NC_000010.10:g.106009584_106009585del, NG_023362.1:g.633_634del

Select item 14913578252.

rs1491357825 has merged into rs10563566 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTTT>-,T,TT,TTT,TTTTT,TTTTTT [Show Flanks]
Chromosome:: 10:104249833 (GRCh38)
10:106009591 (GRCh37)
Canonical SPDI:: NC_000010.11:104249826:TTTTTTTTTT:TTTTTT,NC_000010.11:104249826:TTTTTTTTTT:TTTTTTT,NC_000010.11:104249826:TTTTTTTTTT:TTTTTTTT,NC_000010.11:104249826:TTTTTTTTTT:TTTTTTTTT,NC_000010.11:104249826:TTTTTTTTTT:TTTTTTTTTTT,NC_000010.11:104249826:TTTTTTTTTT:TTTTTTTTTTTT
Gene:: LOC124902497 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTT=0./0 (ALFA)
-=0.104/521 (1000Genomes)
-=0.2623/1081 (Estonian)
-=0.3085/1189 (ALSPAC)
HGVS:: NC_000010.11:g.104249833_104249836del, NC_000010.11:g.104249834_104249836del, NC_000010.11:g.104249835_104249836del, NC_000010.11:g.104249836del, NC_000010.11:g.104249836dup, NC_000010.11:g.104249835_104249836dup, NC_000010.10:g.106009591_106009594del, NC_000010.10:g.106009592_106009594del, NC_000010.10:g.106009593_106009594del, NC_000010.10:g.106009594del, NC_000010.10:g.106009594dup, NC_000010.10:g.106009593_106009594dup, NG_023362.1:g.640_643del, NG_023362.1:g.641_643del, NG_023362.1:g.642_643del, NG_023362.1:g.643del, NG_023362.1:g.643dup, NG_023362.1:g.642_643dup

Select item 14910699003.

rs1491069900 has merged into rs111298496 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTT>-,T,TT,TTTT,TTTTT [Show Flanks]
Chromosome:: 10:104257355 (GRCh38)
10:106017113 (GRCh37)
Canonical SPDI:: NC_000010.11:104257342:TTTTTTTTTTTTTTT:TTTTTTTTTTTT,NC_000010.11:104257342:TTTTTTTTTTTTTTT:TTTTTTTTTTTTT,NC_000010.11:104257342:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000010.11:104257342:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000010.11:104257342:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT
Gene:: GSTO1 (Varview), LOC124902497 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTTTTTT=0./0 (ALFA)
-=0.04013/24 (NorthernSweden)
-=0.3/12 (GENOME_DK)
HGVS:: NC_000010.11:g.104257355_104257357del, NC_000010.11:g.104257356_104257357del, NC_000010.11:g.104257357del, NC_000010.11:g.104257357dup, NC_000010.11:g.104257356_104257357dup, NC_000010.10:g.106017113_106017115del, NC_000010.10:g.106017114_106017115del, NC_000010.10:g.106017115del, NC_000010.10:g.106017115dup, NC_000010.10:g.106017114_106017115dup, NG_023362.1:g.8162_8164del, NG_023362.1:g.8163_8164del, NG_023362.1:g.8164del, NG_023362.1:g.8164dup, NG_023362.1:g.8163_8164dup

Select item 14908697834.

rs1490869783 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 10:104267177 (GRCh38)
10:106026935 (GRCh37)
Canonical SPDI:: NC_000010.11:104267176:A:G
Gene:: GSTO1 (Varview), LOC124902497 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.104267177A>G, NC_000010.10:g.106026935A>G, NG_023363.1:g.3305A>G, NG_023362.1:g.17984A>G

Select item 14908428005.

rs1490842800 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 10:104254012 (GRCh38)
10:106013770 (GRCh37)
Canonical SPDI:: NC_000010.11:104254011:G:A
Gene:: GSTO1 (Varview), LOC124902497 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.104254012G>A, NC_000010.10:g.106013770G>A, NG_023362.1:g.4819G>A

Select item 14906468076.

rs1490646807 [Homo sapiens]

Variant type:: DELINS
Alleles:: CTTT>- [Show Flanks]
Chromosome:: 10:104266256 (GRCh38)
10:106026014 (GRCh37)
Canonical SPDI:: NC_000010.11:104266251:CTTTCTTT:CTTT
Gene:: GSTO1 (Varview), LOC124902497 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: CTTTCTTT=0./0 (ALFA)
-=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.104266252CTTT[1], NC_000010.10:g.106026010CTTT[1], NG_023363.1:g.2380CTTT[1], NG_023362.1:g.17059CTTT[1]

Select item 14904785587.

rs1490478558 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 10:104262513 (GRCh38)
10:106022271 (GRCh37)
Canonical SPDI:: NC_000010.11:104262512:A:C
Gene:: GSTO1 (Varview), LOC124902497 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0.000014/2 (GnomAD)
C=0.000015/4 (TOPMED)
C=0.003821/7 (Korea1K)
HGVS:: NC_000010.11:g.104262513A>C, NC_000010.10:g.106022271A>C, NG_023362.1:g.13320A>C

Select item 14903723308.

rs1490372330 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 10:104263505 (GRCh38)
10:106023263 (GRCh37)
Canonical SPDI:: NC_000010.11:104263504:A:G
Gene:: GSTO1 (Varview), LOC124902497 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000015/4 (TOPMED)
HGVS:: NC_000010.11:g.104263505A>G, NC_000010.10:g.106023263A>G, NG_023362.1:g.14312A>G

Select item 14903167229.

rs1490316722 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 10:104262005 (GRCh38)
10:106021763 (GRCh37)
Canonical SPDI:: NC_000010.11:104262004:G:C
Gene:: GSTO1 (Varview), LOC124902497 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.104262005G>C, NC_000010.10:g.106021763G>C, NG_023362.1:g.12812G>C

Select item 149002512110.

rs1490025121 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 10:104253336 (GRCh38)
10:106013094 (GRCh37)
Canonical SPDI:: NC_000010.11:104253335:C:T
Gene:: GSTO1 (Varview), LOC124902497 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.104253336C>T, NC_000010.10:g.106013094C>T, NG_023362.1:g.4143C>T

Select item 148992135911.

rs1489921359 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->CA [Show Flanks]
Chromosome:: 10:104268965 (GRCh38)
10:106028724 (GRCh37)
Canonical SPDI:: NC_000010.11:104268965:CACA:CACACA
Gene:: GSTO2 (Varview), MIR4482 (Varview), LOC124902497 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CACACA=0.000142/2 (ALFA)
CA=0.000257/36 (GnomAD)
CA=0.000276/73 (TOPMED)
HGVS:: NC_000010.11:g.104268966CA[3], NC_000010.10:g.106028724CA[3], NG_023363.1:g.5094CA[3], NM_183239.1:c.-535CA[3], NM_001191013.1:c.-535CA[3], NG_023362.1:g.19773CA[3]

Select item 148986330712.

rs1489863307 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 10:104252758 (GRCh38)
10:106012516 (GRCh37)
Canonical SPDI:: NC_000010.11:104252757:A:G
Gene:: GSTO1 (Varview), LOC124902497 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000008/2 (TOPMED)
HGVS:: NC_000010.11:g.104252758A>G, NC_000010.10:g.106012516A>G, NG_023362.1:g.3565A>G

Select item 148968515813.

rs1489685158 [Homo sapiens]

Variant type:: DELINS
Alleles:: ATTT>- [Show Flanks]
Chromosome:: 10:104265863 (GRCh38)
10:106025621 (GRCh37)
Canonical SPDI:: NC_000010.11:104265859:TTTATTT:TTT
Gene:: GSTO1 (Varview), LOC124902497 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTT=0.000071/1 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.104265863_104265866del, NC_000010.10:g.106025621_106025624del, NG_023363.1:g.1991_1994del, NG_023362.1:g.16670_16673del

Select item 148951661214.

rs1489516612 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 10:104252611 (GRCh38)
10:106012369 (GRCh37)
Canonical SPDI:: NC_000010.11:104252610:T:C
Gene:: GSTO1 (Varview), LOC124902497 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000142/2 (ALFA)
C=0.000021/3 (GnomAD)
C=0.000038/10 (TOPMED)
HGVS:: NC_000010.11:g.104252611T>C, NC_000010.10:g.106012369T>C, NG_023362.1:g.3418T>C

Select item 148945921815.

rs1489459218 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 10:104269259 (GRCh38)
10:106029017 (GRCh37)
Canonical SPDI:: NC_000010.11:104269258:C:T
Gene:: GSTO2 (Varview), MIR4482 (Varview), LOC124902497 (Varview)
Functional Consequence:: 2KB_upstream_variant,genic_upstream_transcript_variant,upstream_transcript_variant,5_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000010.11:g.104269259C>T, NC_000010.10:g.106029017C>T, NG_023363.1:g.5387C>T, NM_183239.1:c.-242C>T, NM_183239.2:c.-242C>T, NM_001191013.1:c.-242C>T, NM_001191013.2:c.-242C>T, NG_023362.1:g.20066C>T

Select item 148939031216.

rs1489390312 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 10:104252258 (GRCh38)
10:106012016 (GRCh37)
Canonical SPDI:: NC_000010.11:104252257:C:G
Gene:: GSTO1 (Varview), LOC124902497 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000015/4 (TOPMED)
G=0.000029/4 (GnomAD)
HGVS:: NC_000010.11:g.104252258C>G, NC_000010.10:g.106012016C>G, NG_023362.1:g.3065C>G

Select item 148920242417.

rs1489202424 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 10:104261454 (GRCh38)
10:106021212 (GRCh37)
Canonical SPDI:: NC_000010.11:104261453:G:T
Gene:: GSTO1 (Varview), LOC124902497 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0.000071/1 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000010.11:g.104261454G>T, NC_000010.10:g.106021212G>T, NG_023362.1:g.12261G>T

Select item 148913336318.

rs1489133363 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 10:104260184 (GRCh38)
10:106019942 (GRCh37)
Canonical SPDI:: NC_000010.11:104260183:G:A
Gene:: GSTO1 (Varview), LOC124902497 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000010.11:g.104260184G>A, NC_000010.10:g.106019942G>A, NG_023362.1:g.10991G>A

Select item 148887020719.

rs1488870207 [Homo sapiens]

Variant type:: DELINS
Alleles:: GGAACATG>- [Show Flanks]
Chromosome:: 10:104260906 (GRCh38)
10:106020664 (GRCh37)
Canonical SPDI:: NC_000010.11:104260904:GGGAACATG:G
Gene:: GSTO1 (Varview), LOC124902497 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000010.11:g.104260906_104260913del, NC_000010.10:g.106020664_106020671del, NG_023362.1:g.11713_11720del

Select item 148829703420.

rs1488297034 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 10:104252175 (GRCh38)
10:106011933 (GRCh37)
Canonical SPDI:: NC_000010.11:104252174:C:T
Gene:: GSTO1 (Varview), LOC124902497 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.104252175C>T, NC_000010.10:g.106011933C>T, NG_023362.1:g.2982C>T

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