SNP Links for Nucleotide (Select 269847213) - SNP

Select item 14823885591.

rs1482388559 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 7:18127305 (GRCh38)
7:18166928 (GRCh37)
Canonical SPDI:: NC_000007.14:18127304:T:A
Gene:: HDAC9 (Varview), MIR1302-6 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.18127305T>A, NC_000007.13:g.18166928T>A, NG_023250.3:g.45357T>A, NR_031635.1:n.5A>T

Select item 14256430192.

rs1425643019 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 7:18127272 (GRCh38)
7:18166895 (GRCh37)
Canonical SPDI:: NC_000007.14:18127271:A:G
Gene:: HDAC9 (Varview), MIR1302-6 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.18127272A>G, NC_000007.13:g.18166895A>G, NG_023250.3:g.45324A>G, NR_031635.1:n.38T>C

Select item 13362570933.

rs1336257093 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 7:18127246 (GRCh38)
7:18166869 (GRCh37)
Canonical SPDI:: NC_000007.14:18127245:A:G
Gene:: HDAC9 (Varview), MIR1302-6 (Varview)
Functional Consequence:: non_coding_transcript_variant,genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000011/3 (TOPMED)
G=0.000029/4 (GnomAD)
HGVS:: NC_000007.14:g.18127246A>G, NC_000007.13:g.18166869A>G, NG_023250.3:g.45298A>G, NR_031635.1:n.64T>C

Select item 12772595184.

rs1277259518 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 7:18127307 (GRCh38)
7:18166930 (GRCh37)
Canonical SPDI:: NC_000007.14:18127306:G:A,NC_000007.14:18127306:G:C
Gene:: HDAC9 (Varview), MIR1302-6 (Varview)
Functional Consequence:: non_coding_transcript_variant,genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
C=0.000071/1 (TOMMO)
HGVS:: NC_000007.14:g.18127307G>A, NC_000007.14:g.18127307G>C, NC_000007.13:g.18166930G>A, NC_000007.13:g.18166930G>C, NG_023250.3:g.45359G>A, NG_023250.3:g.45359G>C, NR_031635.1:n.3C>T, NR_031635.1:n.3C>G

Select item 12569106755.

rs1256910675 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 7:18127296 (GRCh38)
7:18166919 (GRCh37)
Canonical SPDI:: NC_000007.14:18127295:C:T
Gene:: HDAC9 (Varview), MIR1302-6 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0.000142/2 (ALFA)
T=0.000019/5 (TOPMED)
HGVS:: NC_000007.14:g.18127296C>T, NC_000007.13:g.18166919C>T, NG_023250.3:g.45348C>T, NR_031635.1:n.14G>A

Select item 12446796356.

rs1244679635 [Homo sapiens]

Variant type:: DEL
Alleles:: C>- [Show Flanks]
Chromosome:: 7:18127230 (GRCh38)
7:18166853 (GRCh37)
Canonical SPDI:: NC_000007.14:18127229:C:
Gene:: HDAC9 (Varview), MIR1302-6 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.000007/1 (GnomAD)
-=0.00003/8 (TOPMED)
HGVS:: NC_000007.14:g.18127230del, NC_000007.13:g.18166853del, NG_023250.3:g.45282del, NR_031635.1:n.80del

Select item 10151460637.

rs1015146063 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 7:18127288 (GRCh38)
7:18166911 (GRCh37)
Canonical SPDI:: NC_000007.14:18127287:A:G
Gene:: HDAC9 (Varview), MIR1302-6 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency
MAF:: A=0.5/1 (Siberian)
HGVS:: NC_000007.14:g.18127288A>G, NC_000007.13:g.18166911A>G, NG_023250.3:g.45340A>G, NR_031635.1:n.22T>C

Select item 9906932928.

rs990693292 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 7:18127236 (GRCh38)
7:18166859 (GRCh37)
Canonical SPDI:: NC_000007.14:18127235:T:C
Gene:: HDAC9 (Varview), MIR1302-6 (Varview)
Functional Consequence:: non_coding_transcript_variant,genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000015/4 (TOPMED)
C=0.000021/3 (GnomAD)
HGVS:: NC_000007.14:g.18127236T>C, NC_000007.13:g.18166859T>C, NG_023250.3:g.45288T>C, NR_031635.1:n.74A>G

Select item 9833893719.

rs983389371 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,G [Show Flanks]
Chromosome:: 7:18127299 (GRCh38)
7:18166922 (GRCh37)
Canonical SPDI:: NC_000007.14:18127298:A:C,NC_000007.14:18127298:A:G
Gene:: HDAC9 (Varview), MIR1302-6 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0./0 (GnomAD)
C=0.000004/1 (TOPMED)
C=0.000042/1 (GnomAD_exomes)
HGVS:: NC_000007.14:g.18127299A>C, NC_000007.14:g.18127299A>G, NC_000007.13:g.18166922A>C, NC_000007.13:g.18166922A>G, NG_023250.3:g.45351A>C, NG_023250.3:g.45351A>G, NR_031635.1:n.11T>G, NR_031635.1:n.11T>C

Select item 97093522510.

rs970935225 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 7:18127268 (GRCh38)
7:18166891 (GRCh37)
Canonical SPDI:: NC_000007.14:18127267:A:G
Gene:: HDAC9 (Varview), MIR1302-6 (Varview)
Functional Consequence:: non_coding_transcript_variant,genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000026/7 (TOPMED)
HGVS:: NC_000007.14:g.18127268A>G, NC_000007.13:g.18166891A>G, NG_023250.3:g.45320A>G, NR_031635.1:n.42T>C

Select item 91814061811.

rs918140618 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 7:18127230 (GRCh38)
7:18166853 (GRCh37)
Canonical SPDI:: NC_000007.14:18127229:C:T
Gene:: HDAC9 (Varview), MIR1302-6 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.18127230C>T, NC_000007.13:g.18166853C>T, NG_023250.3:g.45282C>T, NR_031635.1:n.80G>A

Select item 91775295112.

rs917752951 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 7:18127239 (GRCh38)
7:18166862 (GRCh37)
Canonical SPDI:: NC_000007.14:18127238:C:T
Gene:: HDAC9 (Varview), MIR1302-6 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000014/2 (GnomAD)
C=0.5/1 (SGDP_PRJ)
HGVS:: NC_000007.14:g.18127239C>T, NC_000007.13:g.18166862C>T, NG_023250.3:g.45291C>T, NR_031635.1:n.71G>A

Select item 77685767213.

rs776857672 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 7:18127291 (GRCh38)
7:18166914 (GRCh37)
Canonical SPDI:: NC_000007.14:18127290:T:C
Gene:: HDAC9 (Varview), MIR1302-6 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by cluster
MAF:: C=0.0001/1 (ExAC)
HGVS:: NC_000007.14:g.18127291T>C, NC_000007.13:g.18166914T>C, NG_023250.3:g.45343T>C, NR_031635.1:n.19A>G

Select item 77108099614.

rs771080996 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 7:18127224 (GRCh38)
7:18166847 (GRCh37)
Canonical SPDI:: NC_000007.14:18127223:C:A,NC_000007.14:18127223:C:T
Gene:: HDAC9 (Varview), MIR1302-6 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0.00004/1 (GnomAD_exomes)
A=0.00011/1 (ExAC)
HGVS:: NC_000007.14:g.18127224C>A, NC_000007.14:g.18127224C>T, NC_000007.13:g.18166847C>A, NC_000007.13:g.18166847C>T, NG_023250.3:g.45276C>A, NG_023250.3:g.45276C>T, NR_031635.1:n.86G>T, NR_031635.1:n.86G>A

Select item 56903224515.

rs569032245 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 7:18127262 (GRCh38)
7:18166885 (GRCh37)
Canonical SPDI:: NC_000007.14:18127261:T:C
Gene:: HDAC9 (Varview), MIR1302-6 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0./0 (GnomAD)
C=0.000008/2 (TOPMED)
HGVS:: NC_000007.14:g.18127262T>C, NC_000007.13:g.18166885T>C, NG_023250.3:g.45314T>C, NR_031635.1:n.48A>G

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Links from Nucleotide

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