SNP Links for Nucleotide (Select 262206028) - SNP

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Links from Nucleotide

Items: 1 to 20 of 28

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Select item 14636591641.

rs1463659164 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 10:75552540 (GRCh38)
10:77312298 (GRCh37)
Canonical SPDI:: NC_000010.11:75552539:C:G,NC_000010.11:75552539:C:T
Gene:: LRMDA (Varview), MIR606 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.75552540C>G, NC_000010.11:g.75552540C>T, NC_000010.10:g.77312298C>G, NC_000010.10:g.77312298C>T, NG_042180.1:g.125895C>G, NG_042180.1:g.125895C>T, NR_030337.1:n.83C>G, NR_030337.1:n.83C>T

Select item 14565121792.

rs1456512179 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,G,T [Show Flanks]
Chromosome:: 10:75552501 (GRCh38)
10:77312259 (GRCh37)
Canonical SPDI:: NC_000010.11:75552500:A:C,NC_000010.11:75552500:A:G,NC_000010.11:75552500:A:T
Gene:: LRMDA (Varview), MIR606 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
C=0.000005/1 (GnomAD_exomes)
G=0.000007/1 (GnomAD)
T=0.000106/3 (TOMMO)
HGVS:: NC_000010.11:g.75552501A>C, NC_000010.11:g.75552501A>G, NC_000010.11:g.75552501A>T, NC_000010.10:g.77312259A>C, NC_000010.10:g.77312259A>G, NC_000010.10:g.77312259A>T, NG_042180.1:g.125856A>C, NG_042180.1:g.125856A>G, NG_042180.1:g.125856A>T, NR_030337.1:n.44A>C, NR_030337.1:n.44A>G, NR_030337.1:n.44A>T

Select item 14129427583.

rs1412942758 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 10:75552468 (GRCh38)
10:77312226 (GRCh37)
Canonical SPDI:: NC_000010.11:75552467:G:A
Gene:: LRMDA (Varview), MIR606 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0.000071/1 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000010.11:g.75552468G>A, NC_000010.10:g.77312226G>A, NG_042180.1:g.125823G>A, NR_030337.1:n.11G>A

Select item 14019481834.

rs1401948183 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 10:75552536 (GRCh38)
10:77312294 (GRCh37)
Canonical SPDI:: NC_000010.11:75552535:G:T
Gene:: LRMDA (Varview), MIR606 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant,genic_upstream_transcript_variant
HGVS:: NC_000010.11:g.75552536G>T, NC_000010.10:g.77312294G>T, NG_042180.1:g.125891G>T, NR_030337.1:n.79G>T

Select item 13222409885.

rs1322240988 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 10:75552464 (GRCh38)
10:77312222 (GRCh37)
Canonical SPDI:: NC_000010.11:75552463:C:T
Gene:: LRMDA (Varview), MIR606 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000009/1 (GnomAD_exomes)
HGVS:: NC_000010.11:g.75552464C>T, NC_000010.10:g.77312222C>T, NG_042180.1:g.125819C>T, NR_030337.1:n.7C>T

Select item 12634227006.

rs1263422700 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 10:75552479 (GRCh38)
10:77312237 (GRCh37)
Canonical SPDI:: NC_000010.11:75552478:T:C
Gene:: LRMDA (Varview), MIR606 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,non_coding_transcript_variant
HGVS:: NC_000010.11:g.75552479T>C, NC_000010.10:g.77312237T>C, NG_042180.1:g.125834T>C, NR_030337.1:n.22T>C

Select item 12589541967.

rs1258954196 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->A [Show Flanks]
Chromosome:: 10:75552552 (GRCh38)
10:77312311 (GRCh37)
Canonical SPDI:: NC_000010.11:75552552:A:AA
Gene:: LRMDA (Varview), MIR606 (Varview)
Functional Consequence:: non_coding_transcript_variant,genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: AA=0./0 (ALFA)
HGVS:: NC_000010.11:g.75552553dup, NC_000010.10:g.77312311dup, NG_042180.1:g.125908dup, NR_030337.1:n.96dup

Select item 11995433848.

rs1199543384 [Homo sapiens]

Variant type:: DEL
Alleles:: G>- [Show Flanks]
Chromosome:: 10:75552488 (GRCh38)
10:77312246 (GRCh37)
Canonical SPDI:: NC_000010.11:75552487:G:
Gene:: LRMDA (Varview), MIR606 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.000013/2 (GnomAD_exomes)
-=0.000015/4 (TOPMED)
HGVS:: NC_000010.11:g.75552488del, NC_000010.10:g.77312246del, NG_042180.1:g.125843del, NR_030337.1:n.31del

Select item 11780861159.

rs1178086115 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 10:75552502 (GRCh38)
10:77312260 (GRCh37)
Canonical SPDI:: NC_000010.11:75552501:T:C
Gene:: LRMDA (Varview), MIR606 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant,genic_upstream_transcript_variant
HGVS:: NC_000010.11:g.75552502T>C, NC_000010.10:g.77312260T>C, NG_042180.1:g.125857T>C, NR_030337.1:n.45T>C

Select item 117360743110.

rs1173607431 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 10:75552466 (GRCh38)
10:77312224 (GRCh37)
Canonical SPDI:: NC_000010.11:75552465:T:C
Gene:: LRMDA (Varview), MIR606 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant,non_coding_transcript_variant
HGVS:: NC_000010.11:g.75552466T>C, NC_000010.10:g.77312224T>C, NG_042180.1:g.125821T>C, NR_030337.1:n.9T>C

Select item 117095021411.

rs1170950214 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 10:75552523 (GRCh38)
10:77312281 (GRCh37)
Canonical SPDI:: NC_000010.11:75552522:A:G
Gene:: LRMDA (Varview), MIR606 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000005/1 (GnomAD_exomes)
G=0.000007/1 (GnomAD)
A=0.5/1 (SGDP_PRJ)
HGVS:: NC_000010.11:g.75552523A>G, NC_000010.10:g.77312281A>G, NG_042180.1:g.125878A>G, NR_030337.1:n.66A>G

Select item 115880613112.

rs1158806131 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 10:75552496 (GRCh38)
10:77312254 (GRCh37)
Canonical SPDI:: NC_000010.11:75552495:G:A
Gene:: LRMDA (Varview), MIR606 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000010.11:g.75552496G>A, NC_000010.10:g.77312254G>A, NG_042180.1:g.125851G>A, NR_030337.1:n.39G>A

Select item 103979387713.

rs1039793877 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 10:75552510 (GRCh38)
10:77312268 (GRCh37)
Canonical SPDI:: NC_000010.11:75552509:A:G
Gene:: LRMDA (Varview), MIR606 (Varview)
Functional Consequence:: non_coding_transcript_variant,genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000019/5 (TOPMED)
HGVS:: NC_000010.11:g.75552510A>G, NC_000010.10:g.77312268A>G, NG_042180.1:g.125865A>G, NR_030337.1:n.53A>G

Select item 91260108414.

rs912601084 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,C [Show Flanks]
Chromosome:: 10:75552481 (GRCh38)
10:77312239 (GRCh37)
Canonical SPDI:: NC_000010.11:75552480:T:A,NC_000010.11:75552480:T:C
Gene:: LRMDA (Varview), MIR606 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000010.11:g.75552481T>A, NC_000010.11:g.75552481T>C, NC_000010.10:g.77312239T>A, NC_000010.10:g.77312239T>C, NG_042180.1:g.125836T>A, NG_042180.1:g.125836T>C, NR_030337.1:n.24T>A, NR_030337.1:n.24T>C

Select item 86878882815.

rs868788828 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 10:75552545 (GRCh38)
10:77312303 (GRCh37)
Canonical SPDI:: NC_000010.11:75552544:G:A,NC_000010.11:75552544:G:T
Gene:: LRMDA (Varview), MIR606 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000004/1 (TOPMED)
T=0.00463/1 (Qatari)
HGVS:: NC_000010.11:g.75552545G>A, NC_000010.11:g.75552545G>T, NC_000010.10:g.77312303G>A, NC_000010.10:g.77312303G>T, NG_042180.1:g.125900G>A, NG_042180.1:g.125900G>T, NR_030337.1:n.88G>A, NR_030337.1:n.88G>T

Select item 78000423416.

rs780004234 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 10:75552497 (GRCh38)
10:77312255 (GRCh37)
Canonical SPDI:: NC_000010.11:75552496:T:C
Gene:: LRMDA (Varview), MIR606 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency,by cluster
MAF:: C=0.000006/1 (GnomAD_exomes)
C=0.000033/1 (ExAC)
HGVS:: NC_000010.11:g.75552497T>C, NC_000010.10:g.77312255T>C, NG_042180.1:g.125852T>C, NR_030337.1:n.40T>C

Select item 77785076417.

rs777850764 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 10:75552513 (GRCh38)
10:77312271 (GRCh37)
Canonical SPDI:: NC_000010.11:75552512:A:G
Gene:: LRMDA (Varview), MIR606 (Varview)
Functional Consequence:: non_coding_transcript_variant,genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0./0 (ExAC)
G=0.000007/1 (GnomAD)
G=0.000008/2 (TOPMED)
HGVS:: NC_000010.11:g.75552513A>G, NC_000010.10:g.77312271A>G, NG_042180.1:g.125868A>G, NR_030337.1:n.56A>G

Select item 77381238918.

rs773812389 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 10:75552512 (GRCh38)
10:77312270 (GRCh37)
Canonical SPDI:: NC_000010.11:75552511:C:T
Gene:: LRMDA (Varview), MIR606 (Varview)
Functional Consequence:: non_coding_transcript_variant,genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by cluster
MAF:: T=0./0 (TWINSUK)
T=0.0003/1 (ALSPAC)
HGVS:: NC_000010.11:g.75552512C>T, NC_000010.10:g.77312270C>T, NG_042180.1:g.125867C>T, NR_030337.1:n.55C>T

Select item 77086920319.

rs770869203 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 10:75552522 (GRCh38)
10:77312280 (GRCh37)
Canonical SPDI:: NC_000010.11:75552521:T:C
Gene:: LRMDA (Varview), MIR606 (Varview)
Functional Consequence:: non_coding_transcript_variant,genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by cluster
MAF:: C=0.00003/1 (ExAC)
HGVS:: NC_000010.11:g.75552522T>C, NC_000010.10:g.77312280T>C, NG_042180.1:g.125877T>C, NR_030337.1:n.65T>C

Select item 75836271620.

rs758362716 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 10:75552486 (GRCh38)
10:77312244 (GRCh37)
Canonical SPDI:: NC_000010.11:75552485:A:G
Gene:: LRMDA (Varview), MIR606 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000038/1 (ExAC)
G=0.000053/8 (GnomAD_exomes)
G=0.000117/16 (GnomAD)
HGVS:: NC_000010.11:g.75552486A>G, NC_000010.10:g.77312244A>G, NG_042180.1:g.125841A>G, NR_030337.1:n.29A>G

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