SNP Links for Nucleotide (Select 262205800) - SNP

Select item 14668156571.

rs1466815657 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 12:6963753 (GRCh38)
12:7072916 (GRCh37)
Canonical SPDI:: NC_000012.12:6963752:G:A
Gene:: MIR141 (Varview), MIR200C (Varview), LOC105369634 (Varview), MIR200CHG (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000012.12:g.6963753G>A, NW_003871083.2:g.165336G>A, NC_000012.11:g.7072916G>A, NR_029779.1:n.55G>A

Select item 14484703462.

rs1448470346 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 12:6963736 (GRCh38)
12:7072899 (GRCh37)
Canonical SPDI:: NC_000012.12:6963735:A:C
Gene:: MIR141 (Varview), MIR200C (Varview), LOC105369634 (Varview), MIR200CHG (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000012.12:g.6963736A>C, NW_003871083.2:g.165319A>C, NC_000012.11:g.7072899A>C, NR_029779.1:n.38A>C

Select item 14004332603.

rs1400433260 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: 12:6963758 (GRCh38)
12:7072921 (GRCh37)
Canonical SPDI:: NC_000012.12:6963757:T:C,NC_000012.12:6963757:T:G
Gene:: MIR141 (Varview), MIR200C (Varview), LOC105369634 (Varview), MIR200CHG (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000012.12:g.6963758T>C, NC_000012.12:g.6963758T>G, NW_003871083.2:g.165341T>C, NW_003871083.2:g.165341T>G, NC_000012.11:g.7072921T>C, NC_000012.11:g.7072921T>G, NR_029779.1:n.60T>C, NR_029779.1:n.60T>G

Select item 13382595334.

rs1338259533 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 12:6963728 (GRCh38)
12:7072891 (GRCh37)
Canonical SPDI:: NC_000012.12:6963727:C:A,NC_000012.12:6963727:C:T
Gene:: MIR141 (Varview), MIR200C (Varview), LOC105369634 (Varview), MIR200CHG (Varview)
Functional Consequence:: non_coding_transcript_variant,2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.00018/3 (TOMMO)
T=0.00069/2 (KOREAN)
HGVS:: NC_000012.12:g.6963728C>A, NC_000012.12:g.6963728C>T, NW_003871083.2:g.165311C>A, NW_003871083.2:g.165311C>T, NC_000012.11:g.7072891C>A, NC_000012.11:g.7072891C>T, NR_029779.1:n.30C>A, NR_029779.1:n.30C>T

Select item 13186735595.

rs1318673559 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 12:6963704 (GRCh38)
12:7072867 (GRCh37)
Canonical SPDI:: NC_000012.12:6963703:G:A
Gene:: MIR141 (Varview), MIR200C (Varview), LOC105369634 (Varview), MIR200CHG (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000023/6 (TOPMED)
A=0.000051/2 (GnomAD_exomes)
A=0.000057/8 (GnomAD)
HGVS:: NC_000012.12:g.6963704G>A, NW_003871083.2:g.165287G>A, NC_000012.11:g.7072867G>A, NR_029779.1:n.6G>A

Select item 12775977876.

rs1277597787 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,G [Show Flanks]
Chromosome:: 12:6963716 (GRCh38)
12:7072879 (GRCh37)
Canonical SPDI:: NC_000012.12:6963715:A:C,NC_000012.12:6963715:A:G
Gene:: MIR141 (Varview), MIR200C (Varview), LOC105369634 (Varview), MIR200CHG (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000012.12:g.6963716A>C, NC_000012.12:g.6963716A>G, NW_003871083.2:g.165299A>C, NW_003871083.2:g.165299A>G, NC_000012.11:g.7072879A>C, NC_000012.11:g.7072879A>G, NR_029779.1:n.18A>C, NR_029779.1:n.18A>G

Select item 12767665087.

rs1276766508 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 12:6963699 (GRCh38)
12:7072862 (GRCh37)
Canonical SPDI:: NC_000012.12:6963698:C:T
Gene:: MIR141 (Varview), MIR200C (Varview), LOC105369634 (Varview), MIR200CHG (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000012.12:g.6963699C>T, NW_003871083.2:g.165282C>T, NC_000012.11:g.7072862C>T, NR_029779.1:n.1C>T

Select item 12205896708.

rs1220589670 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 12:6963703 (GRCh38)
12:7072866 (GRCh37)
Canonical SPDI:: NC_000012.12:6963702:C:G,NC_000012.12:6963702:C:T
Gene:: MIR141 (Varview), MIR200C (Varview), LOC105369634 (Varview), MIR200CHG (Varview)
Functional Consequence:: non_coding_transcript_variant,2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
G=0./0 (GnomAD)
T=0.000004/1 (TOPMED)
HGVS:: NC_000012.12:g.6963703C>G, NC_000012.12:g.6963703C>T, NW_003871083.2:g.165286C>G, NW_003871083.2:g.165286C>T, NC_000012.11:g.7072866C>G, NC_000012.11:g.7072866C>T, NR_029779.1:n.5C>G, NR_029779.1:n.5C>T

Select item 11692634529.

rs1169263452 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 12:6963766 (GRCh38)
12:7072929 (GRCh37)
Canonical SPDI:: NC_000012.12:6963765:G:T
Gene:: MIR141 (Varview), MIR200C (Varview), LOC105369634 (Varview), MIR200CHG (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000023/6 (TOPMED)
HGVS:: NC_000012.12:g.6963766G>T, NW_003871083.2:g.165349G>T, NC_000012.11:g.7072929G>T, NR_029779.1:n.68G>T

Select item 94267254510.

rs942672545 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 12:6963713 (GRCh38)
12:7072876 (GRCh37)
Canonical SPDI:: NC_000012.12:6963712:A:G
Gene:: MIR141 (Varview), MIR200C (Varview), LOC105369634 (Varview), MIR200CHG (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant,non_coding_transcript_variant
HGVS:: NC_000012.12:g.6963713A>G, NW_003871083.2:g.165296A>G, NC_000012.11:g.7072876A>G, NR_029779.1:n.15A>G

Select item 90413527111.

rs904135271 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 12:6963752 (GRCh38)
12:7072915 (GRCh37)
Canonical SPDI:: NC_000012.12:6963751:G:A,NC_000012.12:6963751:G:C
Gene:: MIR141 (Varview), MIR200C (Varview), LOC105369634 (Varview), MIR200CHG (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000012.12:g.6963752G>A, NC_000012.12:g.6963752G>C, NW_003871083.2:g.165335G>A, NW_003871083.2:g.165335G>C, NC_000012.11:g.7072915G>A, NC_000012.11:g.7072915G>C, NR_029779.1:n.54G>A, NR_029779.1:n.54G>C

Select item 78224924112.

rs782249241 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 12:6963751 (GRCh38)
12:7072914 (GRCh37)
Canonical SPDI:: NC_000012.12:6963750:C:T
Gene:: MIR141 (Varview), MIR200C (Varview), LOC105369634 (Varview), MIR200CHG (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000142/2 (ALFA)
T=0./0 (ALSPAC)
T=0.000029/4 (GnomAD)
T=0.000049/13 (TOPMED)
T=0.000539/2 (TWINSUK)
HGVS:: NC_000012.12:g.6963751C>T, NW_003871083.2:g.165334C>T, NC_000012.11:g.7072914C>T, NR_029779.1:n.53C>T

Select item 78192220913.

rs781922209 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 12:6963729 (GRCh38)
12:7072892 (GRCh37)
Canonical SPDI:: NC_000012.12:6963728:G:A
Gene:: MIR141 (Varview), MIR200C (Varview), LOC105369634 (Varview), MIR200CHG (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0./0 (ExAC)
A=0.00003/8 (TOPMED)
A=0.000057/8 (GnomAD)
A=0.000077/3 (GnomAD_exomes)
HGVS:: NC_000012.12:g.6963729G>A, NW_003871083.2:g.165312G>A, NC_000012.11:g.7072892G>A, NR_029779.1:n.31G>A

Select item 37237290514.

rs372372905 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 12:6963719 (GRCh38)
12:7072882 (GRCh37)
Canonical SPDI:: NC_000012.12:6963718:G:A
Gene:: MIR141 (Varview), MIR200C (Varview), LOC105369634 (Varview), MIR200CHG (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000015/4 (TOPMED)
A=0.000051/2 (GnomAD_exomes)
A=0.0001/1 (GoESP)
A=0.000208/2 (ExAC)
HGVS:: NC_000012.12:g.6963719G>A, NW_003871083.2:g.165302G>A, NC_000012.11:g.7072882G>A, NR_029779.1:n.21G>A

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