SNP Links for Nucleotide (Select 260064035) - SNP

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Links from Nucleotide

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Select item 14902491841.

rs1490249184 [Homo sapiens]

Variant type:: DELINS
Alleles:: GAG>- [Show Flanks]
Chromosome:: 15:76259400 (GRCh38)
15:76551741 (GRCh37)
Canonical SPDI:: NC_000015.10:76259397:AGGAG:AG
Gene:: ETFA (Varview), TYRO3P (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: AG=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000015.10:g.76259400_76259402del, NC_000015.9:g.76551741_76551743del, NG_007077.2:g.57070_57072del, NR_028510.1:n.753_755del, NR_002721.1:n.753_755del

Select item 14872959342.

rs1487295934 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 15:76259748 (GRCh38)
15:76552089 (GRCh37)
Canonical SPDI:: NC_000015.10:76259747:A:G
Gene:: ETFA (Varview), TYRO3P (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000015.10:g.76259748A>G, NC_000015.9:g.76552089A>G, NG_007077.2:g.56722T>C, NR_028510.1:n.405T>C, NR_002721.1:n.405T>C

Select item 14841327713.

rs1484132771 [Homo sapiens]

Variant type:: DELINS
Alleles:: CAGAGGCT>- [Show Flanks]
Chromosome:: 15:76259942 (GRCh38)
15:76552283 (GRCh37)
Canonical SPDI:: NC_000015.10:76259933:CAGAGGCTCAGAGGCT:CAGAGGCT
Gene:: ETFA (Varview), TYRO3P (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CAGAGGCTCAGAGGCT=0.08827/1047 (ALFA)
HGVS:: NC_000015.10:g.76259934CAGAGGCT[1], NC_000015.9:g.76552275CAGAGGCT[1], NG_007077.2:g.56521AGCCTCTG[1], NR_028510.1:n.204AGCCTCTG[1], NR_002721.1:n.204AGCCTCTG[1]

Select item 14834350994.

rs1483435099 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 15:76259464 (GRCh38)
15:76551805 (GRCh37)
Canonical SPDI:: NC_000015.10:76259463:A:C
Gene:: ETFA (Varview), TYRO3P (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000216/4 (ALFA)
C=0.000035/1 (TOMMO)
C=0.000057/15 (TOPMED)
C=0.000057/8 (GnomAD)
C=0.000684/2 (KOREAN)
C=0.000893/4 (Estonian)
C=0.003275/6 (Korea1K)
HGVS:: NC_000015.10:g.76259464A>C, NC_000015.9:g.76551805A>C, NG_007077.2:g.57006T>G, NR_028510.1:n.689T>G, NR_002721.1:n.689T>G

Select item 14784802255.

rs1478480225 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 15:76259548 (GRCh38)
15:76551889 (GRCh37)
Canonical SPDI:: NC_000015.10:76259547:C:G
Gene:: ETFA (Varview), TYRO3P (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
HGVS:: NC_000015.10:g.76259548C>G, NC_000015.9:g.76551889C>G, NG_007077.2:g.56922G>C, NR_028510.1:n.605G>C, NR_002721.1:n.605G>C

Select item 14774606166.

rs1477460616 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 15:76259475 (GRCh38)
15:76551816 (GRCh37)
Canonical SPDI:: NC_000015.10:76259474:G:A
Gene:: ETFA (Varview), TYRO3P (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000014/2 (GnomAD)
A=0.000035/1 (TOMMO)
A=0.000042/11 (TOPMED)
A=0.000546/1 (Korea1K)
A=0.000684/2 (KOREAN)
HGVS:: NC_000015.10:g.76259475G>A, NC_000015.9:g.76551816G>A, NG_007077.2:g.56995C>T, NR_028510.1:n.678C>T, NR_002721.1:n.678C>T

Select item 14734676987.

rs1473467698 [Homo sapiens]

Variant type:: DELINS
Alleles:: GATCATACA>- [Show Flanks]
Chromosome:: 15:76259369 (GRCh38)
15:76551710 (GRCh37)
Canonical SPDI:: NC_000015.10:76259367:AGATCATACA:A
Gene:: ETFA (Varview), TYRO3P (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
-=0.000007/1 (GnomAD)
-=0.000011/3 (TOPMED)
HGVS:: NC_000015.10:g.76259369_76259377del, NC_000015.9:g.76551710_76551718del, NG_007077.2:g.57094_57102del, NR_028510.1:n.777_785del, NR_002721.1:n.777_785del

Select item 14665843058.

rs1466584305 [Homo sapiens]

Variant type:: DELINS
Alleles:: G>- [Show Flanks]
Chromosome:: 15:76259821 (GRCh38)
15:76552162 (GRCh37)
Canonical SPDI:: NC_000015.10:76259820:GGG:GG
Gene:: ETFA (Varview), TYRO3P (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GG=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.76259823del, NC_000015.9:g.76552164del, NG_007077.2:g.56649del, NR_028510.1:n.332del, NR_002721.1:n.332del

Select item 14663671879.

rs1466367187 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 15:76259917 (GRCh38)
15:76552258 (GRCh37)
Canonical SPDI:: NC_000015.10:76259916:A:G
Gene:: ETFA (Varview), TYRO3P (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.072679/1187 (ALFA)
G=0.008599/144 (TOMMO)
G=0.011294/33 (KOREAN)
G=0.012009/22 (Korea1K)
G=0.024361/2684 (GnomAD)
G=0.069488/445 (1000Genomes)
A=0.5/5 (SGDP_PRJ)
HGVS:: NC_000015.10:g.76259917A>G, NC_000015.9:g.76552258A>G, NG_007077.2:g.56553T>C, NR_028510.1:n.236T>C, NR_002721.1:n.236T>C

Select item 146512353510.

rs1465123535 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 15:76259809 (GRCh38)
15:76552150 (GRCh37)
Canonical SPDI:: NC_000015.10:76259808:T:C
Gene:: ETFA (Varview), TYRO3P (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.76259809T>C, NC_000015.9:g.76552150T>C, NG_007077.2:g.56661A>G, NR_028510.1:n.344A>G, NR_002721.1:n.344A>G

Select item 146307252711.

rs1463072527 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 15:76259910 (GRCh38)
15:76552251 (GRCh37)
Canonical SPDI:: NC_000015.10:76259909:G:C
Gene:: ETFA (Varview), TYRO3P (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.00031/2 (1000Genomes)
HGVS:: NC_000015.10:g.76259910G>C, NC_000015.9:g.76552251G>C, NG_007077.2:g.56560C>G, NR_028510.1:n.243C>G, NR_002721.1:n.243C>G

Select item 145911742912.

rs1459117429 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 15:76259562 (GRCh38)
15:76551903 (GRCh37)
Canonical SPDI:: NC_000015.10:76259561:G:A
Gene:: ETFA (Varview), TYRO3P (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.00003/8 (TOPMED)
A=0.000036/5 (GnomAD)
HGVS:: NC_000015.10:g.76259562G>A, NC_000015.9:g.76551903G>A, NG_007077.2:g.56908C>T, NR_028510.1:n.591C>T, NR_002721.1:n.591C>T

Select item 145656220013.

rs1456562200 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 15:76259731 (GRCh38)
15:76552072 (GRCh37)
Canonical SPDI:: NC_000015.10:76259730:T:C
Gene:: ETFA (Varview), TYRO3P (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
T=0.5/1 (SGDP_PRJ)
HGVS:: NC_000015.10:g.76259731T>C, NC_000015.9:g.76552072T>C, NG_007077.2:g.56739A>G, NR_028510.1:n.422A>G, NR_002721.1:n.422A>G

Select item 145239053514.

rs1452390535 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 15:76259486 (GRCh38)
15:76551827 (GRCh37)
Canonical SPDI:: NC_000015.10:76259485:A:G
Gene:: ETFA (Varview), TYRO3P (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000011/3 (TOPMED)
HGVS:: NC_000015.10:g.76259486A>G, NC_000015.9:g.76551827A>G, NG_007077.2:g.56984T>C, NR_028510.1:n.667T>C, NR_002721.1:n.667T>C

Select item 144980767015.

rs1449807670 [Homo sapiens]

Variant type:: DELINS
Alleles:: AG>- [Show Flanks]
Chromosome:: 15:76259688 (GRCh38)
15:76552029 (GRCh37)
Canonical SPDI:: NC_000015.10:76259684:GAGAG:GAG
Gene:: ETFA (Varview), TYRO3P (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: GAG=0.000084/1 (ALFA)
-=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.76259686AG[1], NC_000015.9:g.76552027AG[1], NG_007077.2:g.56782TC[1], NR_028510.1:n.465TC[1], NR_002721.1:n.465TC[1]

Select item 144825843116.

rs1448258431 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 15:76259878 (GRCh38)
15:76552219 (GRCh37)
Canonical SPDI:: NC_000015.10:76259877:G:A
Gene:: ETFA (Varview), TYRO3P (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.76259878G>A, NC_000015.9:g.76552219G>A, NG_007077.2:g.56592C>T, NR_028510.1:n.275C>T, NR_002721.1:n.275C>T

Select item 144707325817.

rs1447073258 [Homo sapiens]

Variant type:: DEL
Alleles:: A>- [Show Flanks]
Chromosome:: 15:76259935 (GRCh38)
15:76552276 (GRCh37)
Canonical SPDI:: NC_000015.10:76259934:A:
Gene:: ETFA (Varview), TYRO3P (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0.13534/615 (ALFA)
-=0.01055/177 (TOMMO)
-=0.01474/27 (Korea1K)
HGVS:: NC_000015.10:g.76259935del, NC_000015.9:g.76552276del, NG_007077.2:g.56535del, NR_028510.1:n.218del, NR_002721.1:n.218del

Select item 144627888218.

rs1446278882 [Homo sapiens]

Variant type:: DELINS
Alleles:: AGGTCCCCATGC>- [Show Flanks]
Chromosome:: 15:76259868 (GRCh38)
15:76552209 (GRCh37)
Canonical SPDI:: NC_000015.10:76259864:TGCAGGTCCCCATGC:TGC
Gene:: ETFA (Varview), TYRO3P (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: TGC=0./0 (ALFA)
-=0.000011/3 (TOPMED)
HGVS:: NC_000015.10:g.76259868_76259879del, NC_000015.9:g.76552209_76552220del, NG_007077.2:g.56594_56605del, NR_028510.1:n.277_288del, NR_002721.1:n.277_288del

Select item 144101844519.

rs1441018445 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 15:76260002 (GRCh38)
15:76552343 (GRCh37)
Canonical SPDI:: NC_000015.10:76260001:G:A
Gene:: ETFA (Varview), TYRO3P (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0.000169/2 (ALFA)
A=0.00015/21 (GnomAD)
HGVS:: NC_000015.10:g.76260002G>A, NC_000015.9:g.76552343G>A, NG_007077.2:g.56468C>T, NR_028510.1:n.151C>T, NR_002721.1:n.151C>T

Select item 143867993520.

rs1438679935 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 15:76259912 (GRCh38)
15:76552253 (GRCh37)
Canonical SPDI:: NC_000015.10:76259911:G:A
Gene:: ETFA (Varview), TYRO3P (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000015.10:g.76259912G>A, NC_000015.9:g.76552253G>A, NG_007077.2:g.56558C>T, NR_028510.1:n.241C>T, NR_002721.1:n.241C>T