SNP Links for Nucleotide (Select 237874234) - SNP

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Links from Nucleotide

Items: 1 to 20 of 4707

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Select item 14913730991.

rs1491373099 has merged into rs111665955 [Homo sapiens]

Variant type:: DELINS
Alleles:: TT>- [Show Flanks]
Chromosome:: 2:218881571 (GRCh38)
2:219746293 (GRCh37)
Canonical SPDI:: NC_000002.12:218881568:TTTT:TT
Gene:: WNT10A (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTT=0./0 (ALFA)
-=0.000216/30 (GnomAD)
-=0.000425/7 (TOMMO)
-=0.030475/113 (TWINSUK)
-=0.038402/148 (ALSPAC)
-=0.042031/77 (Korea1K)
HGVS:: NC_000002.12:g.218881571_218881572del, NC_000002.11:g.219746293_219746294del, NG_012179.1:g.6039_6040del

Select item 14911906872.

rs1491190687 [Homo sapiens]

Variant type:: DELINS
Alleles:: CG>- [Show Flanks]
Chromosome:: 2:218880483 (GRCh38)
2:219745205 (GRCh37)
Canonical SPDI:: NC_000002.12:218880481:GCG:G
Gene:: WNT10A (Varview)
Functional Consequence:: upstream_transcript_variant,genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.03659/434 (ALFA)
-=0.00088/12 (TOMMO)
-=0.04841/310 (1000Genomes)
-=0.16786/6099 (GnomAD)
HGVS:: NC_000002.12:g.218880483_218880484del, NC_000002.11:g.219745205_219745206del, NG_012179.1:g.4951_4952del

Select item 14909723083.

rs1490972308 [Homo sapiens]

Variant type:: DELINS
Alleles:: C>-,CC [Show Flanks]
Chromosome:: 2:218888325 (GRCh38)
2:219753047 (GRCh37)
Canonical SPDI:: NC_000002.12:218888324:CCCCC:CCCC,NC_000002.12:218888324:CCCCC:CCCCCC
Gene:: WNT10A (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CCCCCC=0./0 (ALFA)
HGVS:: NC_000002.12:g.218888329del, NC_000002.12:g.218888329dup, NC_000002.11:g.219753051del, NC_000002.11:g.219753051dup, NG_012179.1:g.12797del, NG_012179.1:g.12797dup

Select item 14906544114.

rs1490654411 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 2:218892419 (GRCh38)
2:219757141 (GRCh37)
Canonical SPDI:: NC_000002.12:218892418:G:C
Gene:: WNT10A (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000021/3 (GnomAD)
HGVS:: NC_000002.12:g.218892419G>C, NC_000002.11:g.219757141G>C, NG_012179.1:g.16887G>C

Select item 14902933055.

rs1490293305 has merged into rs995033795 [Homo sapiens]

Variant type:: DELINS
Alleles:: G>-,GG,GGG,GGGG,GGGGG [Show Flanks]
Chromosome:: 2:218880481 (GRCh38)
2:219745203 (GRCh37)
Canonical SPDI:: NC_000002.12:218880480:GG:G,NC_000002.12:218880480:GG:GGG,NC_000002.12:218880480:GG:GGGG,NC_000002.12:218880480:GG:GGGGG,NC_000002.12:218880480:GG:GGGGGG
Gene:: WNT10A (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GGG=0./0 (ALFA)
-=0.000019/5 (TOPMED)
GGG=0.000091/1 (TOMMO)
HGVS:: NC_000002.12:g.218880482del, NC_000002.12:g.218880482dup, NC_000002.12:g.218880481_218880482dup, NC_000002.12:g.218880482_218880483insGGG, NC_000002.12:g.218880482_218880483insGGGG, NC_000002.11:g.219745204del, NC_000002.11:g.219745204dup, NC_000002.11:g.219745203_219745204dup, NC_000002.11:g.219745204_219745205insGGG, NC_000002.11:g.219745204_219745205insGGGG, NG_012179.1:g.4950del, NG_012179.1:g.4950dup, NG_012179.1:g.4949_4950dup, NG_012179.1:g.4950_4951insGGG, NG_012179.1:g.4950_4951insGGGG

Select item 14902744436.

rs1490274443 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 2:218881018 (GRCh38)
2:219745740 (GRCh37)
Canonical SPDI:: NC_000002.12:218881017:C:G
Gene:: WNT10A (Varview)
Functional Consequence:: intron_variant,missense_variant,coding_sequence_variant
Validated:: by frequency
MAF:: G=0.000005/1 (GnomAD_exomes)
HGVS:: NC_000002.12:g.218881018C>G, NC_000002.11:g.219745740C>G, NG_012179.1:g.5486C>G, NM_025216.3:c.23C>G, NM_025216.2:c.23C>G, XM_011511930.2:c.23C>G, XM_011511930.1:c.23C>G, NP_079492.2:p.Pro8Arg, XP_011510232.1:p.Pro8Arg

Select item 14902052987.

rs1490205298 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 2:218890932 (GRCh38)
2:219755654 (GRCh37)
Canonical SPDI:: NC_000002.12:218890931:G:A
Gene:: WNT10A (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.218890932G>A, NC_000002.11:g.219755654G>A, NG_012179.1:g.15400G>A

Select item 14896449708.

rs1489644970 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 2:218889534 (GRCh38)
2:219754256 (GRCh37)
Canonical SPDI:: NC_000002.12:218889533:C:G
Gene:: WNT10A (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.218889534C>G, NC_000002.11:g.219754256C>G, NG_012179.1:g.14002C>G

Select item 14895693259.

rs1489569325 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 2:218892305 (GRCh38)
2:219757027 (GRCh37)
Canonical SPDI:: NC_000002.12:218892304:A:C
Gene:: WNT10A (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.23214/39 (GnomAD)
A=0.5/1 (SGDP_PRJ)
HGVS:: NC_000002.12:g.218892305A>C, NC_000002.11:g.219757027A>C, NG_012179.1:g.16773A>C

Select item 148944193010.

rs1489441930 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 2:218883574 (GRCh38)
2:219748296 (GRCh37)
Canonical SPDI:: NC_000002.12:218883573:C:T
Gene:: WNT10A (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.218883574C>T, NC_000002.11:g.219748296C>T, NG_012179.1:g.8042C>T

Select item 148929342711.

rs1489293427 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 2:218894942 (GRCh38)
2:219759664 (GRCh37)
Canonical SPDI:: NC_000002.12:218894941:G:C
Gene:: LOC105373882 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000015/4 (TOPMED)
C=0.000036/5 (GnomAD)
C=0.000312/2 (1000Genomes)
HGVS:: NC_000002.12:g.218894942G>C, NC_000002.11:g.219759664G>C, NG_012179.1:g.19410G>C

Select item 148918546912.

rs1489185469 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 2:218879417 (GRCh38)
2:219744139 (GRCh37)
Canonical SPDI:: NC_000002.12:218879416:G:A
Gene:: WNT10A (Varview)
Functional Consequence:: upstream_transcript_variant,genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000002.12:g.218879417G>A, NC_000002.11:g.219744139G>A, NG_012179.1:g.3885G>A

Select item 148914339413.

rs1489143394 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 2:218877741 (GRCh38)
2:219742463 (GRCh37)
Canonical SPDI:: NC_000002.12:218877740:A:C
Gene:: WNT10A (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000142/2 (ALFA)
C=0.0001/14 (GnomAD)
C=0.000102/27 (TOPMED)
HGVS:: NC_000002.12:g.218877741A>C, NC_000002.11:g.219742463A>C, NG_012179.1:g.2209A>C

Select item 148913806714.

rs1489138067 [Homo sapiens]

Variant type:: DELINS
Alleles:: T>- [Show Flanks]
Chromosome:: 2:218893886 (GRCh38)
2:219758608 (GRCh37)
Canonical SPDI:: NC_000002.12:218893885:TT:T
Gene:: WNT10A (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TT=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.218893887del, NC_000002.11:g.219758609del, NG_012179.1:g.18355del, NM_025216.3:c.*616del, NM_025216.2:c.*616del, XM_011511929.3:c.*616del, XM_011511929.2:c.*616del, XM_011511929.1:c.*616del, XM_011511930.2:c.*590del, XM_011511930.1:c.*590del

Select item 148899619415.

rs1488996194 [Homo sapiens]

Variant type:: DELINS
Alleles:: G>-,GG [Show Flanks]
Chromosome:: 2:218879662 (GRCh38)
2:219744384 (GRCh37)
Canonical SPDI:: NC_000002.12:218879661:GG:G,NC_000002.12:218879661:GG:GGG
Gene:: WNT10A (Varview)
Functional Consequence:: upstream_transcript_variant,genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GGG=0./0 (ALFA)
-=0.000014/2 (GnomAD)
HGVS:: NC_000002.12:g.218879663del, NC_000002.12:g.218879663dup, NC_000002.11:g.219744385del, NC_000002.11:g.219744385dup, NG_012179.1:g.4131del, NG_012179.1:g.4131dup

Select item 148887190116.

rs1488871901 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 2:218875715 (GRCh38)
2:219740437 (GRCh37)
Canonical SPDI:: NC_000002.12:218875714:G:A
Gene:: WNT10A (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000002.12:g.218875715G>A, NC_000002.11:g.219740437G>A, NG_046932.1:g.20893G>A, NG_012179.1:g.183G>A

Select item 148845919617.

rs1488459196 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 2:218883066 (GRCh38)
2:219747788 (GRCh37)
Canonical SPDI:: NC_000002.12:218883065:T:C
Gene:: WNT10A (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000008/2 (TOPMED)
HGVS:: NC_000002.12:g.218883066T>C, NC_000002.11:g.219747788T>C, NG_012179.1:g.7534T>C

Select item 148832763418.

rs1488327634 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 2:218892764 (GRCh38)
2:219757486 (GRCh37)
Canonical SPDI:: NC_000002.12:218892763:C:T
Gene:: WNT10A (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000008/2 (TOPMED)
HGVS:: NC_000002.12:g.218892764C>T, NC_000002.11:g.219757486C>T, NG_012179.1:g.17232C>T

Select item 148824127519.

rs1488241275 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 2:218877519 (GRCh38)
2:219742241 (GRCh37)
Canonical SPDI:: NC_000002.12:218877518:C:T
Gene:: WNT10A (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000008/2 (TOPMED)
HGVS:: NC_000002.12:g.218877519C>T, NC_000002.11:g.219742241C>T, NG_012179.1:g.1987C>T

Select item 148801954820.

rs1488019548 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 2:218890240 (GRCh38)
2:219754962 (GRCh37)
Canonical SPDI:: NC_000002.12:218890239:G:A
Gene:: WNT10A (Varview)
Functional Consequence:: stop_gained,intron_variant,coding_sequence_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.0002/1 (ALFA)
A=0.0002/1 (Estonian)
HGVS:: NC_000002.12:g.218890240G>A, NC_000002.11:g.219754962G>A, NG_012179.1:g.14708G>A, NM_025216.3:c.633G>A, NM_025216.2:c.633G>A, XM_011511929.3:c.537G>A, XM_011511929.2:c.537G>A, XM_011511929.1:c.537G>A, NP_079492.2:p.Trp211Ter, XP_011510231.1:p.Trp179Ter

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