SNP Links for Nucleotide (Select 223972640) - SNP

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Links from Nucleotide

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Select item 14895314461.

rs1489531446 [Homo sapiens]

Variant type:: DELINS
Alleles:: T>- [Show Flanks]
Chromosome:: 10:118209830 (GRCh38)
10:119969342 (GRCh37)
Canonical SPDI:: NC_000010.11:118209829:TTT:TT
Gene:: CASC2 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TT=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.118209832del, NC_000010.10:g.119969344del, NR_026939.1:n.2952del, NR_026940.1:n.2852del

Select item 14891769912.

rs1489176991 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 10:118209270 (GRCh38)
10:119968782 (GRCh37)
Canonical SPDI:: NC_000010.11:118209269:G:A
Gene:: CASC2 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.118209270G>A, NC_000010.10:g.119968782G>A, NG_074526.1:g.114G>A, NR_026939.1:n.2390G>A, NR_026940.1:n.2290G>A

Select item 14881946903.

rs1488194690 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 10:118209750 (GRCh38)
10:119969262 (GRCh37)
Canonical SPDI:: NC_000010.11:118209749:G:C
Gene:: CASC2 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.118209750G>C, NC_000010.10:g.119969262G>C, NR_026939.1:n.2870G>C, NR_026940.1:n.2770G>C

Select item 14869825174.

rs1486982517 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 10:118052188 (GRCh38)
10:119811699 (GRCh37)
Canonical SPDI:: NC_000010.11:118052187:A:C
Gene:: CASC2 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000008/2 (TOPMED)
HGVS:: NC_000010.11:g.118052188A>C, NC_000010.10:g.119811699A>C, NM_178816.2:c.*17A>C, NR_026939.1:n.447A>C, NR_026940.1:n.447A>C, NR_026941.1:n.447A>C, NM_201377.1:c.-22A>C

Select item 14868803295.

rs1486880329 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 10:118209267 (GRCh38)
10:119968779 (GRCh37)
Canonical SPDI:: NC_000010.11:118209266:A:T
Gene:: CASC2 (Varview)
Functional Consequence:: non_coding_transcript_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000011/3 (TOPMED)
HGVS:: NC_000010.11:g.118209267A>T, NC_000010.10:g.119968779A>T, NG_074526.1:g.111A>T, NR_026939.1:n.2387A>T, NR_026940.1:n.2287A>T

Select item 14868134476.

rs1486813447 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 10:118207621 (GRCh38)
10:119967133 (GRCh37)
Canonical SPDI:: NC_000010.11:118207620:G:C
Gene:: CASC2 (Varview)
Functional Consequence:: non_coding_transcript_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.118207621G>C, NC_000010.10:g.119967133G>C, NR_026939.1:n.741G>C, NR_026940.1:n.641G>C, NM_201377.1:c.273G>C

Select item 14868041937.

rs1486804193 [Homo sapiens]

Variant type:: DELINS
Alleles:: C>- [Show Flanks]
Chromosome:: 10:118210136 (GRCh38)
10:119969648 (GRCh37)
Canonical SPDI:: NC_000010.11:118210135:CC:C
Gene:: CASC2 (Varview)
Functional Consequence:: non_coding_transcript_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CC=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.118210137del, NC_000010.10:g.119969649del, NR_026939.1:n.3257del, NR_026940.1:n.3157del

Select item 14847040878.

rs1484704087 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G,T [Show Flanks]
Chromosome:: 10:118207547 (GRCh38)
10:119967059 (GRCh37)
Canonical SPDI:: NC_000010.11:118207546:A:G,NC_000010.11:118207546:A:T
Gene:: CASC2 (Varview)
Functional Consequence:: non_coding_transcript_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.118207547A>G, NC_000010.11:g.118207547A>T, NC_000010.10:g.119967059A>G, NC_000010.10:g.119967059A>T, NR_026939.1:n.667A>G, NR_026939.1:n.667A>T, NR_026940.1:n.567A>G, NR_026940.1:n.567A>T, NM_201377.1:c.199A>G, NM_201377.1:c.199A>T

Select item 14846407069.

rs1484640706 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 10:118207839 (GRCh38)
10:119967351 (GRCh37)
Canonical SPDI:: NC_000010.11:118207838:C:T
Gene:: CASC2 (Varview)
Functional Consequence:: non_coding_transcript_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000026/7 (TOPMED)
HGVS:: NC_000010.11:g.118207839C>T, NC_000010.10:g.119967351C>T, NR_026939.1:n.959C>T, NR_026940.1:n.859C>T

Select item 148258499210.

rs1482584992 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 10:118208112 (GRCh38)
10:119967624 (GRCh37)
Canonical SPDI:: NC_000010.11:118208111:T:G
Gene:: CASC2 (Varview)
Functional Consequence:: non_coding_transcript_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.118208112T>G, NC_000010.10:g.119967624T>G, NR_026939.1:n.1232T>G, NR_026940.1:n.1132T>G

Select item 148247392011.

rs1482473920 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 10:118209669 (GRCh38)
10:119969181 (GRCh37)
Canonical SPDI:: NC_000010.11:118209668:A:G
Gene:: CASC2 (Varview)
Functional Consequence:: non_coding_transcript_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000010.11:g.118209669A>G, NC_000010.10:g.119969181A>G, NR_026939.1:n.2789A>G, NR_026940.1:n.2689A>G

Select item 148028389512.

rs1480283895 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 10:118208438 (GRCh38)
10:119967950 (GRCh37)
Canonical SPDI:: NC_000010.11:118208437:T:C
Gene:: CASC2 (Varview)
Functional Consequence:: non_coding_transcript_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.118208438T>C, NC_000010.10:g.119967950T>C, NR_026939.1:n.1558T>C, NR_026940.1:n.1458T>C

Select item 147933265013.

rs1479332650 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 10:118208413 (GRCh38)
10:119967925 (GRCh37)
Canonical SPDI:: NC_000010.11:118208412:T:C
Gene:: CASC2 (Varview)
Functional Consequence:: non_coding_transcript_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.118208413T>C, NC_000010.10:g.119967925T>C, NR_026939.1:n.1533T>C, NR_026940.1:n.1433T>C

Select item 147926230014.

rs1479262300 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 10:118209003 (GRCh38)
10:119968515 (GRCh37)
Canonical SPDI:: NC_000010.11:118209002:G:A
Gene:: CASC2 (Varview)
Functional Consequence:: non_coding_transcript_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000010.11:g.118209003G>A, NC_000010.10:g.119968515G>A, NR_026939.1:n.2123G>A, NR_026940.1:n.2023G>A

Select item 147800829615.

rs1478008296 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 10:118049575 (GRCh38)
10:119809086 (GRCh37)
Canonical SPDI:: NC_000010.11:118049574:C:T
Gene:: CASC2 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000010.11:g.118049575C>T, NC_000010.10:g.119809086C>T, NM_178816.2:c.148C>T, NR_026939.1:n.347C>T, NR_026940.1:n.347C>T, NR_026941.1:n.347C>T, NM_201377.1:c.-122C>T, NM_178816.1:c.148C>T

Select item 147769438916.

rs1477694389 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAG>- [Show Flanks]
Chromosome:: 10:118209806 (GRCh38)
10:119969318 (GRCh37)
Canonical SPDI:: NC_000010.11:118209802:AAGAAG:AAG
Gene:: CASC2 (Varview)
Functional Consequence:: non_coding_transcript_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAGAAG=0./0 (ALFA)
-=0.0006/10 (TOMMO)
-=0.00109/2 (Korea1K)
HGVS:: NC_000010.11:g.118209803AAG[1], NC_000010.10:g.119969315AAG[1], NR_026939.1:n.2923AAG[1], NR_026940.1:n.2823AAG[1]

Select item 147652620917.

rs1476526209 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 10:118208252 (GRCh38)
10:119967764 (GRCh37)
Canonical SPDI:: NC_000010.11:118208251:T:C
Gene:: CASC2 (Varview)
Functional Consequence:: non_coding_transcript_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.118208252T>C, NC_000010.10:g.119967764T>C, NR_026939.1:n.1372T>C, NR_026940.1:n.1272T>C

Select item 147631859618.

rs1476318596 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 10:118209034 (GRCh38)
10:119968546 (GRCh37)
Canonical SPDI:: NC_000010.11:118209033:C:A
Gene:: CASC2 (Varview)
Functional Consequence:: non_coding_transcript_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.118209034C>A, NC_000010.10:g.119968546C>A, NR_026939.1:n.2154C>A, NR_026940.1:n.2054C>A

Select item 147597649819.

rs1475976498 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 10:118209901 (GRCh38)
10:119969413 (GRCh37)
Canonical SPDI:: NC_000010.11:118209900:G:A
Gene:: CASC2 (Varview)
Functional Consequence:: non_coding_transcript_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
A=0.000071/1 (TOMMO)
A=0.000546/1 (Korea1K)
HGVS:: NC_000010.11:g.118209901G>A, NC_000010.10:g.119969413G>A, NR_026939.1:n.3021G>A, NR_026940.1:n.2921G>A

Select item 147325325420.

rs1473253254 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 10:118209266 (GRCh38)
10:119968778 (GRCh37)
Canonical SPDI:: NC_000010.11:118209265:G:T
Gene:: CASC2 (Varview)
Functional Consequence:: non_coding_transcript_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000011/3 (TOPMED)
HGVS:: NC_000010.11:g.118209266G>T, NC_000010.10:g.119968778G>T, NG_074526.1:g.110G>T, NR_026939.1:n.2386G>T, NR_026940.1:n.2286G>T