SNP Links for Nucleotide (Select 223718294) - SNP

Links from Nucleotide

Items: 1 to 20 of 498

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Select item 14905595951.

rs1490559595 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 11:71904130 (GRCh38)
11:71615176 (GRCh37)
Canonical SPDI:: NC_000011.10:71904129:A:G
Gene:: XNDC1N (Varview), XNDC1N-ZNF705EP-ALG1L9P (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
G=0.000546/1 (Korea1K)
HGVS:: NC_000011.10:g.71904130A>G, NC_000011.9:g.71615176A>G, NG_002280.2:g.1327A>G

Select item 14896680352.

rs1489668035 [Homo sapiens]

Variant type:: DELINS
Alleles:: C>- [Show Flanks]
Chromosome:: 11:71903768 (GRCh38)
11:71614814 (GRCh37)
Canonical SPDI:: NC_000011.10:71903767:CC:C
Gene:: XNDC1N (Varview), XNDC1N-ZNF705EP-ALG1L9P (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: CC=0./0 (ALFA)
HGVS:: NC_000011.10:g.71903769del, NC_000011.9:g.71614815del, NG_002280.2:g.966del

Select item 14893544683.

rs1489354468 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:71903555 (GRCh38)
11:71614601 (GRCh37)
Canonical SPDI:: NC_000011.10:71903554:C:T
Gene:: XNDC1N (Varview), XNDC1N-ZNF705EP-ALG1L9P (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000019/5 (TOPMED)
HGVS:: NC_000011.10:g.71903555C>T, NC_000011.9:g.71614601C>T, NG_002280.2:g.752C>T

Select item 14880780164.

rs1488078016 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 11:71903539 (GRCh38)
11:71614585 (GRCh37)
Canonical SPDI:: NC_000011.10:71903538:G:A
Gene:: XNDC1N (Varview), XNDC1N-ZNF705EP-ALG1L9P (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.00025/3 (ALFA)
A=0.00055/1 (Korea1K)
A=0.00125/8 (1000Genomes)
A=0.00304/51 (TOMMO)
A=0.00308/9 (KOREAN)
HGVS:: NC_000011.10:g.71903539G>A, NC_000011.9:g.71614585G>A, NG_002280.2:g.736G>A

Select item 14867477515.

rs1486747751 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 11:71902939 (GRCh38)
11:71613985 (GRCh37)
Canonical SPDI:: NC_000011.10:71902938:A:C
Gene:: XNDC1N (Varview), XNDC1N-ZNF705EP-ALG1L9P (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000008/2 (TOPMED)
HGVS:: NC_000011.10:g.71902939A>C, NC_000011.9:g.71613985A>C, NG_002280.2:g.136A>C

Select item 14864370816.

rs1486437081 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 11:71902873 (GRCh38)
11:71613919 (GRCh37)
Canonical SPDI:: NC_000011.10:71902872:T:C
Gene:: XNDC1N (Varview), XNDC1N-ZNF705EP-ALG1L9P (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.71902873T>C, NC_000011.9:g.71613919T>C, NG_002280.2:g.70T>C

Select item 14850870637.

rs1485087063 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:71903227 (GRCh38)
11:71614273 (GRCh37)
Canonical SPDI:: NC_000011.10:71903226:C:T
Gene:: XNDC1N (Varview), XNDC1N-ZNF705EP-ALG1L9P (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000015/4 (TOPMED)
HGVS:: NC_000011.10:g.71903227C>T, NC_000011.9:g.71614273C>T, NG_002280.2:g.424C>T

Select item 14823435758.

rs1482343575 has merged into rs367890404 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTTT>-,T,TT,TTT,TTTTT [Show Flanks]
Chromosome:: 11:71903646 (GRCh38)
11:71614692 (GRCh37)
Canonical SPDI:: NC_000011.10:71903639:TTTTTTTTTT:TTTTTT,NC_000011.10:71903639:TTTTTTTTTT:TTTTTTT,NC_000011.10:71903639:TTTTTTTTTT:TTTTTTTT,NC_000011.10:71903639:TTTTTTTTTT:TTTTTTTTT,NC_000011.10:71903639:TTTTTTTTTT:TTTTTTTTTTT
Gene:: XNDC1N (Varview), XNDC1N-ZNF705EP-ALG1L9P (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTT=0./0 (ALFA)
-=0.005/3 (NorthernSweden)
HGVS:: NC_000011.10:g.71903646_71903649del, NC_000011.10:g.71903647_71903649del, NC_000011.10:g.71903648_71903649del, NC_000011.10:g.71903649del, NC_000011.10:g.71903649dup, NC_000011.9:g.71614692_71614695del, NC_000011.9:g.71614693_71614695del, NC_000011.9:g.71614694_71614695del, NC_000011.9:g.71614695del, NC_000011.9:g.71614695dup, NG_002280.2:g.843_846del, NG_002280.2:g.844_846del, NG_002280.2:g.845_846del, NG_002280.2:g.846del, NG_002280.2:g.846dup

Select item 14816417329.

rs1481641732 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C,T [Show Flanks]
Chromosome:: 11:71903973 (GRCh38)
11:71615019 (GRCh37)
Canonical SPDI:: NC_000011.10:71903972:G:A,NC_000011.10:71903972:G:C,NC_000011.10:71903972:G:T
Gene:: XNDC1N (Varview), XNDC1N-ZNF705EP-ALG1L9P (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0.000014/2 (GnomAD)
A=0.000015/4 (TOPMED)
HGVS:: NC_000011.10:g.71903973G>A, NC_000011.10:g.71903973G>C, NC_000011.10:g.71903973G>T, NC_000011.9:g.71615019G>A, NC_000011.9:g.71615019G>C, NC_000011.9:g.71615019G>T, NG_002280.2:g.1170G>A, NG_002280.2:g.1170G>C, NG_002280.2:g.1170G>T

Select item 148063995610.

rs1480639956 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C,T [Show Flanks]
Chromosome:: 11:71904207 (GRCh38)
11:71615253 (GRCh37)
Canonical SPDI:: NC_000011.10:71904206:G:A,NC_000011.10:71904206:G:C,NC_000011.10:71904206:G:T
Gene:: XNDC1N (Varview), XNDC1N-ZNF705EP-ALG1L9P (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
C=0.000035/1 (TOMMO)
HGVS:: NC_000011.10:g.71904207G>A, NC_000011.10:g.71904207G>C, NC_000011.10:g.71904207G>T, NC_000011.9:g.71615253G>A, NC_000011.9:g.71615253G>C, NC_000011.9:g.71615253G>T, NG_002280.2:g.1404G>A, NG_002280.2:g.1404G>C, NG_002280.2:g.1404G>T

Select item 147996850111.

rs1479968501 [Homo sapiens]

Variant type:: DEL
Alleles:: T>- [Show Flanks]
Chromosome:: 11:71904034 (GRCh38)
11:71615080 (GRCh37)
Canonical SPDI:: NC_000011.10:71904033:T:
Gene:: XNDC1N (Varview), XNDC1N-ZNF705EP-ALG1L9P (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.000004/1 (GnomAD_exomes)
-=0.000004/1 (TOPMED)
HGVS:: NC_000011.10:g.71904034del, NC_000011.9:g.71615080del, NG_002280.2:g.1231del

Select item 147888493612.

rs1478884936 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 11:71904338 (GRCh38)
11:71615384 (GRCh37)
Canonical SPDI:: NC_000011.10:71904337:A:G
Gene:: XNDC1N (Varview), XNDC1N-ZNF705EP-ALG1L9P (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000011/3 (TOPMED)
HGVS:: NC_000011.10:g.71904338A>G, NC_000011.9:g.71615384A>G, NG_002280.2:g.1535A>G

Select item 147873275613.

rs1478732756 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 11:71903001 (GRCh38)
11:71614047 (GRCh37)
Canonical SPDI:: NC_000011.10:71903000:A:G
Gene:: XNDC1N (Varview), XNDC1N-ZNF705EP-ALG1L9P (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000008/2 (TOPMED)
HGVS:: NC_000011.10:g.71903001A>G, NC_000011.9:g.71614047A>G, NG_002280.2:g.198A>G

Select item 147763900214.

rs1477639002 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:71903399 (GRCh38)
11:71614445 (GRCh37)
Canonical SPDI:: NC_000011.10:71903398:C:T
Gene:: XNDC1N (Varview), XNDC1N-ZNF705EP-ALG1L9P (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.00253/30 (ALFA)
HGVS:: NC_000011.10:g.71903399C>T, NC_000011.9:g.71614445C>T, NG_002280.2:g.596C>T

Select item 147758864315.

rs1477588643 [Homo sapiens]

Variant type:: DELINS
Alleles:: AATATC>- [Show Flanks]
Chromosome:: 11:71904127 (GRCh38)
11:71615173 (GRCh37)
Canonical SPDI:: NC_000011.10:71904124:TCAATATC:TC
Gene:: XNDC1N (Varview), XNDC1N-ZNF705EP-ALG1L9P (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: TC=0.000142/2 (ALFA)
-=0.000023/6 (TOPMED)
HGVS:: NC_000011.10:g.71904127_71904132del, NC_000011.9:g.71615173_71615178del, NG_002280.2:g.1324_1329del

Select item 147549981116.

rs1475499811 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 11:71903974 (GRCh38)
11:71615020 (GRCh37)
Canonical SPDI:: NC_000011.10:71903973:G:A
Gene:: XNDC1N (Varview), XNDC1N-ZNF705EP-ALG1L9P (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000011.10:g.71903974G>A, NC_000011.9:g.71615020G>A, NG_002280.2:g.1171G>A

Select item 147507859317.

rs1475078593 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 11:71903336 (GRCh38)
11:71614382 (GRCh37)
Canonical SPDI:: NC_000011.10:71903335:T:C
Gene:: XNDC1N (Varview), XNDC1N-ZNF705EP-ALG1L9P (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000011.10:g.71903336T>C, NC_000011.9:g.71614382T>C, NG_002280.2:g.533T>C

Select item 147202317618.

rs1472023176 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:71903552 (GRCh38)
11:71614598 (GRCh37)
Canonical SPDI:: NC_000011.10:71903551:C:T
Gene:: XNDC1N (Varview), XNDC1N-ZNF705EP-ALG1L9P (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000169/2 (ALFA)
T=0.000072/10 (GnomAD)
T=0.001249/8 (1000Genomes)
T=0.002738/8 (KOREAN)
T=0.003043/51 (TOMMO)
HGVS:: NC_000011.10:g.71903552C>T, NC_000011.9:g.71614598C>T, NG_002280.2:g.749C>T

Select item 147143642119.

rs1471436421 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: 11:71903652 (GRCh38)
11:71614698 (GRCh37)
Canonical SPDI:: NC_000011.10:71903651:T:C,NC_000011.10:71903651:T:G
Gene:: XNDC1N (Varview), XNDC1N-ZNF705EP-ALG1L9P (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.00211/25 (ALFA)
G=0.00004/0 (TOMMO)
C=0.03613/235 (GnomAD)
HGVS:: NC_000011.10:g.71903652T>C, NC_000011.10:g.71903652T>G, NC_000011.9:g.71614698T>C, NC_000011.9:g.71614698T>G, NG_002280.2:g.849T>C, NG_002280.2:g.849T>G

Select item 146792728420.

rs1467927284 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 11:71903466 (GRCh38)
11:71614512 (GRCh37)
Canonical SPDI:: NC_000011.10:71903465:C:G
Gene:: XNDC1N (Varview), XNDC1N-ZNF705EP-ALG1L9P (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000038/10 (TOPMED)
G=0.000064/9 (GnomAD)
HGVS:: NC_000011.10:g.71903466C>G, NC_000011.9:g.71614512C>G, NG_002280.2:g.663C>G

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