SNP Links for Nucleotide (Select 223278405) - SNP

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Links from Nucleotide

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Select item 14909175061.

rs1490917506 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 6:169789769 (GRCh38)
6:170189865 (GRCh37)
Canonical SPDI:: NC_000006.12:169789768:G:C
Gene:: LINC00574 (Varview), LINC00242 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000086/12 (GnomAD)
HGVS:: NC_000006.12:g.169789769G>C, NC_000006.11:g.170189865G>C, NT_187552.1:g.64971G>C, NR_026781.1:n.1439C>G, NM_207502.1:c.*275C>G

Select item 14904311512.

rs1490431151 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 6:169790795 (GRCh38)
6:170190891 (GRCh37)
Canonical SPDI:: NC_000006.12:169790794:C:T
Gene:: LINC00574 (Varview), LINC00242 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
T=0.000014/2 (GnomAD)
C=0.5/1 (SGDP_PRJ)
HGVS:: NC_000006.12:g.169790795C>T, NC_000006.11:g.170190891C>T, NT_187552.1:g.65997C>T, NR_026781.1:n.413G>A, NM_207502.1:c.-134G>A

Select item 14901799123.

rs1490179912 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 6:169789171 (GRCh38)
6:170189267 (GRCh37)
Canonical SPDI:: NC_000006.12:169789170:G:A
Gene:: LINC00574 (Varview), LINC00242 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000023/6 (TOPMED)
A=0.000283/5 (TOMMO)
HGVS:: NC_000006.12:g.169789171G>A, NC_000006.11:g.170189267G>A, NT_187552.1:g.64373G>A, NR_026781.1:n.2037C>T, NM_207502.1:c.*873C>T

Select item 14896401124.

rs1489640112 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 6:169790107 (GRCh38)
6:170190203 (GRCh37)
Canonical SPDI:: NC_000006.12:169790106:C:T
Gene:: LINC00574 (Varview), LINC00242 (Varview)
Functional Consequence:: non_coding_transcript_variant
HGVS:: NC_000006.12:g.169790107C>T, NC_000006.11:g.170190203C>T, NT_187552.1:g.65309C>T, NR_026780.1:n.35C>T, NR_026781.1:n.1101G>A, NM_207502.1:c.555G>A

Select item 14888515415.

rs1488851541 [Homo sapiens]

Variant type:: DELINS
Alleles:: C>-,CC [Show Flanks]
Chromosome:: 6:169791009 (GRCh38)
6:170191105 (GRCh37)
Canonical SPDI:: NC_000006.12:169791008:CCCCCCC:CCCCCC,NC_000006.12:169791008:CCCCCCC:CCCCCCCC
Gene:: LINC00574 (Varview), LINC00242 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: CCCCCCCC=0./0 (ALFA)
-=0.000008/2 (TOPMED)
HGVS:: NC_000006.12:g.169791015del, NC_000006.12:g.169791015dup, NC_000006.11:g.170191111del, NC_000006.11:g.170191111dup, NT_187552.1:g.66217del, NT_187552.1:g.66217dup, NR_026781.1:n.199del, NR_026781.1:n.199dup, NM_207502.1:c.-348del, NM_207502.1:c.-348dup

Select item 14887067446.

rs1488706744 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 6:169790506 (GRCh38)
6:170190602 (GRCh37)
Canonical SPDI:: NC_000006.12:169790505:C:T
Gene:: LINC00574 (Varview), LINC00242 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000021/3 (GnomAD)
HGVS:: NC_000006.12:g.169790506C>T, NC_000006.11:g.170190602C>T, NT_187552.1:g.65708C>T, NR_026781.1:n.702G>A, NM_207502.1:c.156G>A

Select item 14881142227.

rs1488114222 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 6:169790043 (GRCh38)
6:170190139 (GRCh37)
Canonical SPDI:: NC_000006.12:169790042:C:A
Gene:: LINC00574 (Varview), LINC00242 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000006.12:g.169790043C>A, NC_000006.11:g.170190139C>A, NT_187552.1:g.65245C>A, NR_026781.1:n.1165G>T, NM_207502.1:c.*1G>T

Select item 14857942058.

rs1485794205 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 6:169789371 (GRCh38)
6:170189467 (GRCh37)
Canonical SPDI:: NC_000006.12:169789370:T:C
Gene:: LINC00574 (Varview), LINC00242 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.169789371T>C, NC_000006.11:g.170189467T>C, NT_187552.1:g.64573T>C, NR_026781.1:n.1837A>G, NM_207502.1:c.*673A>G

Select item 14855762179.

rs1485576217 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 6:169790671 (GRCh38)
6:170190767 (GRCh37)
Canonical SPDI:: NC_000006.12:169790670:C:T
Gene:: LINC00574 (Varview), LINC00242 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency
MAF:: T=0.000008/1 (GnomAD_exomes)
HGVS:: NC_000006.12:g.169790671C>T, NC_000006.11:g.170190767C>T, NT_187552.1:g.65873C>T, NR_026781.1:n.537G>A, NM_207502.1:c.-10G>A

Select item 148369692710.

rs1483696927 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 6:169790364 (GRCh38)
6:170190460 (GRCh37)
Canonical SPDI:: NC_000006.12:169790363:C:T
Gene:: LINC00574 (Varview), LINC00242 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.169790364C>T, NC_000006.11:g.170190460C>T, NT_187552.1:g.65566C>T, NR_026780.1:n.292C>T, NR_026781.1:n.844G>A, NM_207502.1:c.298G>A, NM_025002.1:c.-335C>T

Select item 148241795011.

rs1482417950 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 6:169790281 (GRCh38)
6:170190377 (GRCh37)
Canonical SPDI:: NC_000006.12:169790280:G:T
Gene:: LINC00574 (Varview), LINC00242 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000014/2 (GnomAD_exomes)
HGVS:: NC_000006.12:g.169790281G>T, NC_000006.11:g.170190377G>T, NT_187552.1:g.65483G>T, NR_026780.1:n.209G>T, NR_026781.1:n.927C>A, NM_207502.1:c.381C>A

Select item 148230226412.

rs1482302264 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->CCT [Show Flanks]
Chromosome:: 6:169790040 (GRCh38)
6:170190137 (GRCh37)
Canonical SPDI:: NC_000006.12:169790040:CTCCT:CTCCTCCT
Gene:: LINC00574 (Varview), LINC00242 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CTCCTCCT=0.000071/1 (ALFA)
CTC=0.000014/2 (GnomAD)
CTC=0.000014/2 (GnomAD_exomes)
CTC=0.000045/12 (TOPMED)
HGVS:: NC_000006.12:g.169790043_169790045dup, NC_000006.11:g.170190139_170190141dup, NT_187552.1:g.65245_65247dup, NR_026781.1:n.1165_1167dup, NM_207502.1:c.*1_*3dup

Select item 148205439713.

rs1482054397 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 6:169789955 (GRCh38)
6:170190051 (GRCh37)
Canonical SPDI:: NC_000006.12:169789954:C:T
Gene:: LINC00574 (Varview), LINC00242 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000006.12:g.169789955C>T, NC_000006.11:g.170190051C>T, NT_187552.1:g.65157C>T, NR_026781.1:n.1253G>A, NM_207502.1:c.*89G>A

Select item 148203163114.

rs1482031631 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 6:169790915 (GRCh38)
6:170191011 (GRCh37)
Canonical SPDI:: NC_000006.12:169790914:C:T
Gene:: LINC00574 (Varview), LINC00242 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000014/2 (GnomAD)
T=0.000015/4 (TOPMED)
HGVS:: NC_000006.12:g.169790915C>T, NC_000006.11:g.170191011C>T, NT_187552.1:g.66117C>T, NR_026781.1:n.293G>A, NM_207502.1:c.-254G>A

Select item 148164383215.

rs1481643832 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 6:169789631 (GRCh38)
6:170189727 (GRCh37)
Canonical SPDI:: NC_000006.12:169789630:A:G
Gene:: LINC00574 (Varview), LINC00242 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
G=0.000035/1 (TOMMO)
G=0.002053/6 (KOREAN)
HGVS:: NC_000006.12:g.169789631A>G, NC_000006.11:g.170189727A>G, NT_187552.1:g.64833A>G, NR_026781.1:n.1577T>C, NM_207502.1:c.*413T>C

Select item 148151036416.

rs1481510364 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 6:169789618 (GRCh38)
6:170189714 (GRCh37)
Canonical SPDI:: NC_000006.12:169789617:C:A
Gene:: LINC00574 (Varview), LINC00242 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000224/1 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000223/1 (Estonian)
HGVS:: NC_000006.12:g.169789618C>A, NC_000006.11:g.170189714C>A, NT_187552.1:g.64820C>A, NR_026781.1:n.1590G>T, NM_207502.1:c.*426G>T

Select item 148014570317.

rs1480145703 [Homo sapiens]

Variant type:: DELINS
Alleles:: AC>- [Show Flanks]
Chromosome:: 6:169788952 (GRCh38)
6:170189048 (GRCh37)
Canonical SPDI:: NC_000006.12:169788949:ACAC:AC
Gene:: LINC00574 (Varview), LINC00242 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: ACAC=0./0 (ALFA)
-=0.000008/2 (TOPMED)
-=0.000014/2 (GnomAD)
HGVS:: NC_000006.12:g.169788950AC[1], NC_000006.11:g.170189046AC[1], NT_187552.1:g.64152AC[1], NR_026781.1:n.2255GT[1], NM_207502.1:c.*1091GT[1]

Select item 147967716618.

rs1479677166 [Homo sapiens]

Variant type:: DELINS
Alleles:: GA>- [Show Flanks]
Chromosome:: 6:169788859 (GRCh38)
6:170188955 (GRCh37)
Canonical SPDI:: NC_000006.12:169788855:AGAGA:AGA
Gene:: LINC00574 (Varview), LINC00242 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AGA=0./0 (ALFA)
-=0.000008/2 (TOPMED)
HGVS:: NC_000006.12:g.169788857GA[1], NC_000006.11:g.170188953GA[1], NT_187552.1:g.64059GA[1], NR_026781.1:n.2349CT[1], NM_207502.1:c.*1185CT[1]

Select item 147831579519.

rs1478315795 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 6:169790354 (GRCh38)
6:170190450 (GRCh37)
Canonical SPDI:: NC_000006.12:169790353:G:A
Gene:: LINC00574 (Varview), LINC00242 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0.000111/1 (ALFA)
A=0.000007/1 (GnomAD_exomes)
HGVS:: NC_000006.12:g.169790354G>A, NC_000006.11:g.170190450G>A, NT_187552.1:g.65556G>A, NR_026780.1:n.282G>A, NR_026781.1:n.854C>T, NM_207502.1:c.308C>T, NM_025002.1:c.-345G>A

Select item 147735323420.

rs1477353234 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 6:169789702 (GRCh38)
6:170189798 (GRCh37)
Canonical SPDI:: NC_000006.12:169789701:C:T
Gene:: LINC00574 (Varview), LINC00242 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000019/5 (TOPMED)
T=0.000021/3 (GnomAD)
HGVS:: NC_000006.12:g.169789702C>T, NC_000006.11:g.170189798C>T, NT_187552.1:g.64904C>T, NR_026781.1:n.1506G>A, NM_207502.1:c.*342G>A