SNP Links for Nucleotide (Select 221307589) - SNP

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Links from Nucleotide

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Select item 14908676261.

rs1490867626 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 16:86555527 (GRCh38)
16:86589133 (GRCh37)
Canonical SPDI:: NC_000016.10:86555526:C:A,NC_000016.10:86555526:C:T
Gene:: MTHFSD (Varview), FLJ30679 (Varview)
Functional Consequence:: 2KB_upstream_variant,non_coding_transcript_variant,upstream_transcript_variant
HGVS:: NC_000016.10:g.86555527C>A, NC_000016.10:g.86555527C>T, NC_000016.9:g.86589133C>A, NC_000016.9:g.86589133C>T, NR_026674.1:n.208C>A, NR_026674.1:n.208C>T, NM_153017.1:c.182C>A, NM_153017.1:c.182C>T

Select item 14907441992.

rs1490744199 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 16:86555383 (GRCh38)
16:86588989 (GRCh37)
Canonical SPDI:: NC_000016.10:86555382:A:G
Gene:: MTHFSD (Varview), FLJ30679 (Varview)
Functional Consequence:: 2KB_upstream_variant,non_coding_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000448/2 (ALFA)
G=0.000014/2 (GnomAD)
G=0.00067/3 (Estonian)
HGVS:: NC_000016.10:g.86555383A>G, NC_000016.9:g.86588989A>G, NR_026674.1:n.64A>G, NM_153017.1:c.38A>G

Select item 14881280543.

rs1488128054 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 16:86556523 (GRCh38)
16:86590129 (GRCh37)
Canonical SPDI:: NC_000016.10:86556522:C:T
Gene:: MTHFSD (Varview), FLJ30679 (Varview)
Functional Consequence:: 2KB_upstream_variant,non_coding_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000016.10:g.86556523C>T, NC_000016.9:g.86590129C>T, NR_026674.1:n.1204C>T, NM_153017.1:c.*785C>T

Select item 14862013944.

rs1486201394 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 16:86555596 (GRCh38)
16:86589202 (GRCh37)
Canonical SPDI:: NC_000016.10:86555595:A:C
Gene:: MTHFSD (Varview), FLJ30679 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency
MAF:: C=0.000008/1 (GnomAD_exomes)
HGVS:: NC_000016.10:g.86555596A>C, NC_000016.9:g.86589202A>C, NR_026674.1:n.277A>C, NM_153017.1:c.251A>C

Select item 14859805105.

rs1485980510 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 16:86556364 (GRCh38)
16:86589970 (GRCh37)
Canonical SPDI:: NC_000016.10:86556363:G:A
Gene:: MTHFSD (Varview), FLJ30679 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000016.10:g.86556364G>A, NC_000016.9:g.86589970G>A, NR_026674.1:n.1045G>A, NM_153017.1:c.*626G>A

Select item 14818755776.

rs1481875577 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 16:86555829 (GRCh38)
16:86589435 (GRCh37)
Canonical SPDI:: NC_000016.10:86555828:G:C
Gene:: MTHFSD (Varview), FLJ30679 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000016.10:g.86555829G>C, NC_000016.9:g.86589435G>C, NR_026674.1:n.510G>C, NM_153017.1:c.*91G>C

Select item 14816149837.

rs1481614983 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 16:86555749 (GRCh38)
16:86589355 (GRCh37)
Canonical SPDI:: NC_000016.10:86555748:C:T
Gene:: MTHFSD (Varview), FLJ30679 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency
MAF:: T=0.000008/1 (GnomAD_exomes)
HGVS:: NC_000016.10:g.86555749C>T, NC_000016.9:g.86589355C>T, NR_026674.1:n.430C>T, NM_153017.1:c.*11C>T

Select item 14804388928.

rs1480438892 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 16:86555755 (GRCh38)
16:86589361 (GRCh37)
Canonical SPDI:: NC_000016.10:86555754:G:A,NC_000016.10:86555754:G:C
Gene:: MTHFSD (Varview), FLJ30679 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000016.10:g.86555755G>A, NC_000016.10:g.86555755G>C, NC_000016.9:g.86589361G>A, NC_000016.9:g.86589361G>C, NR_026674.1:n.436G>A, NR_026674.1:n.436G>C, NM_153017.1:c.*17G>A, NM_153017.1:c.*17G>C

Select item 14796047109.

rs1479604710 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 16:86556458 (GRCh38)
16:86590064 (GRCh37)
Canonical SPDI:: NC_000016.10:86556457:A:C
Gene:: MTHFSD (Varview), FLJ30679 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000016.10:g.86556458A>C, NC_000016.9:g.86590064A>C, NR_026674.1:n.1139A>C, NM_153017.1:c.*720A>C

Select item 147593504610.

rs1475935046 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 16:86555820 (GRCh38)
16:86589426 (GRCh37)
Canonical SPDI:: NC_000016.10:86555819:C:G
Gene:: MTHFSD (Varview), FLJ30679 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000016.10:g.86555820C>G, NC_000016.9:g.86589426C>G, NR_026674.1:n.501C>G, NM_153017.1:c.*82C>G

Select item 147501367711.

rs1475013677 [Homo sapiens]

Variant type:: DEL
Alleles:: G>- [Show Flanks]
Chromosome:: 16:86556777 (GRCh38)
16:86590383 (GRCh37)
Canonical SPDI:: NC_000016.10:86556776:G:
Gene:: MTHFSD (Varview), FLJ30679 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000016.10:g.86556777del, NC_000016.9:g.86590383del, NR_026674.1:n.1458del, NM_153017.1:c.*1039del

Select item 147486420712.

rs1474864207 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 16:86557013 (GRCh38)
16:86590619 (GRCh37)
Canonical SPDI:: NC_000016.10:86557012:C:A
Gene:: MTHFSD (Varview), FLJ30679 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: A=0.000071/1 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000016.10:g.86557013C>A, NC_000016.9:g.86590619C>A, NR_026674.1:n.1694C>A, NM_153017.1:c.*1275C>A

Select item 147254038113.

rs1472540381 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 16:86556118 (GRCh38)
16:86589724 (GRCh37)
Canonical SPDI:: NC_000016.10:86556117:A:G
Gene:: MTHFSD (Varview), FLJ30679 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000019/5 (TOPMED)
G=0.000071/1 (TOMMO)
HGVS:: NC_000016.10:g.86556118A>G, NC_000016.9:g.86589724A>G, NR_026674.1:n.799A>G, NM_153017.1:c.*380A>G

Select item 147143148414.

rs1471431484 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 16:86556899 (GRCh38)
16:86590505 (GRCh37)
Canonical SPDI:: NC_000016.10:86556898:T:C
Gene:: MTHFSD (Varview), FLJ30679 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000016.10:g.86556899T>C, NC_000016.9:g.86590505T>C, NR_026674.1:n.1580T>C, NM_153017.1:c.*1161T>C

Select item 147140052415.

rs1471400524 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G [Show Flanks]
Chromosome:: 16:86556222 (GRCh38)
16:86589828 (GRCh37)
Canonical SPDI:: NC_000016.10:86556221:C:A,NC_000016.10:86556221:C:G
Gene:: MTHFSD (Varview), FLJ30679 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000011/3 (TOPMED)
G=0.000014/2 (GnomAD)
HGVS:: NC_000016.10:g.86556222C>A, NC_000016.10:g.86556222C>G, NC_000016.9:g.86589828C>A, NC_000016.9:g.86589828C>G, NR_026674.1:n.903C>A, NR_026674.1:n.903C>G, NM_153017.1:c.*484C>A, NM_153017.1:c.*484C>G

Select item 147005011016.

rs1470050110 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 16:86555700 (GRCh38)
16:86589306 (GRCh37)
Canonical SPDI:: NC_000016.10:86555699:G:T
Gene:: MTHFSD (Varview), FLJ30679 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency
MAF:: T=0.000008/1 (GnomAD_exomes)
HGVS:: NC_000016.10:g.86555700G>T, NC_000016.9:g.86589306G>T, NR_026674.1:n.381G>T, NM_153017.1:c.355G>T

Select item 146983179017.

rs1469831790 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 16:86556601 (GRCh38)
16:86590207 (GRCh37)
Canonical SPDI:: NC_000016.10:86556600:T:G
Gene:: MTHFSD (Varview), FLJ30679 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
G=0.000014/2 (GnomAD)
HGVS:: NC_000016.10:g.86556601T>G, NC_000016.9:g.86590207T>G, NR_026674.1:n.1282T>G, NM_153017.1:c.*863T>G

Select item 146894702118.

rs1468947021 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 16:86555766 (GRCh38)
16:86589372 (GRCh37)
Canonical SPDI:: NC_000016.10:86555765:C:T
Gene:: MTHFSD (Varview), FLJ30679 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000008/1 (GnomAD_exomes)
T=0.000008/2 (TOPMED)
T=0.000106/2 (TOMMO)
HGVS:: NC_000016.10:g.86555766C>T, NC_000016.9:g.86589372C>T, NR_026674.1:n.447C>T, NM_153017.1:c.*28C>T

Select item 146887979719.

rs1468879797 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 16:86555889 (GRCh38)
16:86589495 (GRCh37)
Canonical SPDI:: NC_000016.10:86555888:C:T
Gene:: MTHFSD (Varview), FLJ30679 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000011/3 (TOPMED)
HGVS:: NC_000016.10:g.86555889C>T, NC_000016.9:g.86589495C>T, NR_026674.1:n.570C>T, NM_153017.1:c.*151C>T

Select item 146754212320.

rs1467542123 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 16:86556232 (GRCh38)
16:86589838 (GRCh37)
Canonical SPDI:: NC_000016.10:86556231:C:A
Gene:: MTHFSD (Varview), FLJ30679 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000019/5 (TOPMED)
A=0.000035/1 (TOMMO)
HGVS:: NC_000016.10:g.86556232C>A, NC_000016.9:g.86589838C>A, NR_026674.1:n.913C>A, NM_153017.1:c.*494C>A