SNP Links for Nucleotide (Select 213385281) - SNP

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Select item 14915834871.

rs1491583487 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->CT [Show Flanks]
Chromosome:: 17:42753914 (GRCh38)
17:40905933 (GRCh37)
Canonical SPDI:: NC_000017.11:42753914:T:TCT
Gene:: RAMP2-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TCT=0./0 (ALFA)
TC=0.000008/1 (GnomAD)
TC=0.000008/2 (TOPMED)
HGVS:: NC_000017.11:g.42753915_42753916insCT, NC_000017.10:g.40905933_40905934insCT, NG_028969.1:g.92_93insGA, NR_024461.1:n.3271_3272insGA, NR_024462.1:n.1695_1696insGA

Select item 14914414692.

rs1491441469 has merged into rs779187369 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTTTTTTT>-,T,TT,TTTT,TTTTT,TTTTTT,TTTTTTT,TTTTTTTTT,TTTTTTTTTT,TTTTTTTTTTT,TTTTTTTTTTTT,TTTTTTTTTTTTT,TTTTTTTTTTTTTT,TTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTT [Show Flanks]
Chromosome:: 17:42753923 (GRCh38)
17:40905941 (GRCh37)
Canonical SPDI:: NC_000017.11:42753913:TTTTTTTTTTTTTTTTT:TTTTTTTTT,NC_000017.11:42753913:TTTTTTTTTTTTTTTTT:TTTTTTTTTT,NC_000017.11:42753913:TTTTTTTTTTTTTTTTT:TTTTTTTTTTT,NC_000017.11:42753913:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTT,NC_000017.11:42753913:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000017.11:42753913:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000017.11:42753913:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000017.11:42753913:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT,NC_000017.11:42753913:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT,NC_000017.11:42753913:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTT,NC_000017.11:42753913:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT,NC_000017.11:42753913:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTT,NC_000017.11:42753913:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTT,NC_000017.11:42753913:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTT,NC_000017.11:42753913:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTT
Gene:: RAMP2-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTTT=0./0 (ALFA)
-=0.000106/28 (TOPMED)
T=0.425/17 (GENOME_DK)
HGVS:: NC_000017.11:g.42753923_42753930del, NC_000017.11:g.42753924_42753930del, NC_000017.11:g.42753925_42753930del, NC_000017.11:g.42753927_42753930del, NC_000017.11:g.42753928_42753930del, NC_000017.11:g.42753929_42753930del, NC_000017.11:g.42753930del, NC_000017.11:g.42753930dup, NC_000017.11:g.42753929_42753930dup, NC_000017.11:g.42753928_42753930dup, NC_000017.11:g.42753927_42753930dup, NC_000017.11:g.42753926_42753930dup, NC_000017.11:g.42753925_42753930dup, NC_000017.11:g.42753923_42753930dup, NC_000017.11:g.42753922_42753930dup, NC_000017.10:g.40905941_40905948del, NC_000017.10:g.40905942_40905948del, NC_000017.10:g.40905943_40905948del, NC_000017.10:g.40905945_40905948del, NC_000017.10:g.40905946_40905948del, NC_000017.10:g.40905947_40905948del, NC_000017.10:g.40905948del, NC_000017.10:g.40905948dup, NC_000017.10:g.40905947_40905948dup, NC_000017.10:g.40905946_40905948dup, NC_000017.10:g.40905945_40905948dup, NC_000017.10:g.40905944_40905948dup, NC_000017.10:g.40905943_40905948dup, NC_000017.10:g.40905941_40905948dup, NC_000017.10:g.40905940_40905948dup, NG_028969.1:g.86_93del, NG_028969.1:g.87_93del, NG_028969.1:g.88_93del, NG_028969.1:g.90_93del, NG_028969.1:g.91_93del, NG_028969.1:g.92_93del, NG_028969.1:g.93del, NG_028969.1:g.93dup, NG_028969.1:g.92_93dup, NG_028969.1:g.91_93dup, NG_028969.1:g.90_93dup, NG_028969.1:g.89_93dup, NG_028969.1:g.88_93dup, NG_028969.1:g.86_93dup, NG_028969.1:g.85_93dup, NR_024461.1:n.3265_3272del, NR_024461.1:n.3266_3272del, NR_024461.1:n.3267_3272del, NR_024461.1:n.3269_3272del, NR_024461.1:n.3270_3272del, NR_024461.1:n.3271_3272del, NR_024461.1:n.3272del, NR_024461.1:n.3272dup, NR_024461.1:n.3271_3272dup, NR_024461.1:n.3270_3272dup, NR_024461.1:n.3269_3272dup, NR_024461.1:n.3268_3272dup, NR_024461.1:n.3267_3272dup, NR_024461.1:n.3265_3272dup, NR_024461.1:n.3264_3272dup, NR_024462.1:n.1689_1696del, NR_024462.1:n.1690_1696del, NR_024462.1:n.1691_1696del, NR_024462.1:n.1693_1696del, NR_024462.1:n.1694_1696del, NR_024462.1:n.1695_1696del, NR_024462.1:n.1696del, NR_024462.1:n.1696dup, NR_024462.1:n.1695_1696dup, NR_024462.1:n.1694_1696dup, NR_024462.1:n.1693_1696dup, NR_024462.1:n.1692_1696dup, NR_024462.1:n.1691_1696dup, NR_024462.1:n.1689_1696dup, NR_024462.1:n.1688_1696dup

Select item 14900293413.

rs1490029341 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 17:42759859 (GRCh38)
17:40911877 (GRCh37)
Canonical SPDI:: NC_000017.11:42759858:G:A
Gene:: RAMP2 (Varview), RAMP2-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,non_coding_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000015/4 (TOPMED)
A=0.000043/6 (GnomAD_exomes)
HGVS:: NC_000017.11:g.42759859G>A, NC_000017.10:g.40911877G>A, NR_024461.1:n.686C>T, NR_024462.1:n.565C>T

Select item 14869962754.

rs1486996275 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 17:42761236 (GRCh38)
17:40913254 (GRCh37)
Canonical SPDI:: NC_000017.11:42761235:G:A
Gene:: RAMP2 (Varview), RAMP2-AS1 (Varview)
Functional Consequence:: 5_prime_UTR_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000017.11:g.42761236G>A, NC_000017.10:g.40913254G>A, NM_005854.3:c.-26G>A, NM_005854.2:c.-26G>A, NR_024461.1:n.22C>T, NR_024462.1:n.22C>T

Select item 14867552335.

rs1486755233 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 17:42754255 (GRCh38)
17:40906273 (GRCh37)
Canonical SPDI:: NC_000017.11:42754254:G:T
Gene:: RAMP2-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000017.11:g.42754255G>T, NC_000017.10:g.40906273G>T, NR_024461.1:n.2931C>A

Select item 14862115316.

rs1486211531 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 17:42754780 (GRCh38)
17:40906798 (GRCh37)
Canonical SPDI:: NC_000017.11:42754779:C:T
Gene:: RAMP2-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000017.11:g.42754780C>T, NC_000017.10:g.40906798C>T, NR_024461.1:n.2406G>A, NR_024462.1:n.1119G>A

Select item 14854927827.

rs1485492782 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 17:42754928 (GRCh38)
17:40906946 (GRCh37)
Canonical SPDI:: NC_000017.11:42754927:T:C
Gene:: RAMP2-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant
HGVS:: NC_000017.11:g.42754928T>C, NC_000017.10:g.40906946T>C, NR_024461.1:n.2258A>G, NR_024462.1:n.971A>G

Select item 14852640668.

rs1485264066 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 17:42756287 (GRCh38)
17:40908305 (GRCh37)
Canonical SPDI:: NC_000017.11:42756286:G:C
Gene:: RAMP2-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000017.11:g.42756287G>C, NC_000017.10:g.40908305G>C, NR_024461.1:n.899C>G

Select item 14849915479.

rs1484991547 [Homo sapiens]

Variant type:: DEL
Alleles:: G>- [Show Flanks]
Chromosome:: 17:42753931 (GRCh38)
17:40905949 (GRCh37)
Canonical SPDI:: NC_000017.11:42753930:G:
Gene:: RAMP2-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.000073/10 (GnomAD)
HGVS:: NC_000017.11:g.42753931del, NC_000017.10:g.40905949del, NG_028969.1:g.76del, NR_024461.1:n.3255del, NR_024462.1:n.1679del

Select item 148417829710.

rs1484178297 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 17:42760492 (GRCh38)
17:40912510 (GRCh37)
Canonical SPDI:: NC_000017.11:42760491:G:A,NC_000017.11:42760491:G:C
Gene:: RAMP2 (Varview), RAMP2-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,non_coding_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD_exomes)
HGVS:: NC_000017.11:g.42760492G>A, NC_000017.11:g.42760492G>C, NC_000017.10:g.40912510G>A, NC_000017.10:g.40912510G>C, NR_024461.1:n.598C>T, NR_024461.1:n.598C>G, NR_024462.1:n.477C>T, NR_024462.1:n.477C>G

Select item 148232405311.

rs1482324053 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 17:42756116 (GRCh38)
17:40908134 (GRCh37)
Canonical SPDI:: NC_000017.11:42756115:A:G
Gene:: RAMP2-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000008/2 (TOPMED)
HGVS:: NC_000017.11:g.42756116A>G, NC_000017.10:g.40908134A>G, NR_024461.1:n.1070T>C

Select item 148019082012.

rs1480190820 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 17:42756279 (GRCh38)
17:40908297 (GRCh37)
Canonical SPDI:: NC_000017.11:42756278:A:G
Gene:: RAMP2-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000019/5 (TOPMED)
HGVS:: NC_000017.11:g.42756279A>G, NC_000017.10:g.40908297A>G, NR_024461.1:n.907T>C

Select item 148006013913.

rs1480060139 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 17:42761240 (GRCh38)
17:40913258 (GRCh37)
Canonical SPDI:: NC_000017.11:42761239:C:G,NC_000017.11:42761239:C:T
Gene:: RAMP2 (Varview), RAMP2-AS1 (Varview)
Functional Consequence:: 5_prime_UTR_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
G=0.000014/1 (GnomAD_exomes)
HGVS:: NC_000017.11:g.42761240C>G, NC_000017.11:g.42761240C>T, NC_000017.10:g.40913258C>G, NC_000017.10:g.40913258C>T, NM_005854.3:c.-22C>G, NM_005854.3:c.-22C>T, NM_005854.2:c.-22C>G, NM_005854.2:c.-22C>T, NR_024461.1:n.18G>C, NR_024461.1:n.18G>A, NR_024462.1:n.18G>C, NR_024462.1:n.18G>A

Select item 147982434514.

rs1479824345 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 17:42759804 (GRCh38)
17:40911822 (GRCh37)
Canonical SPDI:: NC_000017.11:42759803:G:A
Gene:: RAMP2 (Varview), RAMP2-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,non_coding_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000094/1 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000007/1 (GnomAD_exomes)
A=0.000008/2 (TOPMED)
HGVS:: NC_000017.11:g.42759804G>A, NC_000017.10:g.40911822G>A, NR_024461.1:n.741C>T, NR_024462.1:n.620C>T

Select item 147920420715.

rs1479204207 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 17:42755864 (GRCh38)
17:40907882 (GRCh37)
Canonical SPDI:: NC_000017.11:42755863:C:T
Gene:: RAMP2-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000017.11:g.42755864C>T, NC_000017.10:g.40907882C>T, NR_024461.1:n.1322G>A

Select item 147780236816.

rs1477802368 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,G [Show Flanks]
Chromosome:: 17:42756098 (GRCh38)
17:40908116 (GRCh37)
Canonical SPDI:: NC_000017.11:42756097:A:C,NC_000017.11:42756097:A:G
Gene:: RAMP2-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
C=0.002183/4 (Korea1K)
HGVS:: NC_000017.11:g.42756098A>C, NC_000017.11:g.42756098A>G, NC_000017.10:g.40908116A>C, NC_000017.10:g.40908116A>G, NR_024461.1:n.1088T>G, NR_024461.1:n.1088T>C

Select item 147776476217.

rs1477764762 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 17:42754336 (GRCh38)
17:40906354 (GRCh37)
Canonical SPDI:: NC_000017.11:42754335:G:C
Gene:: RAMP2-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000017.11:g.42754336G>C, NC_000017.10:g.40906354G>C, NR_024461.1:n.2850C>G

Select item 147772792818.

rs1477727928 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 17:42755073 (GRCh38)
17:40907091 (GRCh37)
Canonical SPDI:: NC_000017.11:42755072:G:A
Gene:: RAMP2-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000017.11:g.42755073G>A, NC_000017.10:g.40907091G>A, NR_024461.1:n.2113C>T, NR_024462.1:n.826C>T

Select item 147595478619.

rs1475954786 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 17:42755669 (GRCh38)
17:40907687 (GRCh37)
Canonical SPDI:: NC_000017.11:42755668:G:A
Gene:: RAMP2-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000017.11:g.42755669G>A, NC_000017.10:g.40907687G>A, NR_024461.1:n.1517C>T

Select item 147590765120.

rs1475907651 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 17:42754922 (GRCh38)
17:40906940 (GRCh37)
Canonical SPDI:: NC_000017.11:42754921:T:C
Gene:: RAMP2-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000021/3 (GnomAD)
C=0.000023/6 (TOPMED)
HGVS:: NC_000017.11:g.42754922T>C, NC_000017.10:g.40906940T>C, NR_024461.1:n.2264A>G, NR_024462.1:n.977A>G

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