SNP Links for Nucleotide (Select 197313738) - SNP

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Links from Nucleotide

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Select item 14888809441.

rs1488880944 has merged into rs1222360502 [Homo sapiens]

Variant type:: DELINS
Alleles:: TCTC>-,TC [Show Flanks]
Chromosome:: 7:27185885 (GRCh38)
7:27225504 (GRCh37)
Canonical SPDI:: NC_000007.14:27185881:CTCTCTC:CTC,NC_000007.14:27185881:CTCTCTC:CTCTC
Gene:: HOXA11 (Varview), HOXA11-AS (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CTCTC=0./0 (ALFA)
-=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.27185883TC[1], NC_000007.14:g.27185883TC[2], NC_000007.13:g.27225502TC[1], NC_000007.13:g.27225502TC[2], NG_012079.1:g.4330AG[1], NG_012079.1:g.4330AG[2], NR_002795.2:n.476TC[1], NR_002795.2:n.476TC[2]

Select item 14879704112.

rs1487970411 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 7:27188916 (GRCh38)
7:27228535 (GRCh37)
Canonical SPDI:: NC_000007.14:27188915:C:A,NC_000007.14:27188915:C:T
Gene:: HOXA11-AS (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.27188916C>A, NC_000007.14:g.27188916C>T, NC_000007.13:g.27228535C>A, NC_000007.13:g.27228535C>T, NG_012079.1:g.1301G>T, NG_012079.1:g.1301G>A, NR_002795.2:n.1172C>A, NR_002795.2:n.1172C>T

Select item 14860881123.

rs1486088112 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 7:27186075 (GRCh38)
7:27225694 (GRCh37)
Canonical SPDI:: NC_000007.14:27186074:C:A
Gene:: HOXA11 (Varview), HOXA11-AS (Varview)
Functional Consequence:: non_coding_transcript_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000021/3 (GnomAD)
HGVS:: NC_000007.14:g.27186075C>A, NC_000007.13:g.27225694C>A, NG_012079.1:g.4142G>T, NR_002795.2:n.668C>A

Select item 14848885324.

rs1484888532 [Homo sapiens]

Variant type:: SNV:
Alleles:: ->AAGGGCGATGAGTGTGGGGAGGAATGGGGTGGGTTTTGTATGT
Chromosome:: no mapping
Canonical SPDI:

Select item 14837337335.

rs1483733733 [Homo sapiens]

Variant type:: DELINS
Alleles:: GT>- [Show Flanks]
Chromosome:: 7:27188801 (GRCh38)
7:27228420 (GRCh37)
Canonical SPDI:: NC_000007.14:27188799:TGT:T
Gene:: HOXA11-AS (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
-=0.000007/1 (GnomAD)
-=0.000008/2 (TOPMED)
HGVS:: NC_000007.14:g.27188801_27188802del, NC_000007.13:g.27228420_27228421del, NG_012079.1:g.1416_1417del, NR_002795.2:n.1057_1058del

Select item 14822048836.

rs1482204883 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 7:27188706 (GRCh38)
7:27228325 (GRCh37)
Canonical SPDI:: NC_000007.14:27188705:G:A
Gene:: HOXA11-AS (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000007.14:g.27188706G>A, NC_000007.13:g.27228325G>A, NG_012079.1:g.1511C>T, NR_002795.2:n.962G>A

Select item 14821571647.

rs1482157164 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: 7:27189168 (GRCh38)
7:27228787 (GRCh37)
Canonical SPDI:: NC_000007.14:27189167:T:C,NC_000007.14:27189167:T:G
Gene:: HOXA11-AS (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.27189168T>C, NC_000007.14:g.27189168T>G, NC_000007.13:g.27228787T>C, NC_000007.13:g.27228787T>G, NG_012079.1:g.1049A>G, NG_012079.1:g.1049A>C, NR_002795.2:n.1424T>C, NR_002795.2:n.1424T>G

Select item 14818253808.

rs1481825380 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,G [Show Flanks]
Chromosome:: 7:27188714 (GRCh38)
7:27228333 (GRCh37)
Canonical SPDI:: NC_000007.14:27188713:A:C,NC_000007.14:27188713:A:G
Gene:: HOXA11-AS (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000045/12 (TOPMED)
C=0.000212/4 (TOMMO)
C=0.000342/1 (KOREAN)
HGVS:: NC_000007.14:g.27188714A>C, NC_000007.14:g.27188714A>G, NC_000007.13:g.27228333A>C, NC_000007.13:g.27228333A>G, NG_012079.1:g.1503T>G, NG_012079.1:g.1503T>C, NR_002795.2:n.970A>C, NR_002795.2:n.970A>G

Select item 14801292699.

rs1480129269 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 7:27185794 (GRCh38)
7:27225413 (GRCh37)
Canonical SPDI:: NC_000007.14:27185793:C:T
Gene:: HOXA11 (Varview), HOXA11-AS (Varview)
Functional Consequence:: non_coding_transcript_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000011/3 (TOPMED)
T=0.000029/4 (GnomAD)
HGVS:: NC_000007.14:g.27185794C>T, NC_000007.13:g.27225413C>T, NG_012079.1:g.4423G>A, NR_002795.2:n.387C>T

Select item 147671724110.

rs1476717241 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 7:27185701 (GRCh38)
7:27225320 (GRCh37)
Canonical SPDI:: NC_000007.14:27185700:G:A
Gene:: HOXA11 (Varview), HOXA11-AS (Varview)
Functional Consequence:: non_coding_transcript_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.27185701G>A, NC_000007.13:g.27225320G>A, NG_012079.1:g.4516C>T, NR_002795.2:n.294G>A

Select item 147513531811.

rs1475135318 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 7:27189056 (GRCh38)
7:27228675 (GRCh37)
Canonical SPDI:: NC_000007.14:27189055:G:A
Gene:: HOXA11-AS (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000043/6 (GnomAD)
HGVS:: NC_000007.14:g.27189056G>A, NC_000007.13:g.27228675G>A, NG_012079.1:g.1161C>T, NR_002795.2:n.1312G>A

Select item 147376182912.

rs1473761829 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 7:27185711 (GRCh38)
7:27225330 (GRCh37)
Canonical SPDI:: NC_000007.14:27185710:C:G,NC_000007.14:27185710:C:T
Gene:: HOXA11 (Varview), HOXA11-AS (Varview)
Functional Consequence:: non_coding_transcript_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000007.14:g.27185711C>G, NC_000007.14:g.27185711C>T, NC_000007.13:g.27225330C>G, NC_000007.13:g.27225330C>T, NG_012079.1:g.4506G>C, NG_012079.1:g.4506G>A, NR_002795.2:n.304C>G, NR_002795.2:n.304C>T

Select item 146872354313.

rs1468723543 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 7:27189206 (GRCh38)
7:27228825 (GRCh37)
Canonical SPDI:: NC_000007.14:27189205:C:G,NC_000007.14:27189205:C:T
Gene:: HOXA11-AS (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000007.14:g.27189206C>G, NC_000007.14:g.27189206C>T, NC_000007.13:g.27228825C>G, NC_000007.13:g.27228825C>T, NG_012079.1:g.1011G>C, NG_012079.1:g.1011G>A, NR_002795.2:n.1462C>G, NR_002795.2:n.1462C>T

Select item 146798375414.

rs1467983754 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 7:27188672 (GRCh38)
7:27228291 (GRCh37)
Canonical SPDI:: NC_000007.14:27188671:G:A
Gene:: HOXA11-AS (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000142/2 (ALFA)
A=0.000019/5 (TOPMED)
A=0.000021/3 (GnomAD)
HGVS:: NC_000007.14:g.27188672G>A, NC_000007.13:g.27228291G>A, NG_012079.1:g.1545C>T, NR_002795.2:n.928G>A

Select item 146657809415.

rs1466578094 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 7:27189004 (GRCh38)
7:27228623 (GRCh37)
Canonical SPDI:: NC_000007.14:27189003:G:A
Gene:: HOXA11-AS (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000007.14:g.27189004G>A, NC_000007.13:g.27228623G>A, NG_012079.1:g.1213C>T, NR_002795.2:n.1260G>A

Select item 146647032716.

rs1466470327 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 7:27186008 (GRCh38)
7:27225627 (GRCh37)
Canonical SPDI:: NC_000007.14:27186007:C:A,NC_000007.14:27186007:C:T
Gene:: HOXA11 (Varview), HOXA11-AS (Varview)
Functional Consequence:: non_coding_transcript_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000008/2 (TOPMED)
A=0.000142/2 (TOMMO)
A=0.000342/1 (KOREAN)
A=0.000546/1 (Korea1K)
HGVS:: NC_000007.14:g.27186008C>A, NC_000007.14:g.27186008C>T, NC_000007.13:g.27225627C>A, NC_000007.13:g.27225627C>T, NG_012079.1:g.4209G>T, NG_012079.1:g.4209G>A, NR_002795.2:n.601C>A, NR_002795.2:n.601C>T

Select item 146431694217.

rs1464316942 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: 7:27188620 (GRCh38)
7:27228239 (GRCh37)
Canonical SPDI:: NC_000007.14:27188619:T:C,NC_000007.14:27188619:T:G
Gene:: HOXA11-AS (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
HGVS:: NC_000007.14:g.27188620T>C, NC_000007.14:g.27188620T>G, NC_000007.13:g.27228239T>C, NC_000007.13:g.27228239T>G, NG_012079.1:g.1597A>G, NG_012079.1:g.1597A>C, NR_002795.2:n.876T>C, NR_002795.2:n.876T>G

Select item 146431126518.

rs1464311265 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G,T [Show Flanks]
Chromosome:: 7:27185777 (GRCh38)
7:27225396 (GRCh37)
Canonical SPDI:: NC_000007.14:27185776:C:A,NC_000007.14:27185776:C:G,NC_000007.14:27185776:C:T
Gene:: HOXA11 (Varview), HOXA11-AS (Varview)
Functional Consequence:: non_coding_transcript_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.27185777C>A, NC_000007.14:g.27185777C>G, NC_000007.14:g.27185777C>T, NC_000007.13:g.27225396C>A, NC_000007.13:g.27225396C>G, NC_000007.13:g.27225396C>T, NG_012079.1:g.4440G>T, NG_012079.1:g.4440G>C, NG_012079.1:g.4440G>A, NR_002795.2:n.370C>A, NR_002795.2:n.370C>G, NR_002795.2:n.370C>T

Select item 146412487519.

rs1464124875 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 7:27186001 (GRCh38)
7:27225620 (GRCh37)
Canonical SPDI:: NC_000007.14:27186000:G:C
Gene:: HOXA11 (Varview), HOXA11-AS (Varview)
Functional Consequence:: non_coding_transcript_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000008/2 (TOPMED)
HGVS:: NC_000007.14:g.27186001G>C, NC_000007.13:g.27225620G>C, NG_012079.1:g.4216C>G, NR_002795.2:n.594G>C

Select item 146360980120.

rs1463609801 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 7:27185692 (GRCh38)
7:27225311 (GRCh37)
Canonical SPDI:: NC_000007.14:27185691:T:A
Gene:: HOXA11 (Varview), HOXA11-AS (Varview)
Functional Consequence:: non_coding_transcript_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000011/3 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000007.14:g.27185692T>A, NC_000007.13:g.27225311T>A, NG_012079.1:g.4525A>T, NR_002795.2:n.285T>A

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