SNP Links for Nucleotide (Select 157073879) - SNP

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Links from Nucleotide

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Select item 14909429501.

rs1490942950 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G,T [Show Flanks]
Chromosome:: 9:41007523 (GRCh38)
9:69080752 (GRCh37)
Canonical SPDI:: NC_000009.12:41007522:A:G,NC_000009.12:41007522:A:T
Gene:: PGM5P2 (Varview), FRG1HP (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.41007523A>G, NC_000009.12:g.41007523A>T, NC_000009.11:g.69080752A>G, NC_000009.11:g.69080752A>T, NR_002836.2:n.1464T>C, NR_002836.2:n.1464T>A

Select item 14908911132.

rs1490891113 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 9:41007251 (GRCh38)
9:69080480 (GRCh37)
Canonical SPDI:: NC_000009.12:41007250:A:T
Gene:: PGM5P2 (Varview), FRG1HP (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0.000084/1 (ALFA)
T=0.000064/9 (GnomAD)
HGVS:: NC_000009.12:g.41007251A>T, NC_000009.11:g.69080480A>T, NR_002836.2:n.1736T>A

Select item 14906726553.

rs1490672655 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 9:41039654 (GRCh38)
9:69112883 (GRCh37)
Canonical SPDI:: NC_000009.12:41039653:G:A
Gene:: PGM5P2 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000114/16 (GnomAD)
A=0.000142/4 (TOMMO)
HGVS:: NC_000009.12:g.41039654G>A, NC_000009.11:g.69112883G>A, NR_002836.2:n.1177C>T

Select item 14904478624.

rs1490447862 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 9:41007390 (GRCh38)
9:69080619 (GRCh37)
Canonical SPDI:: NC_000009.12:41007389:G:A,NC_000009.12:41007389:G:T
Gene:: PGM5P2 (Varview), FRG1HP (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0.00031/2 (1000Genomes)
HGVS:: NC_000009.12:g.41007390G>A, NC_000009.12:g.41007390G>T, NC_000009.11:g.69080619G>A, NC_000009.11:g.69080619G>T, NR_002836.2:n.1597C>T, NR_002836.2:n.1597C>A

Select item 14901333635.

rs1490133363 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G,T [Show Flanks]
Chromosome:: 9:41031441 (GRCh38)
9:69104670 (GRCh37)
Canonical SPDI:: NC_000009.12:41031440:C:A,NC_000009.12:41031440:C:G,NC_000009.12:41031440:C:T
Gene:: PGM5P2 (Varview), FRG1HP (Varview)
Functional Consequence:: non_coding_transcript_variant,genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
G=0.000004/1 (TOPMED)
T=0.000014/2 (GnomAD)
G=0.000071/2 (TOMMO)
A=0.000312/2 (1000Genomes)
HGVS:: NC_000009.12:g.41031441C>A, NC_000009.12:g.41031441C>G, NC_000009.12:g.41031441C>T, NC_000009.11:g.69104670C>A, NC_000009.11:g.69104670C>G, NC_000009.11:g.69104670C>T, NR_002836.2:n.1292G>T, NR_002836.2:n.1292G>C, NR_002836.2:n.1292G>A

Select item 14899734446.

rs1489973444 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 9:41007294 (GRCh38)
9:69080523 (GRCh37)
Canonical SPDI:: NC_000009.12:41007293:A:G
Gene:: PGM5P2 (Varview), FRG1HP (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000014/2 (GnomAD)
HGVS:: NC_000009.12:g.41007294A>G, NC_000009.11:g.69080523A>G, NR_002836.2:n.1693T>C

Select item 14886212287.

rs1488621228 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 9:41053798 (GRCh38)
9:69127027 (GRCh37)
Canonical SPDI:: NC_000009.12:41053797:G:T
Gene:: PGM5P2 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000023/6 (TOPMED)
HGVS:: NC_000009.12:g.41053798G>T, NC_000009.11:g.69127027G>T, NR_002836.2:n.540C>A

Select item 14883133318.

rs1488313331 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 9:41047594 (GRCh38)
9:69120823 (GRCh37)
Canonical SPDI:: NC_000009.12:41047593:G:A,NC_000009.12:41047593:G:T
Gene:: PGM5P2 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0.00004/1 (TOMMO)
A=0.00055/1 (Korea1K)
HGVS:: NC_000009.12:g.41047594G>A, NC_000009.12:g.41047594G>T, NC_000009.11:g.69120823G>A, NC_000009.11:g.69120823G>T, NR_002836.2:n.697C>T, NR_002836.2:n.697C>A

Select item 14882637169.

rs1488263716 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 9:41040490 (GRCh38)
9:69113719 (GRCh37)
Canonical SPDI:: NC_000009.12:41040489:G:T
Gene:: PGM5P2 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0.000084/1 (ALFA)
T=0./0 (GnomAD)
HGVS:: NC_000009.12:g.41040490G>T, NC_000009.11:g.69113719G>T, NR_002836.2:n.935C>A

Select item 148771301510.

rs1487713015 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 9:41074533 (GRCh38)
9:69147762 (GRCh37)
Canonical SPDI:: NC_000009.12:41074532:C:A,NC_000009.12:41074532:C:T
Gene:: PGM5P2 (Varview), LOC124902161 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000009.12:g.41074533C>A, NC_000009.12:g.41074533C>T, NC_000009.11:g.69147762C>A, NC_000009.11:g.69147762C>T, NR_002836.2:n.93G>T, NR_002836.2:n.93G>A, XR_007061510.1:n.25C>A, XR_007061510.1:n.25C>T

Select item 148710626811.

rs1487106268 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 9:41025788 (GRCh38)
9:69099017 (GRCh37)
Canonical SPDI:: NC_000009.12:41025787:T:C
Gene:: PGM5P2 (Varview), FRG1HP (Varview)
Functional Consequence:: non_coding_transcript_variant,genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000008/2 (TOPMED)
HGVS:: NC_000009.12:g.41025788T>C, NC_000009.11:g.69099017T>C, NR_002836.2:n.1428A>G

Select item 148667938112.

rs1486679381 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 9:41007131 (GRCh38)
9:69080360 (GRCh37)
Canonical SPDI:: NC_000009.12:41007130:G:A
Gene:: PGM5P2 (Varview), FRG1HP (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000506/6 (ALFA)
A=0.000342/48 (GnomAD)
A=0.000468/3 (1000Genomes)
HGVS:: NC_000009.12:g.41007131G>A, NC_000009.11:g.69080360G>A, NR_002836.2:n.1856C>T

Select item 148626309113.

rs1486263091 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 9:41039673 (GRCh38)
9:69112902 (GRCh37)
Canonical SPDI:: NC_000009.12:41039672:A:G
Gene:: PGM5P2 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000029/4 (GnomAD)
HGVS:: NC_000009.12:g.41039673A>G, NC_000009.11:g.69112902A>G, NR_002836.2:n.1158T>C

Select item 148571736214.

rs1485717362 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 9:41074245 (GRCh38)
9:69147474 (GRCh37)
Canonical SPDI:: NC_000009.12:41074244:G:A,NC_000009.12:41074244:G:T
Gene:: PGM5P2 (Varview), LOC124902161 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0.000004/1 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000009.12:g.41074245G>A, NC_000009.12:g.41074245G>T, NC_000009.11:g.69147474G>A, NC_000009.11:g.69147474G>T, NR_002836.2:n.381C>T, NR_002836.2:n.381C>A

Select item 148482025015.

rs1484820250 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 9:41007022 (GRCh38)
9:69080251 (GRCh37)
Canonical SPDI:: NC_000009.12:41007021:A:G
Gene:: PGM5P2 (Varview), FRG1HP (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.41007022A>G, NC_000009.11:g.69080251A>G, NR_002836.2:n.1965T>C

Select item 148469676016.

rs1484696760 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G,T [Show Flanks]
Chromosome:: 9:41074549 (GRCh38)
9:69147778 (GRCh37)
Canonical SPDI:: NC_000009.12:41074548:C:A,NC_000009.12:41074548:C:G,NC_000009.12:41074548:C:T
Gene:: PGM5P2 (Varview), LOC124902161 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
T=0.000468/3 (1000Genomes)
HGVS:: NC_000009.12:g.41074549C>A, NC_000009.12:g.41074549C>G, NC_000009.12:g.41074549C>T, NC_000009.11:g.69147778C>A, NC_000009.11:g.69147778C>G, NC_000009.11:g.69147778C>T, NR_002836.2:n.77G>T, NR_002836.2:n.77G>C, NR_002836.2:n.77G>A, XR_007061510.1:n.41C>A, XR_007061510.1:n.41C>G, XR_007061510.1:n.41C>T

Select item 148425023717.

rs1484250237 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,C [Show Flanks]
Chromosome:: 9:41044604 (GRCh38)
9:69117833 (GRCh37)
Canonical SPDI:: NC_000009.12:41044603:T:A,NC_000009.12:41044603:T:C
Gene:: PGM5P2 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000009.12:g.41044604T>A, NC_000009.12:g.41044604T>C, NC_000009.11:g.69117833T>A, NC_000009.11:g.69117833T>C, NR_002836.2:n.770A>T, NR_002836.2:n.770A>G

Select item 148383400318.

rs1483834003 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 9:41074587 (GRCh38)
9:69147816 (GRCh37)
Canonical SPDI:: NC_000009.12:41074586:C:G,NC_000009.12:41074586:C:T
Gene:: PGM5P2 (Varview), LOC124902161 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
G=0.00028/5 (TOMMO)
T=0.00031/2 (1000Genomes)
G=0.00225/4 (Korea1K)
G=0.00248/7 (KOREAN)
HGVS:: NC_000009.12:g.41074587C>G, NC_000009.12:g.41074587C>T, NC_000009.11:g.69147816C>G, NC_000009.11:g.69147816C>T, NR_002836.2:n.39G>C, NR_002836.2:n.39G>A, XR_007061510.1:n.79C>G, XR_007061510.1:n.79C>T

Select item 148228737519.

rs1482287375 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C,T [Show Flanks]
Chromosome:: 9:41074435 (GRCh38)
9:69147664 (GRCh37)
Canonical SPDI:: NC_000009.12:41074434:G:C,NC_000009.12:41074434:G:T
Gene:: PGM5P2 (Varview), LOC124902161 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000057/8 (GnomAD)
HGVS:: NC_000009.12:g.41074435G>C, NC_000009.12:g.41074435G>T, NC_000009.11:g.69147664G>C, NC_000009.11:g.69147664G>T, NR_002836.2:n.191C>G, NR_002836.2:n.191C>A

Select item 148155038820.

rs1481550388 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 9:41007279 (GRCh38)
9:69080508 (GRCh37)
Canonical SPDI:: NC_000009.12:41007278:A:C
Gene:: PGM5P2 (Varview), FRG1HP (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000029/4 (GnomAD)
HGVS:: NC_000009.12:g.41007279A>C, NC_000009.11:g.69080508A>C, NR_002836.2:n.1708T>G