SNP Links for Nucleotide (Select 126012576) - SNP

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Links from Nucleotide

Items: 1 to 20 of 35

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Select item 14553458331.

rs1455345833 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 15:25239886 (GRCh38)
15:25485033 (GRCh37)
Canonical SPDI:: NC_000015.10:25239885:A:G
Gene:: SNORD115-38 (Varview), SNORD115-39 (Varview), SNHG14 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,non_coding_transcript_variant,upstream_transcript_variant
Validated:: by frequency
MAF:: G=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000015.10:g.25239886A>G, NC_000015.9:g.25485033A>G, NG_002690.1:g.458977A>G, NR_003353.1:n.49A>G

Select item 14251777232.

rs1425177723 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 15:25239858 (GRCh38)
15:25485005 (GRCh37)
Canonical SPDI:: NC_000015.10:25239857:A:C
Gene:: SNORD115-38 (Varview), SNORD115-39 (Varview), SNHG14 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.25239858A>C, NC_000015.9:g.25485005A>C, NG_002690.1:g.458949A>C, NR_003353.1:n.21A>C

Select item 14100492043.

rs1410049204 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 15:25239897 (GRCh38)
15:25485044 (GRCh37)
Canonical SPDI:: NC_000015.10:25239896:T:C
Gene:: SNORD115-38 (Varview), SNORD115-39 (Varview), SNHG14 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (GnomAD_exomes)
C=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.25239897T>C, NC_000015.9:g.25485044T>C, NG_002690.1:g.458988T>C, NR_003353.1:n.60T>C

Select item 13457580044.

rs1345758004 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 15:25239862 (GRCh38)
15:25485009 (GRCh37)
Canonical SPDI:: NC_000015.10:25239861:T:A
Gene:: SNORD115-38 (Varview), SNORD115-39 (Varview), SNHG14 (Varview)
Functional Consequence:: non_coding_transcript_variant,upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000011/3 (TOPMED)
HGVS:: NC_000015.10:g.25239862T>A, NC_000015.9:g.25485009T>A, NG_002690.1:g.458953T>A, NR_003353.1:n.25T>A

Select item 12856354945.

rs1285635494 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 15:25239839 (GRCh38)
15:25484986 (GRCh37)
Canonical SPDI:: NC_000015.10:25239838:G:T
Gene:: SNORD115-38 (Varview), SNORD115-39 (Varview), SNHG14 (Varview)
Functional Consequence:: 2KB_upstream_variant,non_coding_transcript_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.25239839G>T, NC_000015.9:g.25484986G>T, NG_002690.1:g.458930G>T, NR_003353.1:n.2G>T

Select item 12810709656.

rs1281070965 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:25239855 (GRCh38)
15:25485002 (GRCh37)
Canonical SPDI:: NC_000015.10:25239854:C:T
Gene:: SNORD115-38 (Varview), SNORD115-39 (Varview), SNHG14 (Varview)
Functional Consequence:: 2KB_upstream_variant,non_coding_transcript_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (GnomAD_exomes)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.25239855C>T, NC_000015.9:g.25485002C>T, NG_002690.1:g.458946C>T, NR_003353.1:n.18C>T

Select item 12438454797.

rs1243845479 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 15:25239842 (GRCh38)
15:25484989 (GRCh37)
Canonical SPDI:: NC_000015.10:25239841:C:A
Gene:: SNORD115-38 (Varview), SNORD115-39 (Varview), SNHG14 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000015.10:g.25239842C>A, NC_000015.9:g.25484989C>A, NG_002690.1:g.458933C>A, NR_003353.1:n.5C>A

Select item 12368496608.

rs1236849660 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 15:25239916 (GRCh38)
15:25485063 (GRCh37)
Canonical SPDI:: NC_000015.10:25239915:G:A,NC_000015.10:25239915:G:T
Gene:: SNORD115-38 (Varview), SNORD115-39 (Varview), SNHG14 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0.000004/1 (GnomAD_exomes)
A=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.25239916G>A, NC_000015.10:g.25239916G>T, NC_000015.9:g.25485063G>A, NC_000015.9:g.25485063G>T, NG_002690.1:g.459007G>A, NG_002690.1:g.459007G>T, NR_003353.1:n.79G>A, NR_003353.1:n.79G>T

Select item 12351151119.

rs1235115111 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 15:25239880 (GRCh38)
15:25485027 (GRCh37)
Canonical SPDI:: NC_000015.10:25239879:T:C
Gene:: SNORD115-38 (Varview), SNORD115-39 (Varview), SNHG14 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency
MAF:: C=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000015.10:g.25239880T>C, NC_000015.9:g.25485027T>C, NG_002690.1:g.458971T>C, NR_003353.1:n.43T>C

Select item 121844697010.

rs1218446970 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 15:25239860 (GRCh38)
15:25485007 (GRCh37)
Canonical SPDI:: NC_000015.10:25239859:A:G
Gene:: SNORD115-38 (Varview), SNORD115-39 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (GnomAD_exomes)
G=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.25239860A>G, NC_000015.9:g.25485007A>G, NG_002690.1:g.458951A>G, NR_003353.1:n.23A>G

Select item 120575469911.

rs1205754699 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 15:25239878 (GRCh38)
15:25485025 (GRCh37)
Canonical SPDI:: NC_000015.10:25239877:G:A
Gene:: SNORD115-38 (Varview), SNORD115-39 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant
HGVS:: NC_000015.10:g.25239878G>A, NC_000015.9:g.25485025G>A, NG_002690.1:g.458969G>A, NR_003353.1:n.41G>A

Select item 99479246712.

rs994792467 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: 15:25239894 (GRCh38)
15:25485041 (GRCh37)
Canonical SPDI:: NC_000015.10:25239893:T:C,NC_000015.10:25239893:T:G
Gene:: SNORD115-38 (Varview), SNORD115-39 (Varview), SNHG14 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,non_coding_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.25239894T>C, NC_000015.10:g.25239894T>G, NC_000015.9:g.25485041T>C, NC_000015.9:g.25485041T>G, NG_002690.1:g.458985T>C, NG_002690.1:g.458985T>G, NR_003353.1:n.57T>C, NR_003353.1:n.57T>G

Select item 90634059813.

rs906340598 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 15:25239873 (GRCh38)
15:25485020 (GRCh37)
Canonical SPDI:: NC_000015.10:25239872:G:T
Gene:: SNORD115-38 (Varview), SNORD115-39 (Varview), SNHG14 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,upstream_transcript_variant,2KB_upstream_variant
HGVS:: NC_000015.10:g.25239873G>T, NC_000015.9:g.25485020G>T, NG_002690.1:g.458964G>T, NR_003353.1:n.36G>T

Select item 77937524114.

rs779375241 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 15:25239838 (GRCh38)
15:25484985 (GRCh37)
Canonical SPDI:: NC_000015.10:25239837:G:T
Gene:: SNORD115-38 (Varview), SNORD115-39 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000087/2 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000009/1 (ExAC)
T=0.000017/4 (GnomAD_exomes)
HGVS:: NC_000015.10:g.25239838G>T, NC_000015.9:g.25484985G>T, NG_002690.1:g.458929G>T, NR_003353.1:n.1G>T

Select item 77707518215.

rs777075182 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C,T [Show Flanks]
Chromosome:: 15:25239910 (GRCh38)
15:25485057 (GRCh37)
Canonical SPDI:: NC_000015.10:25239909:G:A,NC_000015.10:25239909:G:C,NC_000015.10:25239909:G:T
Gene:: SNORD115-38 (Varview), SNORD115-39 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0.00034/1 (KOREAN)
HGVS:: NC_000015.10:g.25239910G>A, NC_000015.10:g.25239910G>C, NC_000015.10:g.25239910G>T, NC_000015.9:g.25485057G>A, NC_000015.9:g.25485057G>C, NC_000015.9:g.25485057G>T, NG_002690.1:g.459001G>A, NG_002690.1:g.459001G>C, NG_002690.1:g.459001G>T, NR_003353.1:n.73G>A, NR_003353.1:n.73G>C, NR_003353.1:n.73G>T

Select item 77705670616.

rs777056706 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:25239859 (GRCh38)
15:25485006 (GRCh37)
Canonical SPDI:: NC_000015.10:25239858:C:T
Gene:: SNORD115-38 (Varview), SNORD115-39 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000009/1 (ExAC)
T=0.000156/1 (1000Genomes)
T=0.001027/3 (KOREAN)
T=0.001092/2 (Korea1K)
T=0.007679/129 (TOMMO)
HGVS:: NC_000015.10:g.25239859C>T, NC_000015.9:g.25485006C>T, NG_002690.1:g.458950C>T, NR_003353.1:n.22C>T

Select item 77374224017.

rs773742240 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 15:25239847 (GRCh38)
15:25484994 (GRCh37)
Canonical SPDI:: NC_000015.10:25239846:A:G
Gene:: SNORD115-38 (Varview), SNORD115-39 (Varview), SNHG14 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000142/2 (ALFA)
G=0.000009/1 (ExAC)
G=0.000009/2 (GnomAD_exomes)
G=0.000071/10 (GnomAD)
G=0.000072/19 (TOPMED)
HGVS:: NC_000015.10:g.25239847A>G, NC_000015.9:g.25484994A>G, NG_002690.1:g.458938A>G, NR_003353.1:n.10A>G

Select item 77242189318.

rs772421893 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 15:25239844 (GRCh38)
15:25484991 (GRCh37)
Canonical SPDI:: NC_000015.10:25239843:A:G
Gene:: SNORD115-38 (Varview), SNORD115-39 (Varview), SNHG14 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant,intron_variant
Validated:: by frequency,by cluster
MAF:: G=0.000026/6 (GnomAD_exomes)
G=0.000027/3 (ExAC)
G=0.000142/2 (TOMMO)
HGVS:: NC_000015.10:g.25239844A>G, NC_000015.9:g.25484991A>G, NG_002690.1:g.458935A>G, NR_003353.1:n.7A>G

Select item 75976209519.

rs759762095 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 15:25239868 (GRCh38)
15:25485015 (GRCh37)
Canonical SPDI:: NC_000015.10:25239867:G:A
Gene:: SNORD115-38 (Varview), SNORD115-39 (Varview), SNHG14 (Varview)
Functional Consequence:: non_coding_transcript_variant,2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by cluster
MAF:: A=0.000004/1 (GnomAD_exomes)
A=0.000009/1 (ExAC)
HGVS:: NC_000015.10:g.25239868G>A, NC_000015.9:g.25485015G>A, NG_002690.1:g.458959G>A, NR_003353.1:n.31G>A

Select item 75729949620.

rs757299496 [Homo sapiens]

Variant type:: DELINS
Alleles:: GA>- [Show Flanks]
Chromosome:: 15:25239875 (GRCh38)
15:25485022 (GRCh37)
Canonical SPDI:: NC_000015.10:25239869:AGAGAGA:AGAGA
Gene:: SNORD115-38 (Varview), SNORD115-39 (Varview), SNHG14 (Varview)
Functional Consequence:: non_coding_transcript_variant,2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by cluster
MAF:: -=0.000009/1 (ExAC)
HGVS:: NC_000015.10:g.25239871GA[2], NC_000015.9:g.25485018GA[2], NG_002690.1:g.458962GA[2], NR_003353.1:n.34GA[2]