SNP Links for Nucleotide (Select 126012514) - SNP

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Links from Nucleotide

Items: 1 to 20 of 38

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Select item 14003668961.

rs1400366896 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 15:25241783 (GRCh38)
15:25486930 (GRCh37)
Canonical SPDI:: NC_000015.10:25241782:G:A
Gene:: SNORD115-39 (Varview), SNORD115-40 (Varview), SNHG14 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000009/2 (GnomAD_exomes)
HGVS:: NC_000015.10:g.25241783G>A, NC_000015.9:g.25486930G>A, NG_002690.1:g.460874G>A, NR_003354.1:n.38G>A

Select item 13793616972.

rs1379361697 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 15:25241753 (GRCh38)
15:25486900 (GRCh37)
Canonical SPDI:: NC_000015.10:25241752:T:C
Gene:: SNORD115-39 (Varview), SNORD115-40 (Varview), SNHG14 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000015.10:g.25241753T>C, NC_000015.9:g.25486900T>C, NG_002690.1:g.460844T>C, NR_003354.1:n.8T>C

Select item 13642346253.

rs1364234625 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 15:25241779 (GRCh38)
15:25486926 (GRCh37)
Canonical SPDI:: NC_000015.10:25241778:G:A
Gene:: SNORD115-39 (Varview), SNORD115-40 (Varview), SNHG14 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000009/2 (GnomAD_exomes)
HGVS:: NC_000015.10:g.25241779G>A, NC_000015.9:g.25486926G>A, NG_002690.1:g.460870G>A, NR_003354.1:n.34G>A

Select item 13578970014.

rs1357897001 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 15:25241789 (GRCh38)
15:25486936 (GRCh37)
Canonical SPDI:: NC_000015.10:25241788:G:A
Gene:: SNORD115-39 (Varview), SNORD115-40 (Varview), SNHG14 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency
MAF:: A=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000015.10:g.25241789G>A, NC_000015.9:g.25486936G>A, NG_002690.1:g.460880G>A, NR_003354.1:n.44G>A

Select item 13520944785.

rs1352094478 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 15:25241826 (GRCh38)
15:25486973 (GRCh37)
Canonical SPDI:: NC_000015.10:25241825:C:A
Gene:: SNORD115-39 (Varview), SNORD115-40 (Varview), SNHG14 (Varview)
Functional Consequence:: non_coding_transcript_variant,upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by cluster
MAF:: A=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.25241826C>A, NC_000015.9:g.25486973C>A, NG_002690.1:g.460917C>A, NR_003354.1:n.81C>A

Select item 13366641926.

rs1336664192 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 15:25241795 (GRCh38)
15:25486942 (GRCh37)
Canonical SPDI:: NC_000015.10:25241794:A:G
Gene:: SNORD115-39 (Varview), SNORD115-40 (Varview), SNHG14 (Varview)
Functional Consequence:: non_coding_transcript_variant,upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency
MAF:: G=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000015.10:g.25241795A>G, NC_000015.9:g.25486942A>G, NG_002690.1:g.460886A>G, NR_003354.1:n.50A>G

Select item 13129887727.

rs1312988772 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 15:25241809 (GRCh38)
15:25486956 (GRCh37)
Canonical SPDI:: NC_000015.10:25241808:T:C
Gene:: SNORD115-39 (Varview), SNORD115-40 (Varview), SNHG14 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.25241809T>C, NC_000015.9:g.25486956T>C, NG_002690.1:g.460900T>C, NR_003354.1:n.64T>C

Select item 13069166858.

rs1306916685 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 15:25241793 (GRCh38)
15:25486940 (GRCh37)
Canonical SPDI:: NC_000015.10:25241792:T:C
Gene:: SNORD115-39 (Varview), SNORD115-40 (Varview), SNHG14 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: C=0.000111/1 (ALFA)
C=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000015.10:g.25241793T>C, NC_000015.9:g.25486940T>C, NG_002690.1:g.460884T>C, NR_003354.1:n.48T>C

Select item 12760787359.

rs1276078735 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 15:25241762 (GRCh38)
15:25486909 (GRCh37)
Canonical SPDI:: NC_000015.10:25241761:T:C
Gene:: SNORD115-39 (Varview), SNORD115-40 (Varview), SNHG14 (Varview)
Functional Consequence:: 2KB_upstream_variant,non_coding_transcript_variant,intron_variant,upstream_transcript_variant
HGVS:: NC_000015.10:g.25241762T>C, NC_000015.9:g.25486909T>C, NG_002690.1:g.460853T>C, NR_003354.1:n.17T>C

Select item 127267584710.

rs1272675847 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 15:25241802 (GRCh38)
15:25486949 (GRCh37)
Canonical SPDI:: NC_000015.10:25241801:T:C
Gene:: SNORD115-39 (Varview), SNORD115-40 (Varview), SNHG14 (Varview)
Functional Consequence:: 2KB_upstream_variant,non_coding_transcript_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency
MAF:: C=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000015.10:g.25241802T>C, NC_000015.9:g.25486949T>C, NG_002690.1:g.460893T>C, NR_003354.1:n.57T>C

Select item 125948694811.

rs1259486948 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 15:25241769 (GRCh38)
15:25486916 (GRCh37)
Canonical SPDI:: NC_000015.10:25241768:T:C
Gene:: SNORD115-39 (Varview), SNORD115-40 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (GnomAD_exomes)
C=0.000008/2 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000015.10:g.25241769T>C, NC_000015.9:g.25486916T>C, NG_002690.1:g.460860T>C, NR_003354.1:n.24T>C

Select item 122966033512.

rs1229660335 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 15:25241768 (GRCh38)
15:25486915 (GRCh37)
Canonical SPDI:: NC_000015.10:25241767:A:G
Gene:: SNORD115-39 (Varview), SNORD115-40 (Varview), SNHG14 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.25241768A>G, NC_000015.9:g.25486915A>G, NG_002690.1:g.460859A>G, NR_003354.1:n.23A>G

Select item 118080764213.

rs1180807642 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 15:25241776 (GRCh38)
15:25486923 (GRCh37)
Canonical SPDI:: NC_000015.10:25241775:G:A
Gene:: SNORD115-39 (Varview), SNORD115-40 (Varview), SNHG14 (Varview)
Functional Consequence:: non_coding_transcript_variant,upstream_transcript_variant,intron_variant,2KB_upstream_variant
HGVS:: NC_000015.10:g.25241776G>A, NC_000015.9:g.25486923G>A, NG_002690.1:g.460867G>A, NR_003354.1:n.31G>A

Select item 104279513514.

rs1042795135 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 15:25241763 (GRCh38)
15:25486910 (GRCh37)
Canonical SPDI:: NC_000015.10:25241762:C:A,NC_000015.10:25241762:C:T
Gene:: SNORD115-39 (Varview), SNORD115-40 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,non_coding_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000015.10:g.25241763C>A, NC_000015.10:g.25241763C>T, NC_000015.9:g.25486910C>A, NC_000015.9:g.25486910C>T, NG_002690.1:g.460854C>A, NG_002690.1:g.460854C>T, NR_003354.1:n.18C>A, NR_003354.1:n.18C>T

Select item 93450547715.

rs934505477 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:25241773 (GRCh38)
15:25486920 (GRCh37)
Canonical SPDI:: NC_000015.10:25241772:C:T
Gene:: SNORD115-39 (Varview), SNORD115-40 (Varview), SNHG14 (Varview)
Functional Consequence:: 2KB_upstream_variant,non_coding_transcript_variant,upstream_transcript_variant,intron_variant
HGVS:: NC_000015.10:g.25241773C>T, NC_000015.9:g.25486920C>T, NG_002690.1:g.460864C>T, NR_003354.1:n.28C>T

Select item 78040711716.

rs780407117 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 15:25241751 (GRCh38)
15:25486898 (GRCh37)
Canonical SPDI:: NC_000015.10:25241750:A:C
Gene:: SNORD115-39 (Varview), SNORD115-40 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
C=0.000009/1 (ExAC)
C=0.000009/2 (GnomAD_exomes)
HGVS:: NC_000015.10:g.25241751A>C, NC_000015.9:g.25486898A>C, NG_002690.1:g.460842A>C, NR_003354.1:n.6A>C

Select item 77907381117.

rs779073811 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 15:25241761 (GRCh38)
15:25486908 (GRCh37)
Canonical SPDI:: NC_000015.10:25241760:A:G
Gene:: SNORD115-39 (Varview), SNORD115-40 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000021/3 (GnomAD)
G=0.000039/9 (GnomAD_exomes)
G=0.000045/12 (TOPMED)
G=0.000053/6 (ExAC)
HGVS:: NC_000015.10:g.25241761A>G, NC_000015.9:g.25486908A>G, NG_002690.1:g.460852A>G, NR_003354.1:n.16A>G

Select item 77644189518.

rs776441895 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 15:25241787 (GRCh38)
15:25486934 (GRCh37)
Canonical SPDI:: NC_000015.10:25241786:A:G
Gene:: SNORD115-39 (Varview), SNORD115-40 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by cluster
MAF:: G=0.000004/1 (GnomAD_exomes)
G=0.000009/1 (ExAC)
HGVS:: NC_000015.10:g.25241787A>G, NC_000015.9:g.25486934A>G, NG_002690.1:g.460878A>G, NR_003354.1:n.42A>G

Select item 77308552819.

rs773085528 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,C [Show Flanks]
Chromosome:: 15:25241770 (GRCh38)
15:25486917 (GRCh37)
Canonical SPDI:: NC_000015.10:25241769:T:A,NC_000015.10:25241769:T:C
Gene:: SNORD115-39 (Varview), SNORD115-40 (Varview), SNHG14 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000009/1 (ExAC)
HGVS:: NC_000015.10:g.25241770T>A, NC_000015.10:g.25241770T>C, NC_000015.9:g.25486917T>A, NC_000015.9:g.25486917T>C, NG_002690.1:g.460861T>A, NG_002690.1:g.460861T>C, NR_003354.1:n.25T>A, NR_003354.1:n.25T>C

Select item 76502462320.

rs765024623 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 15:25241798 (GRCh38)
15:25486945 (GRCh37)
Canonical SPDI:: NC_000015.10:25241797:A:G
Gene:: SNORD115-39 (Varview), SNORD115-40 (Varview), SNHG14 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant,intron_variant
Validated:: by frequency,by cluster
MAF:: G=0.000004/1 (GnomAD_exomes)
G=0.000009/1 (ExAC)
HGVS:: NC_000015.10:g.25241798A>G, NC_000015.9:g.25486945A>G, NG_002690.1:g.460889A>G, NR_003354.1:n.53A>G