SNP Links for Nucleotide (Select 1040735441) - SNP

Links from Nucleotide

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Select item 14915432571.

rs1491543257 has merged into rs869195749 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTTTT>-,T,TT,TTT,TTTT,TTTTTT,TTTTTTT,TTTTTTTT,TTTTTTTTT [Show Flanks]
Chromosome:: 2:230951770 (GRCh38)
2:231816485 (GRCh37)
Canonical SPDI:: NC_000002.12:230951756:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTT,NC_000002.12:230951756:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000002.12:230951756:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000002.12:230951756:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000002.12:230951756:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000002.12:230951756:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT,NC_000002.12:230951756:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTT,NC_000002.12:230951756:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT,NC_000002.12:230951756:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTT
Gene:: GPR55 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTTTTTTTT=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000002.12:g.230951770_230951774del, NC_000002.12:g.230951771_230951774del, NC_000002.12:g.230951772_230951774del, NC_000002.12:g.230951773_230951774del, NC_000002.12:g.230951774del, NC_000002.12:g.230951774dup, NC_000002.12:g.230951773_230951774dup, NC_000002.12:g.230951772_230951774dup, NC_000002.12:g.230951771_230951774dup, NC_000002.11:g.231816485_231816489del, NC_000002.11:g.231816486_231816489del, NC_000002.11:g.231816487_231816489del, NC_000002.11:g.231816488_231816489del, NC_000002.11:g.231816489del, NC_000002.11:g.231816489dup, NC_000002.11:g.231816488_231816489dup, NC_000002.11:g.231816487_231816489dup, NC_000002.11:g.231816486_231816489dup, NG_050956.1:g.14467_14471del, NG_050956.1:g.14468_14471del, NG_050956.1:g.14469_14471del, NG_050956.1:g.14470_14471del, NG_050956.1:g.14471del, NG_050956.1:g.14471dup, NG_050956.1:g.14470_14471dup, NG_050956.1:g.14469_14471dup, NG_050956.1:g.14468_14471dup

Select item 14915322932.

rs1491532293 has merged into rs74270934 [Homo sapiens]

Variant type:: DELINS
Alleles:: TT>-,T,TTT,TTTT,TTTTT,TTTTTT,TTTTTTTTT [Show Flanks]
Chromosome:: 2:230956933 (GRCh38)
2:231821648 (GRCh37)
Canonical SPDI:: NC_000002.12:230956921:TTTTTTTTTTTTT:TTTTTTTTTTT,NC_000002.12:230956921:TTTTTTTTTTTTT:TTTTTTTTTTTT,NC_000002.12:230956921:TTTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000002.12:230956921:TTTTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000002.12:230956921:TTTTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000002.12:230956921:TTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000002.12:230956921:TTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTT
Gene:: GPR55 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTTTTTTTT=0./0 (ALFA)
T=0.27023/1002 (TWINSUK)
T=0.2932/1130 (ALSPAC)
HGVS:: NC_000002.12:g.230956933_230956934del, NC_000002.12:g.230956934del, NC_000002.12:g.230956934dup, NC_000002.12:g.230956933_230956934dup, NC_000002.12:g.230956932_230956934dup, NC_000002.12:g.230956931_230956934dup, NC_000002.12:g.230956928_230956934dup, NC_000002.11:g.231821648_231821649del, NC_000002.11:g.231821649del, NC_000002.11:g.231821649dup, NC_000002.11:g.231821648_231821649dup, NC_000002.11:g.231821647_231821649dup, NC_000002.11:g.231821646_231821649dup, NC_000002.11:g.231821643_231821649dup, NG_050956.1:g.9305_9306del, NG_050956.1:g.9306del, NG_050956.1:g.9306dup, NG_050956.1:g.9305_9306dup, NG_050956.1:g.9304_9306dup, NG_050956.1:g.9303_9306dup, NG_050956.1:g.9300_9306dup

Select item 14915156353.

rs1491515635 [Homo sapiens]

Variant type:: INS
Alleles:: ->C [Show Flanks]
Chromosome:: 2:230956922 (GRCh38)
2:231821638 (GRCh37)
Canonical SPDI:: NC_000002.12:230956922::C
Gene:: GPR55 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: C=0.00059/7 (ALFA)
C=0.0008/50 (GnomAD)
HGVS:: NC_000002.12:g.230956922_230956923insC, NC_000002.11:g.231821637_231821638insC, NG_050956.1:g.9305_9306insG

Select item 14914994014.

rs1491499401 [Homo sapiens]

Variant type:: DEL
Alleles:: TA>- [Show Flanks]
Chromosome:: 2:230917931 (GRCh38)
2:231782646 (GRCh37)
Canonical SPDI:: NC_000002.12:230917930:TA:
Gene:: GPR55 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0.00008/1 (ALFA)
HGVS:: NC_000002.12:g.230917931_230917932del, NC_000002.11:g.231782646_231782647del, NG_050956.1:g.48296_48297del

Select item 14914603305.

rs1491460330 has merged into rs56203003 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTT>-,T,TT,TTTT [Show Flanks]
Chromosome:: 2:230951936 (GRCh38)
2:231816651 (GRCh37)
Canonical SPDI:: NC_000002.12:230951925:TTTTTTTTTTTTT:TTTTTTTTTT,NC_000002.12:230951925:TTTTTTTTTTTTT:TTTTTTTTTTT,NC_000002.12:230951925:TTTTTTTTTTTTT:TTTTTTTTTTTT,NC_000002.12:230951925:TTTTTTTTTTTTT:TTTTTTTTTTTTTT
Gene:: GPR55 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTTTTTTT=0.0006/6 (ALFA)
-=0.3/12 (GENOME_DK)
-=0.385/231 (NorthernSweden)
HGVS:: NC_000002.12:g.230951936_230951938del, NC_000002.12:g.230951937_230951938del, NC_000002.12:g.230951938del, NC_000002.12:g.230951938dup, NC_000002.11:g.231816651_231816653del, NC_000002.11:g.231816652_231816653del, NC_000002.11:g.231816653del, NC_000002.11:g.231816653dup, NG_050956.1:g.14300_14302del, NG_050956.1:g.14301_14302del, NG_050956.1:g.14302del, NG_050956.1:g.14302dup

Select item 14914083136.

rs1491408313 has merged into rs66962280 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAA>-,A,AA,AAA,AAAAA,AAAAAA,AAAAAAAAAAAAA,AAAAAAAAAAAAAAA [Show Flanks]
Chromosome:: 2:230938410 (GRCh38)
2:231803125 (GRCh37)
Canonical SPDI:: NC_000002.12:230938397:AAAAAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000002.12:230938397:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000002.12:230938397:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000002.12:230938397:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000002.12:230938397:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000002.12:230938397:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA,NC_000002.12:230938397:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAA,NC_000002.12:230938397:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAA
Gene:: GPR55 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAAAAAAA=0./0 (ALFA)
-=0.35/14 (GENOME_DK)
HGVS:: NC_000002.12:g.230938410_230938413del, NC_000002.12:g.230938411_230938413del, NC_000002.12:g.230938412_230938413del, NC_000002.12:g.230938413del, NC_000002.12:g.230938413dup, NC_000002.12:g.230938412_230938413dup, NC_000002.12:g.230938405_230938413dup, NC_000002.12:g.230938403_230938413dup, NC_000002.11:g.231803125_231803128del, NC_000002.11:g.231803126_231803128del, NC_000002.11:g.231803127_231803128del, NC_000002.11:g.231803128del, NC_000002.11:g.231803128dup, NC_000002.11:g.231803127_231803128dup, NC_000002.11:g.231803120_231803128dup, NC_000002.11:g.231803118_231803128dup, NG_050956.1:g.27827_27830del, NG_050956.1:g.27828_27830del, NG_050956.1:g.27829_27830del, NG_050956.1:g.27830del, NG_050956.1:g.27830dup, NG_050956.1:g.27829_27830dup, NG_050956.1:g.27822_27830dup, NG_050956.1:g.27820_27830dup

Select item 14912894577.

rs1491289457 [Homo sapiens]

Variant type:: DEL
Alleles:: CA>- [Show Flanks]
Chromosome:: 2:230938146 (GRCh38)
2:231802861 (GRCh37)
Canonical SPDI:: NC_000002.12:230938145:CA:
Gene:: GPR55 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: -=0.00008/1 (ALFA)
-=0.00028/7 (TOMMO)
HGVS:: NC_000002.12:g.230938146_230938147del, NC_000002.11:g.231802861_231802862del, NG_050956.1:g.28081_28082del

Select item 14911252168.

rs1491125216 [Homo sapiens]

Variant type:: DEL
Alleles:: CA>- [Show Flanks]
Chromosome:: 2:230938397 (GRCh38)
2:231803112 (GRCh37)
Canonical SPDI:: NC_000002.12:230938396:CA:
Gene:: GPR55 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.00003/3 (GnomAD)
HGVS:: NC_000002.12:g.230938397_230938398del, NC_000002.11:g.231803112_231803113del, NG_050956.1:g.27830_27831del

Select item 14909532299.

rs1490953229 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 2:230911510 (GRCh38)
2:231776225 (GRCh37)
Canonical SPDI:: NC_000002.12:230911509:A:G
Gene:: GPR55 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000015/4 (TOPMED)
HGVS:: NC_000002.12:g.230911510A>G, NC_000002.11:g.231776225A>G, NG_050956.1:g.54718T>C

Select item 149087226810.

rs1490872268 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 2:230940420 (GRCh38)
2:231805135 (GRCh37)
Canonical SPDI:: NC_000002.12:230940419:C:G,NC_000002.12:230940419:C:T
Gene:: GPR55 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000002.12:g.230940420C>G, NC_000002.12:g.230940420C>T, NC_000002.11:g.231805135C>G, NC_000002.11:g.231805135C>T, NG_050956.1:g.25808G>C, NG_050956.1:g.25808G>A

Select item 149082249111.

rs1490822491 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 2:230941140 (GRCh38)
2:231805855 (GRCh37)
Canonical SPDI:: NC_000002.12:230941139:G:A
Gene:: GPR55 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000002.12:g.230941140G>A, NC_000002.11:g.231805855G>A, NG_050956.1:g.25088C>T

Select item 149080886512.

rs1490808865 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 2:230935409 (GRCh38)
2:231800124 (GRCh37)
Canonical SPDI:: NC_000002.12:230935408:C:T
Gene:: GPR55 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000021/3 (GnomAD)
T=0.000064/17 (TOPMED)
T=0.000156/1 (1000Genomes)
T=0.000342/1 (KOREAN)
T=0.000354/6 (TOMMO)
T=0.000546/1 (Korea1K)
HGVS:: NC_000002.12:g.230935409C>T, NC_000002.11:g.231800124C>T, NG_050956.1:g.30819G>A

Select item 149076784313.

rs1490767843 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->T [Show Flanks]
Chromosome:: 2:230954495 (GRCh38)
2:231819211 (GRCh37)
Canonical SPDI:: NC_000002.12:230954495:T:TT
Gene:: GPR55 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TT=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000011/3 (TOPMED)
HGVS:: NC_000002.12:g.230954496dup, NC_000002.11:g.231819211dup, NG_050956.1:g.11732dup

Select item 149069697114.

rs1490696971 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 2:230918482 (GRCh38)
2:231783197 (GRCh37)
Canonical SPDI:: NC_000002.12:230918481:A:G
Gene:: GPR55 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.230918482A>G, NC_000002.11:g.231783197A>G, NG_050956.1:g.47746T>C

Select item 149055151715.

rs1490551517 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 2:230963449 (GRCh38)
2:231828164 (GRCh37)
Canonical SPDI:: NC_000002.12:230963448:G:A
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.230963449G>A, NC_000002.11:g.231828164G>A, NG_050956.1:g.2779C>T

Select item 149052815316.

rs1490528153 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 2:230948705 (GRCh38)
2:231813420 (GRCh37)
Canonical SPDI:: NC_000002.12:230948704:C:T
Gene:: GPR55 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000002.12:g.230948705C>T, NC_000002.11:g.231813420C>T, NG_050956.1:g.17523G>A

Select item 149050063117.

rs1490500631 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 2:230964053 (GRCh38)
2:231828768 (GRCh37)
Canonical SPDI:: NC_000002.12:230964052:A:G
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
HGVS:: NC_000002.12:g.230964053A>G, NC_000002.11:g.231828768A>G, NG_050956.1:g.2175T>C

Select item 149042735318.

rs1490427353 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 2:230949797 (GRCh38)
2:231814512 (GRCh37)
Canonical SPDI:: NC_000002.12:230949796:C:A,NC_000002.12:230949796:C:T
Gene:: GPR55 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000224/1 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000223/1 (Estonian)
HGVS:: NC_000002.12:g.230949797C>A, NC_000002.12:g.230949797C>T, NC_000002.11:g.231814512C>A, NC_000002.11:g.231814512C>T, NG_050956.1:g.16431G>T, NG_050956.1:g.16431G>A

Select item 149042543619.

rs1490425436 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 2:230927495 (GRCh38)
2:231792210 (GRCh37)
Canonical SPDI:: NC_000002.12:230927494:T:C
Gene:: GPR55 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000008/2 (TOPMED)
HGVS:: NC_000002.12:g.230927495T>C, NC_000002.11:g.231792210T>C, NG_050956.1:g.38733A>G

Select item 149033699120.

rs1490336991 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 2:230918485 (GRCh38)
2:231783200 (GRCh37)
Canonical SPDI:: NC_000002.12:230918484:C:T
Gene:: GPR55 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000008/2 (TOPMED)
T=0.000035/1 (TOMMO)
T=0.000546/1 (Korea1K)
HGVS:: NC_000002.12:g.230918485C>T, NC_000002.11:g.231783200C>T, NG_050956.1:g.47743G>A

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