SNP Links for Nucleotide (Select 1013071132) - SNP

Links from Nucleotide

Items: 1 to 20 of 710

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Select item 14909086061.

rs1490908606 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 15:100913361 (GRCh38)
15:101453566 (GRCh37)
Canonical SPDI:: NC_000015.10:100913360:T:C
Gene:: ALDH1A3 (Varview), ALDH1A3-AS1 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.100913361T>C, NC_000015.9:g.101453566T>C, NG_012254.1:g.38558T>C, NR_135831.1:n.4016A>G, NR_135828.1:n.3100A>G

Select item 14904177472.

rs1490417747 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 15:100913834 (GRCh38)
15:101454039 (GRCh37)
Canonical SPDI:: NC_000015.10:100913833:T:C
Gene:: ALDH1A3 (Varview), ALDH1A3-AS1 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.100913834T>C, NC_000015.9:g.101454039T>C, NG_012254.1:g.39031T>C, NR_135831.1:n.3543A>G, NR_135828.1:n.2627A>G

Select item 14890648283.

rs1489064828 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: 15:100913714 (GRCh38)
15:101453919 (GRCh37)
Canonical SPDI:: NC_000015.10:100913713:T:C,NC_000015.10:100913713:T:G
Gene:: ALDH1A3 (Varview), ALDH1A3-AS1 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
C=0.000008/2 (TOPMED)
HGVS:: NC_000015.10:g.100913714T>C, NC_000015.10:g.100913714T>G, NC_000015.9:g.101453919T>C, NC_000015.9:g.101453919T>G, NG_012254.1:g.38911T>C, NG_012254.1:g.38911T>G, NR_135831.1:n.3663A>G, NR_135831.1:n.3663A>C, NR_135828.1:n.2747A>G, NR_135828.1:n.2747A>C

Select item 14881131284.

rs1488113128 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 15:100915302 (GRCh38)
15:101455507 (GRCh37)
Canonical SPDI:: NC_000015.10:100915301:T:G
Gene:: ALDH1A3 (Varview), ALDH1A3-AS1 (Varview)
Functional Consequence:: 3_prime_UTR_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000015.10:g.100915302T>G, NC_000015.9:g.101455507T>G, NG_052791.1:g.1286T>G, NG_012254.1:g.40499T>G, NM_000693.4:c.*529T>G, NM_000693.3:c.*529T>G, NM_000693.2:c.*529T>G, NM_001293815.2:c.*529T>G, NM_001293815.1:c.*529T>G, NR_135831.1:n.2075A>C, NR_135828.1:n.1159A>C

Select item 14871277015.

rs1487127701 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:100915863 (GRCh38)
15:101456068 (GRCh37)
Canonical SPDI:: NC_000015.10:100915862:C:T
Gene:: ALDH1A3 (Varview), ALDH1A3-AS1 (Varview)
Functional Consequence:: 3_prime_UTR_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.100915863C>T, NC_000015.9:g.101456068C>T, NG_052791.1:g.1847C>T, NG_012254.1:g.41060C>T, NM_000693.4:c.*1090C>T, NM_000693.3:c.*1090C>T, NM_000693.2:c.*1090C>T, NM_001293815.2:c.*1090C>T, NM_001293815.1:c.*1090C>T, NR_135831.1:n.1514G>A, NR_135828.1:n.598G>A

Select item 14867245576.

rs1486724557 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 15:100915948 (GRCh38)
15:101456153 (GRCh37)
Canonical SPDI:: NC_000015.10:100915947:T:G
Gene:: ALDH1A3 (Varview), ALDH1A3-AS1 (Varview)
Functional Consequence:: 3_prime_UTR_variant,intron_variant,non_coding_transcript_variant
HGVS:: NC_000015.10:g.100915948T>G, NC_000015.9:g.101456153T>G, NG_052791.1:g.1932T>G, NG_012254.1:g.41145T>G, NM_000693.4:c.*1175T>G, NM_000693.3:c.*1175T>G, NM_000693.2:c.*1175T>G, NM_001293815.2:c.*1175T>G, NM_001293815.1:c.*1175T>G, NR_135831.1:n.1429A>C, NR_135828.1:n.513A>C

Select item 14858366667.

rs1485836666 [Homo sapiens]

Variant type:: DELINS
Alleles:: GC>- [Show Flanks]
Chromosome:: 15:100918993 (GRCh38)
15:101459198 (GRCh37)
Canonical SPDI:: NC_000015.10:100918988:GCGCGC:GCGC
Gene:: LRRK1 (Varview), ALDH1A3-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GCGC=0.000142/2 (ALFA)
-=0.000014/2 (GnomAD)
-=0.000015/4 (TOPMED)
HGVS:: NC_000015.10:g.100918989GC[2], NC_000015.9:g.101459194GC[2], NG_052791.1:g.4973GC[2], NR_135827.1:n.290GC[2], NR_135831.1:n.290GC[2], NR_135828.1:n.290GC[2]

Select item 14856606428.

rs1485660642 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 15:100914256 (GRCh38)
15:101454461 (GRCh37)
Canonical SPDI:: NC_000015.10:100914255:C:G
Gene:: ALDH1A3 (Varview), ALDH1A3-AS1 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.100914256C>G, NC_000015.9:g.101454461C>G, NG_052791.1:g.240C>G, NG_012254.1:g.39453C>G, NR_135831.1:n.3121G>C, NR_135828.1:n.2205G>C

Select item 14848677429.

rs1484867742 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:100913686 (GRCh38)
15:101453891 (GRCh37)
Canonical SPDI:: NC_000015.10:100913685:C:T
Gene:: ALDH1A3 (Varview), ALDH1A3-AS1 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000011/3 (TOPMED)
HGVS:: NC_000015.10:g.100913686C>T, NC_000015.9:g.101453891C>T, NG_012254.1:g.38883C>T, NR_135831.1:n.3691G>A, NR_135828.1:n.2775G>A

Select item 148369508410.

rs1483695084 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 15:100915215 (GRCh38)
15:101455420 (GRCh37)
Canonical SPDI:: NC_000015.10:100915214:G:A
Gene:: ALDH1A3 (Varview), ALDH1A3-AS1 (Varview)
Functional Consequence:: 3_prime_UTR_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000015.10:g.100915215G>A, NC_000015.9:g.101455420G>A, NG_052791.1:g.1199G>A, NG_012254.1:g.40412G>A, NM_000693.4:c.*442G>A, NM_000693.3:c.*442G>A, NM_000693.2:c.*442G>A, NM_001293815.2:c.*442G>A, NM_001293815.1:c.*442G>A, NR_135831.1:n.2162C>T, NR_135828.1:n.1246C>T

Select item 148054167111.

rs1480541671 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 15:100913983 (GRCh38)
15:101454188 (GRCh37)
Canonical SPDI:: NC_000015.10:100913982:G:A
Gene:: ALDH1A3 (Varview), ALDH1A3-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000014/2 (GnomAD)
A=0.000015/4 (TOPMED)
HGVS:: NC_000015.10:g.100913983G>A, NC_000015.9:g.101454188G>A, NG_012254.1:g.39180G>A, NR_135831.1:n.3394C>T, NR_135828.1:n.2478C>T

Select item 147999208712.

rs1479992087 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 15:100913998 (GRCh38)
15:101454203 (GRCh37)
Canonical SPDI:: NC_000015.10:100913997:A:C
Gene:: ALDH1A3 (Varview), ALDH1A3-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000015.10:g.100913998A>C, NC_000015.9:g.101454203A>C, NG_012254.1:g.39195A>C, NR_135831.1:n.3379T>G, NR_135828.1:n.2463T>G

Select item 147957789713.

rs1479577897 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 15:100914498 (GRCh38)
15:101454703 (GRCh37)
Canonical SPDI:: NC_000015.10:100914497:T:C
Gene:: ALDH1A3 (Varview), ALDH1A3-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.100914498T>C, NC_000015.9:g.101454703T>C, NG_052791.1:g.482T>C, NG_012254.1:g.39695T>C, NR_135831.1:n.2879A>G, NR_135828.1:n.1963A>G

Select item 147888758014.

rs1478887580 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 15:100918830 (GRCh38)
15:101459035 (GRCh37)
Canonical SPDI:: NC_000015.10:100918829:C:A,NC_000015.10:100918829:C:T
Gene:: LRRK1 (Varview), ALDH1A3-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000015.10:g.100918830C>A, NC_000015.10:g.100918830C>T, NC_000015.9:g.101459035C>A, NC_000015.9:g.101459035C>T, NG_052791.1:g.4814C>A, NG_052791.1:g.4814C>T, NR_135827.1:n.454G>T, NR_135827.1:n.454G>A, NR_135831.1:n.454G>T, NR_135831.1:n.454G>A, NR_135828.1:n.454G>T, NR_135828.1:n.454G>A

Select item 147882136115.

rs1478821361 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,G [Show Flanks]
Chromosome:: 15:100913463 (GRCh38)
15:101453668 (GRCh37)
Canonical SPDI:: NC_000015.10:100913462:A:C,NC_000015.10:100913462:A:G
Gene:: ALDH1A3 (Varview), ALDH1A3-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
HGVS:: NC_000015.10:g.100913463A>C, NC_000015.10:g.100913463A>G, NC_000015.9:g.101453668A>C, NC_000015.9:g.101453668A>G, NG_012254.1:g.38660A>C, NG_012254.1:g.38660A>G, NR_135831.1:n.3914T>G, NR_135831.1:n.3914T>C, NR_135828.1:n.2998T>G, NR_135828.1:n.2998T>C

Select item 147868871316.

rs1478688713 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 15:100915903 (GRCh38)
15:101456108 (GRCh37)
Canonical SPDI:: NC_000015.10:100915902:C:A
Gene:: ALDH1A3 (Varview), ALDH1A3-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,3_prime_UTR_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
A=0.000014/2 (GnomAD)
A=0.000035/1 (TOMMO)
HGVS:: NC_000015.10:g.100915903C>A, NC_000015.9:g.101456108C>A, NG_052791.1:g.1887C>A, NG_012254.1:g.41100C>A, NM_000693.4:c.*1130C>A, NM_000693.3:c.*1130C>A, NM_000693.2:c.*1130C>A, NM_001293815.2:c.*1130C>A, NM_001293815.1:c.*1130C>A, NR_135831.1:n.1474G>T, NR_135828.1:n.558G>T

Select item 147864825517.

rs1478648255 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 15:100913818 (GRCh38)
15:101454023 (GRCh37)
Canonical SPDI:: NC_000015.10:100913817:G:A
Gene:: ALDH1A3 (Varview), ALDH1A3-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.100913818G>A, NC_000015.9:g.101454023G>A, NG_012254.1:g.39015G>A, NR_135831.1:n.3559C>T, NR_135828.1:n.2643C>T

Select item 147859701818.

rs1478597018 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 15:100914953 (GRCh38)
15:101455158 (GRCh37)
Canonical SPDI:: NC_000015.10:100914952:G:A
Gene:: ALDH1A3 (Varview), ALDH1A3-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,3_prime_UTR_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.00003/8 (TOPMED)
A=0.000043/6 (GnomAD)
HGVS:: NC_000015.10:g.100914953G>A, NC_000015.9:g.101455158G>A, NG_052791.1:g.937G>A, NG_012254.1:g.40150G>A, NM_000693.4:c.*180G>A, NM_000693.3:c.*180G>A, NM_000693.2:c.*180G>A, NM_001293815.2:c.*180G>A, NM_001293815.1:c.*180G>A, NR_135831.1:n.2424C>T, NR_135828.1:n.1508C>T

Select item 147785559419.

rs1477855594 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:100919112 (GRCh38)
15:101459317 (GRCh37)
Canonical SPDI:: NC_000015.10:100919111:C:T
Gene:: LRRK1 (Varview), ALDH1A3-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000015.10:g.100919112C>T, NC_000015.9:g.101459317C>T, NG_052791.1:g.5096C>T, NR_135827.1:n.172G>A, NR_135831.1:n.172G>A, NR_135828.1:n.172G>A

Select item 147761518520.

rs1477615185 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 15:100915413 (GRCh38)
15:101455618 (GRCh37)
Canonical SPDI:: NC_000015.10:100915412:C:G,NC_000015.10:100915412:C:T
Gene:: ALDH1A3 (Varview), ALDH1A3-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,3_prime_UTR_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000015.10:g.100915413C>G, NC_000015.10:g.100915413C>T, NC_000015.9:g.101455618C>G, NC_000015.9:g.101455618C>T, NG_052791.1:g.1397C>G, NG_052791.1:g.1397C>T, NG_012254.1:g.40610C>G, NG_012254.1:g.40610C>T, NM_000693.4:c.*640C>G, NM_000693.4:c.*640C>T, NM_000693.3:c.*640C>G, NM_000693.3:c.*640C>T, NM_000693.2:c.*640C>G, NM_000693.2:c.*640C>T, NM_001293815.2:c.*640C>G, NM_001293815.2:c.*640C>T, NM_001293815.1:c.*640C>G, NM_001293815.1:c.*640C>T, NR_135831.1:n.1964G>C, NR_135831.1:n.1964G>A, NR_135828.1:n.1048G>C, NR_135828.1:n.1048G>A

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