SNP Links for Gene (Select 9629) - SNP

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Select item 14914825301.

rs1491482530 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->CG [Show Flanks]
Chromosome:: 1:86636586 (GRCh38)
1:87102270 (GRCh37)
Canonical SPDI:: NC_000001.11:86636586:G:GCG
Gene:: CLCA3P (Varview), CLCA4-AS1 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GCG=0./0 (ALFA)
GC=0.000004/1 (TOPMED)
GC=0.000031/1 (GnomAD)
HGVS:: NC_000001.11:g.86636587_86636588insCG, NC_000001.10:g.87102270_87102271insCG

Select item 14909996542.

rs1490999654 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 1:86639737 (GRCh38)
1:87105420 (GRCh37)
Canonical SPDI:: NC_000001.11:86639736:G:A,NC_000001.11:86639736:G:C
Gene:: CLCA3P (Varview), CLCA4-AS1 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.86639737G>A, NC_000001.11:g.86639737G>C, NC_000001.10:g.87105420G>A, NC_000001.10:g.87105420G>C

Select item 14909680803.

rs1490968080 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->AG [Show Flanks]
Chromosome:: 1:86634344 (GRCh38)
1:87100028 (GRCh37)
Canonical SPDI:: NC_000001.11:86634344:G:GAG
Gene:: CLCA3P (Varview), CLCA4-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by cluster
MAF:: GA=0.000064/9 (GnomAD)
HGVS:: NC_000001.11:g.86634345_86634346insAG, NC_000001.10:g.87100028_87100029insAG, NM_004921.2:c.52_53insAG, NR_024604.1:n.70_71insAG, NM_004921.1:c.52_53insAG

Select item 14908417144.

rs1490841714 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 1:86637684 (GRCh38)
1:87103367 (GRCh37)
Canonical SPDI:: NC_000001.11:86637683:A:G
Gene:: CLCA3P (Varview), CLCA4-AS1 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000014/2 (GnomAD)
G=0.000034/9 (TOPMED)
HGVS:: NC_000001.11:g.86637684A>G, NC_000001.10:g.87103367A>G

Select item 14904242145.

rs1490424214 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:86639238 (GRCh38)
1:87104921 (GRCh37)
Canonical SPDI:: NC_000001.11:86639237:T:C
Gene:: CLCA3P (Varview), CLCA4-AS1 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
C=0.000029/4 (GnomAD)
HGVS:: NC_000001.11:g.86639238T>C, NC_000001.10:g.87104921T>C

Select item 14902767766.

rs1490276776 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 1:86648000 (GRCh38)
1:87113683 (GRCh37)
Canonical SPDI:: NC_000001.11:86647999:A:G
Gene:: CLCA3P (Varview), CLCA4-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
G=0.000014/2 (GnomAD)
HGVS:: NC_000001.11:g.86648000A>G, NC_000001.10:g.87113683A>G, NG_082099.1:g.494A>G, NM_004921.2:c.*956A>G, NR_024604.1:n.1763A>G, NM_004921.1:c.*957A>G

Select item 14896622337.

rs1489662233 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:86643605 (GRCh38)
1:87109288 (GRCh37)
Canonical SPDI:: NC_000001.11:86643604:T:C
Gene:: CLCA3P (Varview), CLCA4-AS1 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000078/11 (GnomAD)
C=0.000094/25 (TOPMED)
C=0.004367/8 (Korea1K)
C=0.007529/22 (KOREAN)
C=0.011183/187 (TOMMO)
HGVS:: NC_000001.11:g.86643605T>C, NC_000001.10:g.87109288T>C

Select item 14891510358.

rs1489151035 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAT>- [Show Flanks]
Chromosome:: 1:86649655 (GRCh38)
1:87115338 (GRCh37)
Canonical SPDI:: NC_000001.11:86649652:ATAAT:AT
Gene:: CLCA3P (Varview), CLCA4-AS1 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: AT=0.000071/1 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.86649655_86649657del, NC_000001.10:g.87115338_87115340del

Select item 14891282919.

rs1489128291 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 1:86645193 (GRCh38)
1:87110876 (GRCh37)
Canonical SPDI:: NC_000001.11:86645192:T:A
Gene:: CLCA3P (Varview), CLCA4-AS1 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000019/5 (TOPMED)
A=0.000156/1 (1000Genomes)
HGVS:: NC_000001.11:g.86645193T>A, NC_000001.10:g.87110876T>A

Select item 148898190110.

rs1488981901 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 1:86632912 (GRCh38)
1:87098595 (GRCh37)
Canonical SPDI:: NC_000001.11:86632911:C:G
Gene:: CLCA3P (Varview), CLCA4-AS1 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.86632912C>G, NC_000001.10:g.87098595C>G

Select item 148892973911.

rs1488929739 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:86640795 (GRCh38)
1:87106478 (GRCh37)
Canonical SPDI:: NC_000001.11:86640794:T:C
Gene:: CLCA3P (Varview), CLCA4-AS1 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.86640795T>C, NC_000001.10:g.87106478T>C

Select item 148887911812.

rs1488879118 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:86642077 (GRCh38)
1:87107760 (GRCh37)
Canonical SPDI:: NC_000001.11:86642076:G:A
Gene:: CLCA3P (Varview), CLCA4-AS1 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000001.11:g.86642077G>A, NC_000001.10:g.87107760G>A

Select item 148867859713.

rs1488678597 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 1:86640115 (GRCh38)
1:87105798 (GRCh37)
Canonical SPDI:: NC_000001.11:86640114:A:T
Gene:: CLCA3P (Varview), CLCA4-AS1 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.86640115A>T, NC_000001.10:g.87105798A>T

Select item 148841475014.

rs1488414750 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 1:86649625 (GRCh38)
1:87115308 (GRCh37)
Canonical SPDI:: NC_000001.11:86649624:A:C
Gene:: CLCA3P (Varview), CLCA4-AS1 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000011/3 (TOPMED)
HGVS:: NC_000001.11:g.86649625A>C, NC_000001.10:g.87115308A>C

Select item 148793353815.

rs1487933538 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 1:86651821 (GRCh38)
1:87117504 (GRCh37)
Canonical SPDI:: NC_000001.11:86651820:C:G,NC_000001.11:86651820:C:T
Gene:: CLCA3P (Varview), CLCA4-AS1 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.86651821C>G, NC_000001.11:g.86651821C>T, NC_000001.10:g.87117504C>G, NC_000001.10:g.87117504C>T

Select item 148778021616.

rs1487780216 [Homo sapiens]

Variant type:: DEL
Alleles:: T>- [Show Flanks]
Chromosome:: 1:86641822 (GRCh38)
1:87107505 (GRCh37)
Canonical SPDI:: NC_000001.11:86641821:T:
Gene:: CLCA3P (Varview), CLCA4-AS1 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
HGVS:: NC_000001.11:g.86641822del, NC_000001.10:g.87107505del

Select item 148770449717.

rs1487704497 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:86636706 (GRCh38)
1:87102389 (GRCh37)
Canonical SPDI:: NC_000001.11:86636705:C:T
Gene:: CLCA3P (Varview), CLCA4-AS1 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000001.11:g.86636706C>T, NC_000001.10:g.87102389C>T

Select item 148763096518.

rs1487630965 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 1:86637860 (GRCh38)
1:87103543 (GRCh37)
Canonical SPDI:: NC_000001.11:86637859:C:A
Gene:: CLCA3P (Varview), CLCA4-AS1 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000001.11:g.86637860C>A, NC_000001.10:g.87103543C>A

Select item 148759686919.

rs1487596869 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:86654022 (GRCh38)
1:87119705 (GRCh37)
Canonical SPDI:: NC_000001.11:86654021:T:C
Gene:: CLCA3P (Varview), CLCA4-AS1 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.86654022T>C, NC_000001.10:g.87119705T>C

Select item 148754634720.

rs1487546347 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:86655255 (GRCh38)
1:87120938 (GRCh37)
Canonical SPDI:: NC_000001.11:86655254:T:C
Gene:: CLCA3P (Varview), CLCA4-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.86655255T>C, NC_000001.10:g.87120938T>C, NM_004921.2:c.*2484T>C, NR_024604.1:n.3291T>C, NM_004921.1:c.*2485T>C

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