SNP Links for Gene (Select 9576) - SNP

Links from Gene

Items: 1 to 20 of 1000

<< First< Prev

Page of 50

Next >Last >>

Select item 14915560881.

rs1491556088 [Homo sapiens]

Variant type:: DEL
Alleles:: AT>- [Show Flanks]
Chromosome:: 10:22376635 (GRCh38)
10:22665564 (GRCh37)
Canonical SPDI:: NC_000010.11:22376634:AT:
Gene:: SPAG6 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0./0 (ALSPAC)
-=0.000057/8 (GnomAD)
-=0.00027/1 (TWINSUK)
HGVS:: NC_000010.11:g.22376635_22376636del, NC_000010.10:g.22665564_22665565del

Select item 14913811172.

rs1491381117 [Homo sapiens]

Variant type:: INS
Alleles:: ->TCTTC,TCTTCTTC,TCTTCTTCTTC,TCTTCTTCTTCTTC,TCTTCTTCTTCTTCTTC,TCTTCTTCTTCTTCTTCTTC [Show Flanks]
Chromosome:: 10:22346499 (GRCh38)
10:22635429 (GRCh37)
Canonical SPDI:: NC_000010.11:22346499::TCTTC,NC_000010.11:22346499::TCTTCTTC,NC_000010.11:22346499::TCTTCTTCTTC,NC_000010.11:22346499::TCTTCTTCTTCTTC,NC_000010.11:22346499::TCTTCTTCTTCTTCTTC,NC_000010.11:22346499::TCTTCTTCTTCTTCTTCTTC
Gene:: SPAG6 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by cluster
MAF:: TCTTCTTCTTCTTC=0.00004/1 (TOMMO)
HGVS:: NC_000010.11:g.22346499_22346500insTCTTC, NC_000010.11:g.22346499_22346500insTCTTCTTC, NC_000010.11:g.22346499_22346500insTCTTCTTCTTC, NC_000010.11:g.22346499_22346500insTCTTCTTCTTCTTC, NC_000010.11:g.22346499_22346500insTCTTCTTCTTCTTCTTC, NC_000010.11:g.22346499_22346500insTCTTCTTCTTCTTCTTCTTC, NC_000010.10:g.22635428_22635429insTCTTC, NC_000010.10:g.22635428_22635429insTCTTCTTC, NC_000010.10:g.22635428_22635429insTCTTCTTCTTC, NC_000010.10:g.22635428_22635429insTCTTCTTCTTCTTC, NC_000010.10:g.22635428_22635429insTCTTCTTCTTCTTCTTC, NC_000010.10:g.22635428_22635429insTCTTCTTCTTCTTCTTCTTC

Select item 14913102633.

rs1491310263 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->CTCTTC [Show Flanks]
Chromosome:: 10:22346437 (GRCh38)
10:22635367 (GRCh37)
Canonical SPDI:: NC_000010.11:22346437:TCTTC:TCTTCCTCTTC
Gene:: SPAG6 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: TCTTCCTCTTC=0./0 (ALFA)
TCTTCC=0.000019/2 (GnomAD)
HGVS:: NC_000010.11:g.22346442_22346443insCTCTTC, NC_000010.10:g.22635371_22635372insCTCTTC

Select item 14912930074.

rs1491293007 [Homo sapiens]

Variant type:: DEL
Alleles:: TT>- [Show Flanks]
Chromosome:: 10:22346437 (GRCh38)
10:22635366 (GRCh37)
Canonical SPDI:: NC_000010.11:22346436:TT:
Gene:: SPAG6 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by cluster
MAF:: -=0.000536/56 (GnomAD)
HGVS:: NC_000010.11:g.22346437_22346438del, NC_000010.10:g.22635366_22635367del

Select item 14912331855.

rs1491233185 [Homo sapiens]

Variant type:: DELINS
Alleles:: CT>- [Show Flanks]
Chromosome:: 10:22346500 (GRCh38)
10:22635429 (GRCh37)
Canonical SPDI:: NC_000010.11:22346498:TCT:T
Gene:: SPAG6 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000010.11:g.22346500_22346501del, NC_000010.10:g.22635429_22635430del

Select item 14910010036.

rs1491001003 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 10:22361581 (GRCh38)
10:22650510 (GRCh37)
Canonical SPDI:: NC_000010.11:22361580:A:G
Gene:: SPAG6 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000010.11:g.22361581A>G, NC_000010.10:g.22650510A>G

Select item 14909617827.

rs1490961782 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 10:22378391 (GRCh38)
10:22667320 (GRCh37)
Canonical SPDI:: NC_000010.11:22378390:A:G
Gene:: SPAG6 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000224/1 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000223/1 (Estonian)
HGVS:: NC_000010.11:g.22378391A>G, NC_000010.10:g.22667320A>G

Select item 14909517448.

rs1490951744 [Homo sapiens]

Variant type:: DELINS
Alleles:: CTTCTTCTTCTTCTTCTTCT>- [Show Flanks]
Chromosome:: 10:22346472 (GRCh38)
10:22635401 (GRCh37)
Canonical SPDI:: NC_000010.11:22346470:TCTTCTTCTTCTTCTTCTTCT:T
Gene:: SPAG6 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
-=0.000008/1 (GnomAD)
HGVS:: NC_000010.11:g.22346472_22346491del, NC_000010.10:g.22635401_22635420del

Select item 14908625559.

rs1490862555 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 10:22362448 (GRCh38)
10:22651377 (GRCh37)
Canonical SPDI:: NC_000010.11:22362447:A:G
Gene:: SPAG6 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000011/3 (TOPMED)
G=0.000014/2 (GnomAD)
G=0.000156/1 (1000Genomes)
HGVS:: NC_000010.11:g.22362448A>G, NC_000010.10:g.22651377A>G

Select item 149085030610.

rs1490850306 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 10:22378965 (GRCh38)
10:22667894 (GRCh37)
Canonical SPDI:: NC_000010.11:22378964:A:C
Gene:: SPAG6 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000014/2 (GnomAD)
C=0.000019/5 (TOPMED)
HGVS:: NC_000010.11:g.22378965A>C, NC_000010.10:g.22667894A>C

Select item 149075818711.

rs1490758187 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 10:22358112 (GRCh38)
10:22647041 (GRCh37)
Canonical SPDI:: NC_000010.11:22358111:G:A
Gene:: SPAG6 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000019/5 (TOPMED)
A=0.000156/1 (1000Genomes)
A=0.000814/14 (TOMMO)
A=0.001369/4 (KOREAN)
A=0.002183/4 (Korea1K)
HGVS:: NC_000010.11:g.22358112G>A, NC_000010.10:g.22647041G>A

Select item 149073998212.

rs1490739982 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C,T [Show Flanks]
Chromosome:: 10:22405779 (GRCh38)
10:22694708 (GRCh37)
Canonical SPDI:: NC_000010.11:22405778:G:C,NC_000010.11:22405778:G:T
Gene:: SPAG6 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.22405779G>C, NC_000010.11:g.22405779G>T, NC_000010.10:g.22694708G>C, NC_000010.10:g.22694708G>T

Select item 149073046913.

rs1490730469 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 10:22345705 (GRCh38)
10:22634634 (GRCh37)
Canonical SPDI:: NC_000010.11:22345704:C:T
Gene:: SPAG6 (Varview)
Functional Consequence:: 5_prime_UTR_variant,intron_variant
Validated:: by frequency
MAF:: T=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000010.11:g.22345705C>T, NC_000010.10:g.22634634C>T, NM_001253855.2:c.-59C>T, NM_001253855.1:c.-59C>T

Select item 149069410014.

rs1490694100 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 10:22404894 (GRCh38)
10:22693823 (GRCh37)
Canonical SPDI:: NC_000010.11:22404893:T:G
Gene:: SPAG6 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
HGVS:: NC_000010.11:g.22404894T>G, NC_000010.10:g.22693823T>G

Select item 149064463815.

rs1490644638 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 10:22387930 (GRCh38)
10:22676859 (GRCh37)
Canonical SPDI:: NC_000010.11:22387929:C:T
Gene:: SPAG6 (Varview)
Functional Consequence:: synonymous_variant,coding_sequence_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000010.11:g.22387930C>T, NC_000010.10:g.22676859C>T, NM_012443.4:c.786C>T, NM_012443.3:c.786C>T, NM_172242.3:c.786C>T, NM_172242.2:c.786C>T, NM_001253854.2:c.711C>T, NM_001253854.1:c.711C>T, NM_001253855.2:c.720C>T, NM_001253855.1:c.720C>T

Select item 149064106016.

rs1490641060 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 10:22400108 (GRCh38)
10:22689037 (GRCh37)
Canonical SPDI:: NC_000010.11:22400107:A:G
Gene:: SPAG6 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000447/2 (ALFA)
G=0.000014/2 (GnomAD)
G=0.000446/2 (Estonian)
HGVS:: NC_000010.11:g.22400108A>G, NC_000010.10:g.22689037A>G

Select item 149059980317.

rs1490599803 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: 10:22355495 (GRCh38)
10:22644424 (GRCh37)
Canonical SPDI:: NC_000010.11:22355494:T:C,NC_000010.11:22355494:T:G
Gene:: SPAG6 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
C=0.000014/2 (GnomAD)
HGVS:: NC_000010.11:g.22355495T>C, NC_000010.11:g.22355495T>G, NC_000010.10:g.22644424T>C, NC_000010.10:g.22644424T>G

Select item 149053890618.

rs1490538906 [Homo sapiens]

Variant type:: DELINS
Alleles:: CAGAGTAAGTGA>- [Show Flanks]
Chromosome:: 10:22361667 (GRCh38)
10:22650596 (GRCh37)
Canonical SPDI:: NC_000010.11:22361662:GTGACAGAGTAAGTGA:GTGA
Gene:: SPAG6 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GTGA=0.000071/1 (ALFA)
-=0.000007/1 (GnomAD)
-=0.000023/6 (TOPMED)
HGVS:: NC_000010.11:g.22361667_22361678del, NC_000010.10:g.22650596_22650607del

Select item 149050656819.

rs1490506568 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 10:22397856 (GRCh38)
10:22686785 (GRCh37)
Canonical SPDI:: NC_000010.11:22397855:A:G
Gene:: SPAG6 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000019/5 (TOPMED)
G=0.000029/4 (GnomAD)
HGVS:: NC_000010.11:g.22397856A>G, NC_000010.10:g.22686785A>G

Select item 149038675420.

rs1490386754 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 10:22416316 (GRCh38)
10:22705245 (GRCh37)
Canonical SPDI:: NC_000010.11:22416315:G:C
Gene:: SPAG6 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000010.11:g.22416316G>C, NC_000010.10:g.22705245G>C

dbSNP

Result Filters

Validation Status

Function Class

Variation Class

Annotation

Global MAF

Custom range

Additional filters

Display Settings:

Send to:

Links from Gene

Items: 1 to 20 of 1000

Display Settings:

Send to:

Supplemental Content

Find related data

Recent activity