SNP Links for Gene (Select 9506) - SNP

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Select item 14909957021.

rs1490995702 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: X:49832231 (GRCh38)
X:49596834 (GRCh37)
Canonical SPDI:: NC_000023.11:49832230:C:T
Gene:: PAGE4 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.00001/1 (GnomAD)
T=0.000023/6 (TOPMED)
HGVS:: NC_000023.11:g.49832231C>T, NC_000023.10:g.49596834C>T, NW_004070880.2:g.2021660C>T

Select item 14906985132.

rs1490698513 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: X:49833828 (GRCh38)
X:49598431 (GRCh37)
Canonical SPDI:: NC_000023.11:49833827:G:C
Gene:: PAGE4 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000011/3 (TOPMED)
C=0.000019/2 (GnomAD)
HGVS:: NC_000023.11:g.49833828G>C, NC_000023.10:g.49598431G>C, NW_004070880.2:g.2023257G>C

Select item 14905180113.

rs1490518011 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: X:49833190 (GRCh38)
X:49597793 (GRCh37)
Canonical SPDI:: NC_000023.11:49833189:T:C
Gene:: PAGE4 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000015/4 (TOPMED)
C=0.000019/2 (GnomAD)
HGVS:: NC_000023.11:g.49833190T>C, NC_000023.10:g.49597793T>C, NW_004070880.2:g.2022619T>C

Select item 14902075014.

rs1490207501 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: X:49834655 (GRCh38)
X:49599258 (GRCh37)
Canonical SPDI:: NC_000023.11:49834654:G:A
Gene:: PAGE4 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000072/19 (TOPMED)
HGVS:: NC_000023.11:g.49834655G>A, NC_000023.10:g.49599258G>A, NW_004070880.2:g.2024084G>A

Select item 14896846325.

rs1489684632 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: X:49830661 (GRCh38)
X:49595264 (GRCh37)
Canonical SPDI:: NC_000023.11:49830660:G:T
Gene:: PAGE4 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000023.11:g.49830661G>T, NC_000023.10:g.49595264G>T, NW_004070880.2:g.2020090G>T

Select item 14862144236.

rs1486214423 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: X:49827625 (GRCh38)
X:49592228 (GRCh37)
Canonical SPDI:: NC_000023.11:49827624:C:A
Gene:: PAGE4 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000019/5 (TOPMED)
A=0.000029/3 (GnomAD)
HGVS:: NC_000023.11:g.49827625C>A, NC_000023.10:g.49592228C>A, NW_004070880.2:g.2017054C>A

Select item 14855616607.

rs1485561660 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,T [Show Flanks]
Chromosome:: X:49829158 (GRCh38)
X:49593761 (GRCh37)
Canonical SPDI:: NC_000023.11:49829157:A:C,NC_000023.11:49829157:A:T
Gene:: PAGE4 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000023.11:g.49829158A>C, NC_000023.11:g.49829158A>T, NC_000023.10:g.49593761A>C, NC_000023.10:g.49593761A>T, NW_004070880.2:g.2018587A>C, NW_004070880.2:g.2018587A>T

Select item 14840454118.

rs1484045411 [Homo sapiens]

Variant type:: DELINS
Alleles:: T>-,TT [Show Flanks]
Chromosome:: X:49831597 (GRCh38)
X:49596200 (GRCh37)
Canonical SPDI:: NC_000023.11:49831596:TTTTTT:TTTTT,NC_000023.11:49831596:TTTTTT:TTTTTTT
Gene:: PAGE4 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTT=0./0 (ALFA)
-=0.000029/3 (GnomAD)
HGVS:: NC_000023.11:g.49831602del, NC_000023.11:g.49831602dup, NC_000023.10:g.49596205del, NC_000023.10:g.49596205dup, NW_004070880.2:g.2021031del, NW_004070880.2:g.2021031dup

Select item 14834110409.

rs1483411040 [Homo sapiens]

Variant type:: DELINS
Alleles:: A>- [Show Flanks]
Chromosome:: X:49830957 (GRCh38)
X:49595560 (GRCh37)
Canonical SPDI:: NC_000023.11:49830956:AA:A
Gene:: PAGE4 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AA=0./0 (ALFA)
-=0.000009/1 (GnomAD_exomes)
-=0.000019/2 (GnomAD)
-=0.000034/9 (TOPMED)
HGVS:: NC_000023.11:g.49830958del, NC_000023.10:g.49595561del, NW_004070880.2:g.2020387del

Select item 148338043510.

rs1483380435 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: X:49830114 (GRCh38)
X:49594717 (GRCh37)
Canonical SPDI:: NC_000023.11:49830113:G:A
Gene:: PAGE4 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000126/13 (GnomAD)
A=0.000185/49 (TOPMED)
A=0.020833/1 (Vietnamese)
HGVS:: NC_000023.11:g.49830114G>A, NC_000023.10:g.49594717G>A, NW_004070880.2:g.2019543G>A

Select item 148274573311.

rs1482745733 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: X:49832435 (GRCh38)
X:49597038 (GRCh37)
Canonical SPDI:: NC_000023.11:49832434:G:A
Gene:: PAGE4 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000023.11:g.49832435G>A, NC_000023.10:g.49597038G>A, NW_004070880.2:g.2021864G>A

Select item 148272557212.

rs1482725572 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: X:49831464 (GRCh38)
X:49596067 (GRCh37)
Canonical SPDI:: NC_000023.11:49831463:G:A
Gene:: PAGE4 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000023.11:g.49831464G>A, NC_000023.10:g.49596067G>A, NW_004070880.2:g.2020893G>A

Select item 148228159913.

rs1482281599 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: X:49830295 (GRCh38)
X:49594898 (GRCh37)
Canonical SPDI:: NC_000023.11:49830294:T:C
Gene:: PAGE4 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0.000071/1 (ALFA)
C=0.000011/3 (TOPMED)
HGVS:: NC_000023.11:g.49830295T>C, NC_000023.10:g.49594898T>C, NW_004070880.2:g.2019724T>C

Select item 148163800814.

rs1481638008 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: X:49832366 (GRCh38)
X:49596969 (GRCh37)
Canonical SPDI:: NC_000023.11:49832365:T:C,NC_000023.11:49832365:T:G
Gene:: PAGE4 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.00001/1 (GnomAD)
G=0.000023/6 (TOPMED)
HGVS:: NC_000023.11:g.49832366T>C, NC_000023.11:g.49832366T>G, NC_000023.10:g.49596969T>C, NC_000023.10:g.49596969T>G, NW_004070880.2:g.2021795T>C, NW_004070880.2:g.2021795T>G

Select item 148112374515.

rs1481123745 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: X:49833982 (GRCh38)
X:49598585 (GRCh37)
Canonical SPDI:: NC_000023.11:49833981:T:C,NC_000023.11:49833981:T:G
Gene:: PAGE4 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000023.11:g.49833982T>C, NC_000023.11:g.49833982T>G, NC_000023.10:g.49598585T>C, NC_000023.10:g.49598585T>G, NW_004070880.2:g.2023411T>C, NW_004070880.2:g.2023411T>G, NM_007003.4:c.*120T>C, NM_007003.4:c.*120T>G, NM_007003.3:c.*120T>C, NM_007003.3:c.*120T>G, XM_047442678.1:c.*120T>C, XM_047442678.1:c.*120T>G, NM_001318877.1:c.*120T>C, NM_001318877.1:c.*120T>G

Select item 148011282516.

rs1480112825 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: X:49828804 (GRCh38)
X:49593407 (GRCh37)
Canonical SPDI:: NC_000023.11:49828803:A:G
Gene:: PAGE4 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000023.11:g.49828804A>G, NC_000023.10:g.49593407A>G, NW_004070880.2:g.2018233A>G

Select item 147993043317.

rs1479930433 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: X:49829480 (GRCh38)
X:49594083 (GRCh37)
Canonical SPDI:: NC_000023.11:49829479:G:A
Gene:: PAGE4 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.00001/1 (GnomAD)
A=0.000011/3 (TOPMED)
HGVS:: NC_000023.11:g.49829480G>A, NC_000023.10:g.49594083G>A, NW_004070880.2:g.2018909G>A

Select item 147948027618.

rs1479480276 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: X:49834018 (GRCh38)
X:49598621 (GRCh37)
Canonical SPDI:: NC_000023.11:49834017:G:A
Gene:: PAGE4 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000023.11:g.49834018G>A, NC_000023.10:g.49598621G>A, NW_004070880.2:g.2023447G>A, NM_007003.4:c.*156G>A, NM_007003.3:c.*156G>A, XM_047442678.1:c.*156G>A, NM_001318877.1:c.*156G>A

Select item 147911230719.

rs1479112307 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: X:49829568 (GRCh38)
X:49594171 (GRCh37)
Canonical SPDI:: NC_000023.11:49829567:C:A
Gene:: PAGE4 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000011/3 (TOPMED)
HGVS:: NC_000023.11:g.49829568C>A, NC_000023.10:g.49594171C>A, NW_004070880.2:g.2018997C>A

Select item 147693339620.

rs1476933396 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: X:49833180 (GRCh38)
X:49597783 (GRCh37)
Canonical SPDI:: NC_000023.11:49833179:C:T
Gene:: PAGE4 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000038/10 (TOPMED)
T=0.000058/6 (GnomAD)
HGVS:: NC_000023.11:g.49833180C>T, NC_000023.10:g.49597783C>T, NW_004070880.2:g.2022609C>T

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