Links from Gene
Items: 1 to 20 of 785
1.
rs1490954400 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- C>T
[Show Flanks]
- Chromosome:
- 17:42121889
(GRCh38)
17:40273907
(GRCh37)
- Canonical SPDI:
- NC_000017.11:42121888:C:T
- Gene:
- KAT2A (Varview), HSPB9 (Varview)
- Functional Consequence:
- 2KB_upstream_variant,upstream_transcript_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
T=0./0
(
ALFA)
T=0.000004/1
(TOPMED)
T=0.000007/1
(GnomAD)
- HGVS:
2.
rs1490138342 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- C>G
[Show Flanks]
- Chromosome:
- 17:42121433
(GRCh38)
17:40273451
(GRCh37)
- Canonical SPDI:
- NC_000017.11:42121432:C:G
- Gene:
- KAT2A (Varview), HSPB9 (Varview)
- Functional Consequence:
- 2KB_upstream_variant,upstream_transcript_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
G=0.000142/2
(
ALFA)
G=0.000053/14
(TOPMED)
G=0.000071/10
(GnomAD)
- HGVS:
3.
rs1489979445 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- CCT>-
[Show Flanks]
- Chromosome:
- 17:42121108
(GRCh38)
17:40273126
(GRCh37)
- Canonical SPDI:
- NC_000017.11:42121106:TCCT:T
- Gene:
- KAT2A (Varview), HSPB9 (Varview)
- Functional Consequence:
- coding_sequence_variant,inframe_deletion,2KB_upstream_variant,genic_upstream_transcript_variant,upstream_transcript_variant
- Validated:
- by frequency,by alfa
- MAF:
T=0./0
(
ALFA)
-=0.000011/3
(TOPMED)
- HGVS:
4.
rs1488822073 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- G>A,C
[Show Flanks]
- Chromosome:
- 17:42123293
(GRCh38)
17:40275311
(GRCh37)
- Canonical SPDI:
- NC_000017.11:42123292:G:A,NC_000017.11:42123292:G:C
- Gene:
- KAT2A (Varview), HSPB9 (Varview)
- Functional Consequence:
- coding_sequence_variant,2KB_upstream_variant,upstream_transcript_variant,missense_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
C=0./0
(
ALFA)
C=0.000004/1
(TOPMED)
C=0.000007/1
(GnomAD)
- HGVS:
NC_000017.11:g.42123293G>A, NC_000017.11:g.42123293G>C, NC_000017.10:g.40275311G>A, NC_000017.10:g.40275311G>C, NW_003571052.1:g.409935G>A, NW_003571052.1:g.409935G>C, NM_033194.3:c.443G>A, NM_033194.3:c.443G>C, NM_033194.2:c.443G>A, NM_033194.2:c.443G>C, NP_149971.1:p.Gly148Glu, NP_149971.1:p.Gly148Ala
5.
rs1487266240 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- C>A
[Show Flanks]
- Chromosome:
- 17:42121935
(GRCh38)
17:40273953
(GRCh37)
- Canonical SPDI:
- NC_000017.11:42121934:C:A
- Gene:
- KAT2A (Varview), HSPB9 (Varview)
- Functional Consequence:
- 2KB_upstream_variant,upstream_transcript_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
A=0./0
(
ALFA)
A=0.000008/2
(TOPMED)
A=0.000014/2
(GnomAD)
- HGVS:
6.
rs1486918080 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- A>T
[Show Flanks]
- Chromosome:
- 17:42122375
(GRCh38)
17:40274393
(GRCh37)
- Canonical SPDI:
- NC_000017.11:42122374:A:T
- Gene:
- KAT2A (Varview), HSPB9 (Varview)
- Functional Consequence:
- 2KB_upstream_variant,upstream_transcript_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
T=0./0
(
ALFA)
T=0.000004/1
(TOPMED)
T=0.000007/1
(GnomAD)
- HGVS:
8.
rs1485511760 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- G>A
[Show Flanks]
- Chromosome:
- 17:42123771
(GRCh38)
17:40275789
(GRCh37)
- Canonical SPDI:
- NC_000017.11:42123770:G:A
- Gene:
- HSPB9 (Varview)
- Functional Consequence:
- downstream_transcript_variant,500B_downstream_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
A=0.000084/1
(
ALFA)
A=0.000008/2
(TOPMED)
A=0.000014/2
(GnomAD)
- HGVS:
9.
rs1485300916 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- C>G
[Show Flanks]
- Chromosome:
- 17:42121245
(GRCh38)
17:40273263
(GRCh37)
- Canonical SPDI:
- NC_000017.11:42121244:C:G
- Gene:
- KAT2A (Varview), HSPB9 (Varview)
- Functional Consequence:
- coding_sequence_variant,2KB_upstream_variant,genic_upstream_transcript_variant,missense_variant,upstream_transcript_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
G=0./0
(
ALFA)
G=0.000004/1
(TOPMED)
G=0.000007/1
(GnomAD)
- HGVS:
11.
rs1483539733 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- G>C
[Show Flanks]
- Chromosome:
- 17:42123067
(GRCh38)
17:40275085
(GRCh37)
- Canonical SPDI:
- NC_000017.11:42123066:G:C
- Gene:
- KAT2A (Varview), HSPB9 (Varview)
- Functional Consequence:
- coding_sequence_variant,2KB_upstream_variant,upstream_transcript_variant,missense_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
C=0./0
(
ALFA)
C=0.000007/1
(GnomAD)
C=0.000008/2
(TOPMED)
- HGVS:
12.
rs1483429032 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- A>G
[Show Flanks]
- Chromosome:
- 17:42123827
(GRCh38)
17:40275845
(GRCh37)
- Canonical SPDI:
- NC_000017.11:42123826:A:G
- Gene:
- HSPB9 (Varview)
- Functional Consequence:
- downstream_transcript_variant,500B_downstream_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
G=0.000422/5
(
ALFA)
G=0.000207/28
(GnomAD)
G=0.000625/4
(1000Genomes)
- HGVS:
14.
rs1481593342 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- G>C
[Show Flanks]
- Chromosome:
- 17:42122132
(GRCh38)
17:40274150
(GRCh37)
- Canonical SPDI:
- NC_000017.11:42122131:G:C
- Gene:
- KAT2A (Varview), HSPB9 (Varview)
- Functional Consequence:
- 2KB_upstream_variant,upstream_transcript_variant
- Validated:
- by frequency,by alfa
- MAF:
C=0./0
(
ALFA)
C=0.000004/1
(TOPMED)
- HGVS:
15.
rs1481537503 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- C>T
[Show Flanks]
- Chromosome:
- 17:42121311
(GRCh38)
17:40273329
(GRCh37)
- Canonical SPDI:
- NC_000017.11:42121310:C:T
- Gene:
- KAT2A (Varview), HSPB9 (Varview)
- Functional Consequence:
- 5_prime_UTR_variant,2KB_upstream_variant,genic_upstream_transcript_variant,upstream_transcript_variant
- Validated:
- by frequency,by alfa
- MAF:
T=0./0
(
ALFA)
T=0.000011/3
(TOPMED)
- HGVS:
16.
rs1480086325 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- C>T
[Show Flanks]
- Chromosome:
- 17:42121525
(GRCh38)
17:40273543
(GRCh37)
- Canonical SPDI:
- NC_000017.11:42121524:C:T
- Gene:
- KAT2A (Varview), HSPB9 (Varview)
- Functional Consequence:
- 2KB_upstream_variant,upstream_transcript_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
T=0./0
(
ALFA)
T=0.000011/3
(TOPMED)
T=0.000014/2
(GnomAD)
- HGVS:
17.
rs1478807395 has merged into rs869184484 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- AAAAAAAAAAAAAAAAAAA>-,A,AA,AAA,AAAA,AAAAA,AAAAAA,AAAAAAA,AAAAAAAA,AAAAAAAAA,AAAAAAAAAA,AAAAAAAAAAA,AAAAAAAAAAAA,AAAAAAAAAAAAA,AAAAAAAAAAAAAA,AAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAAA
[Show Flanks]
- Chromosome:
- 17:42123707
(GRCh38)
17:40275725
(GRCh37)
- Canonical SPDI:
- NC_000017.11:42123695:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAA,NC_000017.11:42123695:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000017.11:42123695:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000017.11:42123695:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000017.11:42123695:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000017.11:42123695:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000017.11:42123695:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000017.11:42123695:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA,NC_000017.11:42123695:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA,NC_000017.11:42123695:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA,NC_000017.11:42123695:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAA,NC_000017.11:42123695:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAA,NC_000017.11:42123695:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAA,NC_000017.11:42123695:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAA,NC_000017.11:42123695:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAA,NC_000017.11:42123695:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000017.11:42123695:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000017.11:42123695:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000017.11:42123695:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000017.11:42123695:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000017.11:42123695:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000017.11:42123695:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000017.11:42123695:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000017.11:42123695:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000017.11:42123695:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000017.11:42123695:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000017.11:42123695:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000017.11:42123695:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
- Gene:
- HSPB9 (Varview)
- Functional Consequence:
- downstream_transcript_variant,500B_downstream_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
AAAAAAAAAAA=0./0
(
ALFA)
-=0.0039/2
(NorthernSweden)
- HGVS:
NC_000017.11:g.42123707_42123725del, NC_000017.11:g.42123708_42123725del, NC_000017.11:g.42123709_42123725del, NC_000017.11:g.42123710_42123725del, NC_000017.11:g.42123711_42123725del, NC_000017.11:g.42123712_42123725del, NC_000017.11:g.42123713_42123725del, NC_000017.11:g.42123714_42123725del, NC_000017.11:g.42123715_42123725del, NC_000017.11:g.42123716_42123725del, NC_000017.11:g.42123717_42123725del, NC_000017.11:g.42123718_42123725del, NC_000017.11:g.42123719_42123725del, NC_000017.11:g.42123720_42123725del, NC_000017.11:g.42123721_42123725del, NC_000017.11:g.42123722_42123725del, NC_000017.11:g.42123723_42123725del, NC_000017.11:g.42123724_42123725del, NC_000017.11:g.42123725del, NC_000017.11:g.42123725dup, NC_000017.11:g.42123724_42123725dup, NC_000017.11:g.42123723_42123725dup, NC_000017.11:g.42123722_42123725dup, NC_000017.11:g.42123721_42123725dup, NC_000017.11:g.42123720_42123725dup, NC_000017.11:g.42123719_42123725dup, NC_000017.11:g.42123718_42123725dup, NC_000017.11:g.42123717_42123725dup, NC_000017.10:g.40275725_40275743del, NC_000017.10:g.40275726_40275743del, NC_000017.10:g.40275727_40275743del, NC_000017.10:g.40275728_40275743del, NC_000017.10:g.40275729_40275743del, NC_000017.10:g.40275730_40275743del, NC_000017.10:g.40275731_40275743del, NC_000017.10:g.40275732_40275743del, NC_000017.10:g.40275733_40275743del, NC_000017.10:g.40275734_40275743del, NC_000017.10:g.40275735_40275743del, NC_000017.10:g.40275736_40275743del, NC_000017.10:g.40275737_40275743del, NC_000017.10:g.40275738_40275743del, NC_000017.10:g.40275739_40275743del, NC_000017.10:g.40275740_40275743del, NC_000017.10:g.40275741_40275743del, NC_000017.10:g.40275742_40275743del, NC_000017.10:g.40275743del, NC_000017.10:g.40275743dup, NC_000017.10:g.40275742_40275743dup, NC_000017.10:g.40275741_40275743dup, NC_000017.10:g.40275740_40275743dup, NC_000017.10:g.40275739_40275743dup, NC_000017.10:g.40275738_40275743dup, NC_000017.10:g.40275737_40275743dup, NC_000017.10:g.40275736_40275743dup, NC_000017.10:g.40275735_40275743dup, NW_003571052.1:g.410349_410367del, NW_003571052.1:g.410350_410367del, NW_003571052.1:g.410351_410367del, NW_003571052.1:g.410352_410367del, NW_003571052.1:g.410353_410367del, NW_003571052.1:g.410354_410367del, NW_003571052.1:g.410355_410367del, NW_003571052.1:g.410356_410367del, NW_003571052.1:g.410357_410367del, NW_003571052.1:g.410358_410367del, NW_003571052.1:g.410359_410367del, NW_003571052.1:g.410360_410367del, NW_003571052.1:g.410361_410367del, NW_003571052.1:g.410362_410367del, NW_003571052.1:g.410363_410367del, NW_003571052.1:g.410364_410367del, NW_003571052.1:g.410365_410367del, NW_003571052.1:g.410366_410367del, NW_003571052.1:g.410367del, NW_003571052.1:g.410367dup, NW_003571052.1:g.410366_410367dup, NW_003571052.1:g.410365_410367dup, NW_003571052.1:g.410364_410367dup, NW_003571052.1:g.410363_410367dup, NW_003571052.1:g.410362_410367dup, NW_003571052.1:g.410361_410367dup, NW_003571052.1:g.410360_410367dup, NW_003571052.1:g.410359_410367dup
18.
rs1477598558 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- C>T
[Show Flanks]
- Chromosome:
- 17:42122473
(GRCh38)
17:40274491
(GRCh37)
- Canonical SPDI:
- NC_000017.11:42122472:C:T
- Gene:
- KAT2A (Varview), HSPB9 (Varview)
- Functional Consequence:
- 2KB_upstream_variant,upstream_transcript_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
T=0.000071/1
(
ALFA)
T=0.000014/2
(GnomAD)
- HGVS:
19.
rs1475656907 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- C>T
[Show Flanks]
- Chromosome:
- 17:42121646
(GRCh38)
17:40273664
(GRCh37)
- Canonical SPDI:
- NC_000017.11:42121645:C:T
- Gene:
- KAT2A (Varview), HSPB9 (Varview)
- Functional Consequence:
- 2KB_upstream_variant,upstream_transcript_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
T=0./0
(
ALFA)
T=0.000049/13
(TOPMED)
T=0.000057/8
(GnomAD)
- HGVS:
20.
rs1475171395 [Homo sapiens]- Variant type:
- DEL
- Alleles:
- CAAAAAAAA>-
[Show Flanks]
- Chromosome:
- 17:42123695
(GRCh38)
17:40275713
(GRCh37)
- Canonical SPDI:
- NC_000017.11:42123694:CAAAAAAAA:
- Gene:
- HSPB9 (Varview)
- Functional Consequence:
- downstream_transcript_variant,500B_downstream_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
-=0.00363/43
(
ALFA)
-=0.00058/16
(GnomAD)
-=0.00105/25
(TOMMO)
- HGVS: