SNP Links for Gene (Select 9383) - SNP

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Select item 14915351391.

rs1491535139 [Homo sapiens]

Variant type:: DELINS
Alleles:: GA>- [Show Flanks]
Chromosome:: X:73820805 (GRCh38)
X:73040640 (GRCh37)
Canonical SPDI:: NC_000023.11:73820801:AGAGA:AGA
Gene:: XIST (Varview), TSIX (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AGA=0./0 (ALFA)
-=0.000006/1 (GnomAD_exomes)
-=0.000008/2 (TOPMED)
HGVS:: NC_000023.11:g.73820803GA[1], NC_000023.10:g.73040638GA[1], NG_016172.1:g.36949CT[1], NR_001564.2:n.19126CT[1], NR_003255.2:n.28599GA[1]

Select item 14914432842.

rs1491443284 [Homo sapiens]

Variant type:: DELINS
Alleles:: TT>- [Show Flanks]
Chromosome:: X:73792681 (GRCh38)
X:73012516 (GRCh37)
Canonical SPDI:: NC_000023.11:73792678:TTTT:TT
Gene:: TSIX (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTT=0./0 (ALFA)
-=0.00009/1 (TOMMO)
-=0.00021/1 (1000Genomes)
HGVS:: NC_000023.11:g.73792681_73792682del, NC_000023.10:g.73012516_73012517del, NR_003255.2:n.477_478del

Select item 14911098653.

rs1491109865 [Homo sapiens]

Variant type:: INS
Alleles:: ->T [Show Flanks]
Chromosome:: X:73820802 (GRCh38)
X:73040638 (GRCh37)
Canonical SPDI:: NC_000023.11:73820802::T
Gene:: XIST (Varview), TSIX (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency
MAF:: T=0.000006/1 (GnomAD_exomes)
HGVS:: NC_000023.11:g.73820802_73820803insT, NC_000023.10:g.73040637_73040638insT, NG_016172.1:g.36951_36952insA, NR_001564.2:n.19128_19129insA, NR_003255.2:n.28598_28599insT

Select item 14909757874.

rs1490975787 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: X:73817106 (GRCh38)
X:73036941 (GRCh37)
Canonical SPDI:: NC_000023.11:73817105:G:A
Gene:: TSIX (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0.000142/2 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000023.11:g.73817106G>A, NC_000023.10:g.73036941G>A, NR_003255.2:n.24902G>A

Select item 14906844765.

rs1490684476 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: X:73818630 (GRCh38)
X:73038465 (GRCh37)
Canonical SPDI:: NC_000023.11:73818629:G:A,NC_000023.11:73818629:G:T
Gene:: TSIX (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0.000019/2 (GnomAD)
HGVS:: NC_000023.11:g.73818630G>A, NC_000023.11:g.73818630G>T, NC_000023.10:g.73038465G>A, NC_000023.10:g.73038465G>T, NR_003255.2:n.26426G>A, NR_003255.2:n.26426G>T

Select item 14905979376.

rs1490597937 [Homo sapiens]

Variant type:: DEL
Alleles:: G>- [Show Flanks]
Chromosome:: X:73790724 (GRCh38)
X:73010559 (GRCh37)
Canonical SPDI:: NC_000023.11:73790723:G:
Gene:: TSIX (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0.000071/1 (ALFA)
-=0.000029/3 (GnomAD)
-=0.000034/9 (TOPMED)
HGVS:: NC_000023.11:g.73790724del, NC_000023.10:g.73010559del

Select item 14905206047.

rs1490520604 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->C [Show Flanks]
Chromosome:: X:73817721 (GRCh38)
X:73037557 (GRCh37)
Canonical SPDI:: NC_000023.11:73817721:C:CC
Gene:: TSIX (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: CC=0./0 (ALFA)
C=0.00002/2 (GnomAD)
HGVS:: NC_000023.11:g.73817722dup, NC_000023.10:g.73037557dup, NR_003255.2:n.25518dup

Select item 14904681088.

rs1490468108 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: X:73807716 (GRCh38)
X:73027551 (GRCh37)
Canonical SPDI:: NC_000023.11:73807715:A:C
Gene:: TSIX (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000011/3 (TOPMED)
C=0.000019/2 (GnomAD)
HGVS:: NC_000023.11:g.73807716A>C, NC_000023.10:g.73027551A>C, NR_003255.2:n.15512A>C

Select item 14904355939.

rs1490435593 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: X:73827728 (GRCh38)
X:73047563 (GRCh37)
Canonical SPDI:: NC_000023.11:73827727:T:C
Gene:: XIST (Varview), TSIX (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000023.11:g.73827728T>C, NC_000023.10:g.73047563T>C, NG_016172.1:g.30026A>G, NR_001564.2:n.12203A>G, NR_003255.2:n.35524T>C

Select item 149041803210.

rs1490418032 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: X:73806568 (GRCh38)
X:73026403 (GRCh37)
Canonical SPDI:: NC_000023.11:73806567:T:A
Gene:: TSIX (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000023.11:g.73806568T>A, NC_000023.10:g.73026403T>A, NR_003255.2:n.14364T>A

Select item 149030905511.

rs1490309055 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: X:73807187 (GRCh38)
X:73027022 (GRCh37)
Canonical SPDI:: NC_000023.11:73807186:A:G
Gene:: TSIX (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.00001/1 (GnomAD)
HGVS:: NC_000023.11:g.73807187A>G, NC_000023.10:g.73027022A>G, NR_003255.2:n.14983A>G

Select item 149030757512.

rs1490307575 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: X:73828581 (GRCh38)
X:73048416 (GRCh37)
Canonical SPDI:: NC_000023.11:73828580:G:C
Gene:: XIST (Varview), TSIX (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
C=0.00001/1 (GnomAD)
HGVS:: NC_000023.11:g.73828581G>C, NC_000023.10:g.73048416G>C, NG_016172.1:g.29173C>G, NR_003255.2:n.36377G>C

Select item 149027488913.

rs1490274889 [Homo sapiens]

Variant type:: DELINS
Alleles:: ATCT>- [Show Flanks]
Chromosome:: X:73827024 (GRCh38)
X:73046859 (GRCh37)
Canonical SPDI:: NC_000023.11:73827016:TCTATCTATCT:TCTATCT
Gene:: XIST (Varview), TSIX (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: TCTATCT=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000023.11:g.73827020ATCT[1], NC_000023.10:g.73046855ATCT[1], NG_016172.1:g.30730TAGA[1], NR_001564.2:n.12907TAGA[1], NR_003255.2:n.34816ATCT[1]

Select item 149025727514.

rs1490257275 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: X:73806071 (GRCh38)
X:73025906 (GRCh37)
Canonical SPDI:: NC_000023.11:73806070:A:G
Gene:: TSIX (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0.00379/45 (ALFA)
HGVS:: NC_000023.11:g.73806071A>G, NC_000023.10:g.73025906A>G, NR_003255.2:n.13867A>G

Select item 148997076715.

rs1489970767 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: X:73797009 (GRCh38)
X:73016844 (GRCh37)
Canonical SPDI:: NC_000023.11:73797008:T:C
Gene:: TSIX (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.00001/1 (GnomAD)
HGVS:: NC_000023.11:g.73797009T>C, NC_000023.10:g.73016844T>C, NR_003255.2:n.4805T>C

Select item 148989037716.

rs1489890377 [Homo sapiens]

Variant type:: DELINS
Alleles:: TG>- [Show Flanks]
Chromosome:: X:73806905 (GRCh38)
X:73026740 (GRCh37)
Canonical SPDI:: NC_000023.11:73806903:GTG:G
Gene:: TSIX (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
-=0.00001/1 (GnomAD)
HGVS:: NC_000023.11:g.73806905_73806906del, NC_000023.10:g.73026740_73026741del, NR_003255.2:n.14701_14702del

Select item 148968941617.

rs1489689416 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: X:73814199 (GRCh38)
X:73034034 (GRCh37)
Canonical SPDI:: NC_000023.11:73814198:T:C
Gene:: TSIX (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
HGVS:: NC_000023.11:g.73814199T>C, NC_000023.10:g.73034034T>C, NR_003255.2:n.21995T>C

Select item 148960800418.

rs1489608004 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: X:73817259 (GRCh38)
X:73037094 (GRCh37)
Canonical SPDI:: NC_000023.11:73817258:G:T
Gene:: TSIX (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
T=0.00001/1 (GnomAD)
HGVS:: NC_000023.11:g.73817259G>T, NC_000023.10:g.73037094G>T, NR_003255.2:n.25055G>T

Select item 148957838219.

rs1489578382 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: X:73795351 (GRCh38)
X:73015186 (GRCh37)
Canonical SPDI:: NC_000023.11:73795350:G:A
Gene:: TSIX (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.00001/1 (GnomAD)
A=0.000015/4 (TOPMED)
HGVS:: NC_000023.11:g.73795351G>A, NC_000023.10:g.73015186G>A, NR_003255.2:n.3147G>A

Select item 148944413520.

rs1489444135 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: X:73821991 (GRCh38)
X:73041826 (GRCh37)
Canonical SPDI:: NC_000023.11:73821990:A:T
Gene:: XIST (Varview), TSIX (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0.000111/1 (ALFA)
T=0.000006/1 (GnomAD_exomes)
HGVS:: NC_000023.11:g.73821991A>T, NC_000023.10:g.73041826A>T, NG_016172.1:g.35763T>A, NR_001564.2:n.17940T>A, NR_003255.2:n.29787A>T

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