SNP Links for Gene (Select 93653) - SNP

Links from Gene

Items: 1 to 20 of 989

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Select item 14908324931.

rs1490832493 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 7:116952700 (GRCh38)
7:116592754 (GRCh37)
Canonical SPDI:: NC_000007.14:116952699:T:C
Gene:: ST7 (Varview), ST7-AS1 (Varview), ST7-OT4 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant
HGVS:: NC_000007.14:g.116952700T>C, NC_000007.13:g.116592754T>C, NG_047088.1:g.4374T>C, NR_002330.1:n.1635A>G

Select item 14904023552.

rs1490402355 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->T [Show Flanks]
Chromosome:: 7:116954903 (GRCh38)
7:116594958 (GRCh37)
Canonical SPDI:: NC_000007.14:116954903:TTT:TTTT
Gene:: ST7 (Varview), ST7-AS1 (Varview), ST7-OT4 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTT=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.116954906dup, NC_000007.13:g.116594960dup, NG_047088.1:g.6580dup

Select item 14902555933.

rs1490255593 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 7:116955058 (GRCh38)
7:116595112 (GRCh37)
Canonical SPDI:: NC_000007.14:116955057:C:G
Gene:: ST7 (Varview), ST7-AS1 (Varview), ST7-OT4 (Varview)
Functional Consequence:: non_coding_transcript_variant,genic_upstream_transcript_variant,upstream_transcript_variant,2KB_upstream_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: G=0.000111/1 (ALFA)
G=0.000014/2 (GnomAD_exomes)
HGVS:: NC_000007.14:g.116955058C>G, NC_000007.13:g.116595112C>G, NG_047088.1:g.6732C>G, NR_002329.2:n.566C>G, NR_002329.1:n.515C>G

Select item 14887262794.

rs1488726279 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 7:116953764 (GRCh38)
7:116593818 (GRCh37)
Canonical SPDI:: NC_000007.14:116953763:G:A
Gene:: ST7 (Varview), ST7-AS1 (Varview), ST7-OT4 (Varview)
Functional Consequence:: non_coding_transcript_variant,genic_upstream_transcript_variant,upstream_transcript_variant,2KB_upstream_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000022/3 (GnomAD)
A=0.000035/1 (TOMMO)
HGVS:: NC_000007.14:g.116953764G>A, NC_000007.13:g.116593818G>A, NG_047088.1:g.5438G>A, NR_002330.1:n.571C>T

Select item 14886311935.

rs1488631193 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: 7:116952789 (GRCh38)
7:116592843 (GRCh37)
Canonical SPDI:: NC_000007.14:116952788:T:C,NC_000007.14:116952788:T:G
Gene:: ST7 (Varview), ST7-AS1 (Varview), ST7-OT4 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
C=0.000071/1 (TOMMO)
HGVS:: NC_000007.14:g.116952789T>C, NC_000007.14:g.116952789T>G, NC_000007.13:g.116592843T>C, NC_000007.13:g.116592843T>G, NG_047088.1:g.4463T>C, NG_047088.1:g.4463T>G, NR_002330.1:n.1546A>G, NR_002330.1:n.1546A>C

Select item 14880688466.

rs1488068846 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 7:116954371 (GRCh38)
7:116594425 (GRCh37)
Canonical SPDI:: NC_000007.14:116954370:G:A
Gene:: ST7 (Varview), ST7-AS1 (Varview), ST7-OT4 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000019/5 (TOPMED)
HGVS:: NC_000007.14:g.116954371G>A, NC_000007.13:g.116594425G>A, NG_047088.1:g.6045G>A

Select item 14877713867.

rs1487771386 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 7:116954350 (GRCh38)
7:116594404 (GRCh37)
Canonical SPDI:: NC_000007.14:116954349:G:A
Gene:: ST7 (Varview), ST7-AS1 (Varview), ST7-OT4 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.116954350G>A, NC_000007.13:g.116594404G>A, NG_047088.1:g.6024G>A

Select item 14875560258.

rs1487556025 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 7:116954276 (GRCh38)
7:116594330 (GRCh37)
Canonical SPDI:: NC_000007.14:116954275:G:A,NC_000007.14:116954275:G:C
Gene:: ST7 (Varview), ST7-AS1 (Varview), ST7-OT4 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
A=0.000007/1 (GnomAD)
C=0.00003/8 (TOPMED)
HGVS:: NC_000007.14:g.116954276G>A, NC_000007.14:g.116954276G>C, NC_000007.13:g.116594330G>A, NC_000007.13:g.116594330G>C, NG_047088.1:g.5950G>A, NG_047088.1:g.5950G>C, NR_002330.1:n.59C>T, NR_002330.1:n.59C>G

Select item 14867322239.

rs1486732223 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G [Show Flanks]
Chromosome:: 7:116956165 (GRCh38)
7:116596219 (GRCh37)
Canonical SPDI:: NC_000007.14:116956164:C:A,NC_000007.14:116956164:C:G
Gene:: ST7 (Varview), ST7-AS1 (Varview), ST7-OT4 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0./0 (GnomAD)
A=0.000004/1 (TOPMED)
HGVS:: NC_000007.14:g.116956165C>A, NC_000007.14:g.116956165C>G, NC_000007.13:g.116596219C>A, NC_000007.13:g.116596219C>G, NG_047088.1:g.7839C>A, NG_047088.1:g.7839C>G

Select item 148671540910.

rs1486715409 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 7:116952970 (GRCh38)
7:116593024 (GRCh37)
Canonical SPDI:: NC_000007.14:116952969:C:T
Gene:: ST7 (Varview), ST7-AS1 (Varview), ST7-OT4 (Varview)
Functional Consequence:: non_coding_transcript_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000011/3 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000007.14:g.116952970C>T, NC_000007.13:g.116593024C>T, NG_047088.1:g.4644C>T, NR_002330.1:n.1365G>A

Select item 148669980611.

rs1486699806 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 7:116955007 (GRCh38)
7:116595061 (GRCh37)
Canonical SPDI:: NC_000007.14:116955006:A:G
Gene:: ST7 (Varview), ST7-AS1 (Varview), ST7-OT4 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_upstream_transcript_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000008/2 (TOPMED)
HGVS:: NC_000007.14:g.116955007A>G, NC_000007.13:g.116595061A>G, NG_047088.1:g.6681A>G, NR_002329.2:n.515A>G, NR_002329.1:n.464A>G

Select item 148642491612.

rs1486424916 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 7:116954118 (GRCh38)
7:116594172 (GRCh37)
Canonical SPDI:: NC_000007.14:116954117:C:G
Gene:: ST7 (Varview), ST7-AS1 (Varview), ST7-OT4 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000014/2 (GnomAD)
G=0.000023/6 (TOPMED)
HGVS:: NC_000007.14:g.116954118C>G, NC_000007.13:g.116594172C>G, NG_047088.1:g.5792C>G, NR_002330.1:n.217G>C

Select item 148500744613.

rs1485007446 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 7:116953700 (GRCh38)
7:116593754 (GRCh37)
Canonical SPDI:: NC_000007.14:116953699:T:C
Gene:: ST7 (Varview), ST7-AS1 (Varview), ST7-OT4 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_upstream_transcript_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency
MAF:: C=0.000025/5 (GnomAD_exomes)
HGVS:: NC_000007.14:g.116953700T>C, NC_000007.13:g.116593754T>C, NG_047088.1:g.5374T>C, NR_002330.1:n.635A>G

Select item 148476126414.

rs1484761264 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 7:116955035 (GRCh38)
7:116595089 (GRCh37)
Canonical SPDI:: NC_000007.14:116955034:C:G,NC_000007.14:116955034:C:T
Gene:: ST7 (Varview), ST7-AS1 (Varview), ST7-OT4 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_upstream_transcript_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000071/1 (TOMMO)
HGVS:: NC_000007.14:g.116955035C>G, NC_000007.14:g.116955035C>T, NC_000007.13:g.116595089C>G, NC_000007.13:g.116595089C>T, NG_047088.1:g.6709C>G, NG_047088.1:g.6709C>T, NR_002329.2:n.543C>G, NR_002329.2:n.543C>T, NR_002329.1:n.492C>G, NR_002329.1:n.492C>T

Select item 148447684615.

rs1484476846 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 7:116953413 (GRCh38)
7:116593467 (GRCh37)
Canonical SPDI:: NC_000007.14:116953412:C:T
Gene:: ST7 (Varview), ST7-AS1 (Varview), ST7-OT4 (Varview)
Functional Consequence:: non_coding_transcript_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000067/9 (GnomAD)
T=0.000076/20 (TOPMED)
HGVS:: NC_000007.14:g.116953413C>T, NC_000007.13:g.116593467C>T, NG_047088.1:g.5087C>T, NM_018412.3:c.-128C>T, NM_021908.2:c.-128C>T, NR_002330.1:n.922G>A

Select item 148442698116.

rs1484426981 has merged into rs1056592348 [Homo sapiens]

Variant type:: DELINS
Alleles:: GCGGCG>-,GCG,GCGGCGGCG,GCGGCGGCGGCG [Show Flanks]
Chromosome:: 7:116953460 (GRCh38)
7:116593514 (GRCh37)
Canonical SPDI:: NC_000007.14:116953447:GCGGCGGCGGCGGCGGCG:GCGGCGGCGGCG,NC_000007.14:116953447:GCGGCGGCGGCGGCGGCG:GCGGCGGCGGCGGCG,NC_000007.14:116953447:GCGGCGGCGGCGGCGGCG:GCGGCGGCGGCGGCGGCGGCG,NC_000007.14:116953447:GCGGCGGCGGCGGCGGCG:GCGGCGGCGGCGGCGGCGGCGGCG
Gene:: ST7 (Varview), ST7-AS1 (Varview), ST7-OT4 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GCGGCGGCGGCGGCGGCGGCG=0./0 (ALFA)
GCG=0.00025/4 (TOMMO)
HGVS:: NC_000007.14:g.116953448GCG[4], NC_000007.14:g.116953448GCG[5], NC_000007.14:g.116953448GCG[7], NC_000007.14:g.116953448GCG[8], NC_000007.13:g.116593502GCG[4], NC_000007.13:g.116593502GCG[5], NC_000007.13:g.116593502GCG[7], NC_000007.13:g.116593502GCG[8], NG_047088.1:g.5122GCG[4], NG_047088.1:g.5122GCG[5], NG_047088.1:g.5122GCG[7], NG_047088.1:g.5122GCG[8], NM_018412.3:c.-93GCG[4], NM_018412.3:c.-93GCG[5], NM_018412.3:c.-93GCG[7], NM_018412.3:c.-93GCG[8], NM_021908.2:c.-93GCG[4], NM_021908.2:c.-93GCG[5], NM_021908.2:c.-93GCG[7], NM_021908.2:c.-93GCG[8], NR_002330.1:n.870CGC[4], NR_002330.1:n.870CGC[5], NR_002330.1:n.870CGC[7], NR_002330.1:n.870CGC[8]

Select item 148362404317.

rs1483624043 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 7:116956291 (GRCh38)
7:116596345 (GRCh37)
Canonical SPDI:: NC_000007.14:116956290:A:G
Gene:: ST7 (Varview), ST7-AS1 (Varview), ST7-OT4 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
G=0.000014/2 (GnomAD)
HGVS:: NC_000007.14:g.116956291A>G, NC_000007.13:g.116596345A>G, NG_047088.1:g.7965A>G

Select item 148216774318.

rs1482167743 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 7:116953362 (GRCh38)
7:116593416 (GRCh37)
Canonical SPDI:: NC_000007.14:116953361:G:A
Gene:: ST7 (Varview), ST7-AS1 (Varview), ST7-OT4 (Varview)
Functional Consequence:: non_coding_transcript_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000007.14:g.116953362G>A, NC_000007.13:g.116593416G>A, NG_047088.1:g.5036G>A, NM_018412.3:c.-179G>A, NM_021908.2:c.-179G>A, NR_002330.1:n.973C>T

Select item 148216103219.

rs1482161032 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 7:116955126 (GRCh38)
7:116595180 (GRCh37)
Canonical SPDI:: NC_000007.14:116955125:G:A
Gene:: ST7 (Varview), ST7-AS1 (Varview), ST7-OT4 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_upstream_transcript_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000011/3 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000007.14:g.116955126G>A, NC_000007.13:g.116595180G>A, NG_047088.1:g.6800G>A, NR_002329.2:n.634G>A, NR_002329.1:n.583G>A

Select item 148214174820.

rs1482141748 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 7:116953907 (GRCh38)
7:116593961 (GRCh37)
Canonical SPDI:: NC_000007.14:116953906:G:A
Gene:: ST7 (Varview), ST7-AS1 (Varview), ST7-OT4 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.116953907G>A, NC_000007.13:g.116593961G>A, NG_047088.1:g.5581G>A, NR_002329.2:n.60G>A, NR_002329.1:n.9G>A, NR_002330.1:n.428C>T

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