SNP Links for Gene (Select 932) - SNP

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Select item 14910891831.

rs1491089183 has merged into rs35764500 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTTTTTTT>-,TTTT,TTTTT,TTTTTT,TTTTTTT,TTTTTTTTT,TTTTTTTTTT,TTTTTTTTTTT,TTTTTTTTTTTT,TTTTTTTTTTTTT,TTTTTTTTTTTTTT,TTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTT [Show Flanks]
Chromosome:: 11:60067223 (GRCh38)
11:59834696 (GRCh37)
Canonical SPDI:: NC_000011.10:60067212:TTTTTTTTTTTTTTTTTT:TTTTTTTTTT,NC_000011.10:60067212:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000011.10:60067212:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000011.10:60067212:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000011.10:60067212:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000011.10:60067212:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT,NC_000011.10:60067212:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTT,NC_000011.10:60067212:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT,NC_000011.10:60067212:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTT,NC_000011.10:60067212:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTT,NC_000011.10:60067212:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTT,NC_000011.10:60067212:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTT,NC_000011.10:60067212:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000011.10:60067212:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTT
Gene:: MS4A3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTTTTTTT=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000011.10:g.60067223_60067230del, NC_000011.10:g.60067227_60067230del, NC_000011.10:g.60067228_60067230del, NC_000011.10:g.60067229_60067230del, NC_000011.10:g.60067230del, NC_000011.10:g.60067230dup, NC_000011.10:g.60067229_60067230dup, NC_000011.10:g.60067228_60067230dup, NC_000011.10:g.60067227_60067230dup, NC_000011.10:g.60067226_60067230dup, NC_000011.10:g.60067225_60067230dup, NC_000011.10:g.60067224_60067230dup, NC_000011.10:g.60067223_60067230dup, NC_000011.10:g.60067222_60067230dup, NC_000011.9:g.59834696_59834703del, NC_000011.9:g.59834700_59834703del, NC_000011.9:g.59834701_59834703del, NC_000011.9:g.59834702_59834703del, NC_000011.9:g.59834703del, NC_000011.9:g.59834703dup, NC_000011.9:g.59834702_59834703dup, NC_000011.9:g.59834701_59834703dup, NC_000011.9:g.59834700_59834703dup, NC_000011.9:g.59834699_59834703dup, NC_000011.9:g.59834698_59834703dup, NC_000011.9:g.59834697_59834703dup, NC_000011.9:g.59834696_59834703dup, NC_000011.9:g.59834695_59834703dup, NW_019805498.1:g.161104_161111del, NW_019805498.1:g.161108_161111del, NW_019805498.1:g.161109_161111del, NW_019805498.1:g.161110_161111del, NW_019805498.1:g.161111del, NW_019805498.1:g.161111dup, NW_019805498.1:g.161110_161111dup, NW_019805498.1:g.161109_161111dup, NW_019805498.1:g.161108_161111dup, NW_019805498.1:g.161107_161111dup, NW_019805498.1:g.161106_161111dup, NW_019805498.1:g.161105_161111dup, NW_019805498.1:g.161104_161111dup, NW_019805498.1:g.161103_161111dup

Select item 14910778462.

rs1491077846 has merged into rs71456407 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTTTTTTTT>-,T,TT,TTT,TTTTT,TTTTTT,TTTTTTT,TTTTTTTT,TTTTTTTTTT,TTTTTTTTTTT,TTTTTTTTTTTT,TTTTTTTTTTTTT,TTTTTTTTTTTTTT,TTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTT [Show Flanks]
Chromosome:: 11:60068249 (GRCh38)
11:59835722 (GRCh37)
Canonical SPDI:: NC_000011.10:60068238:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTT,NC_000011.10:60068238:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTT,NC_000011.10:60068238:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTT,NC_000011.10:60068238:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTT,NC_000011.10:60068238:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000011.10:60068238:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000011.10:60068238:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000011.10:60068238:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT,NC_000011.10:60068238:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTT,NC_000011.10:60068238:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT,NC_000011.10:60068238:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTT,NC_000011.10:60068238:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTT,NC_000011.10:60068238:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTT,NC_000011.10:60068238:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTT,NC_000011.10:60068238:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000011.10:60068238:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTT
Gene:: MS4A3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTTTTT=0./0 (ALFA)
-=0.45/18 (GENOME_DK)
HGVS:: NC_000011.10:g.60068249_60068257del, NC_000011.10:g.60068250_60068257del, NC_000011.10:g.60068251_60068257del, NC_000011.10:g.60068252_60068257del, NC_000011.10:g.60068254_60068257del, NC_000011.10:g.60068255_60068257del, NC_000011.10:g.60068256_60068257del, NC_000011.10:g.60068257del, NC_000011.10:g.60068257dup, NC_000011.10:g.60068256_60068257dup, NC_000011.10:g.60068255_60068257dup, NC_000011.10:g.60068254_60068257dup, NC_000011.10:g.60068253_60068257dup, NC_000011.10:g.60068252_60068257dup, NC_000011.10:g.60068251_60068257dup, NC_000011.10:g.60068249_60068257dup, NC_000011.9:g.59835722_59835730del, NC_000011.9:g.59835723_59835730del, NC_000011.9:g.59835724_59835730del, NC_000011.9:g.59835725_59835730del, NC_000011.9:g.59835727_59835730del, NC_000011.9:g.59835728_59835730del, NC_000011.9:g.59835729_59835730del, NC_000011.9:g.59835730del, NC_000011.9:g.59835730dup, NC_000011.9:g.59835729_59835730dup, NC_000011.9:g.59835728_59835730dup, NC_000011.9:g.59835727_59835730dup, NC_000011.9:g.59835726_59835730dup, NC_000011.9:g.59835725_59835730dup, NC_000011.9:g.59835724_59835730dup, NC_000011.9:g.59835722_59835730dup, NW_019805498.1:g.162130_162138del, NW_019805498.1:g.162131_162138del, NW_019805498.1:g.162132_162138del, NW_019805498.1:g.162133_162138del, NW_019805498.1:g.162135_162138del, NW_019805498.1:g.162136_162138del, NW_019805498.1:g.162137_162138del, NW_019805498.1:g.162138del, NW_019805498.1:g.162138dup, NW_019805498.1:g.162137_162138dup, NW_019805498.1:g.162136_162138dup, NW_019805498.1:g.162135_162138dup, NW_019805498.1:g.162134_162138dup, NW_019805498.1:g.162133_162138dup, NW_019805498.1:g.162132_162138dup, NW_019805498.1:g.162130_162138dup

Select item 14909420713.

rs1490942071 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 11:60068162 (GRCh38)
11:59835635 (GRCh37)
Canonical SPDI:: NC_000011.10:60068161:T:C
Gene:: MS4A3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000011.10:g.60068162T>C, NC_000011.9:g.59835635T>C, NW_019805498.1:g.162043T>C

Select item 14907095864.

rs1490709586 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 11:60061349 (GRCh38)
11:59828822 (GRCh37)
Canonical SPDI:: NC_000011.10:60061348:G:C
Gene:: MS4A3 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000011.10:g.60061349G>C, NC_000011.9:g.59828822G>C, NW_019805498.1:g.155223G>C

Select item 14906836475.

rs1490683647 [Homo sapiens]

Variant type:: DELINS
Alleles:: CT>- [Show Flanks]
Chromosome:: 11:60061434 (GRCh38)
11:59828907 (GRCh37)
Canonical SPDI:: NC_000011.10:60061431:CTCT:CT
Gene:: MS4A3 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: CTCT=0.000071/1 (ALFA)
-=0.000008/2 (TOPMED)
HGVS:: NC_000011.10:g.60061432CT[1], NC_000011.9:g.59828905CT[1], NW_019805498.1:g.155306CT[1]

Select item 14906444806.

rs1490644480 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 11:60064556 (GRCh38)
11:59832029 (GRCh37)
Canonical SPDI:: NC_000011.10:60064555:T:C
Gene:: MS4A3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000324/6 (ALFA)
C=0.000019/5 (TOPMED)
C=0.000071/10 (GnomAD)
C=0.001339/6 (Estonian)
HGVS:: NC_000011.10:g.60064556T>C, NC_000011.9:g.59832029T>C, NW_019805498.1:g.158437T>C

Select item 14904914277.

rs1490491427 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 11:60054741 (GRCh38)
11:59822214 (GRCh37)
Canonical SPDI:: NC_000011.10:60054740:A:G
Gene:: MS4A3 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000011/3 (TOPMED)
G=0.000021/3 (GnomAD)
HGVS:: NC_000011.10:g.60054741A>G, NC_000011.9:g.59822214A>G, NW_019805498.1:g.148613A>G

Select item 14901471758.

rs1490147175 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 11:60063216 (GRCh38)
11:59830689 (GRCh37)
Canonical SPDI:: NC_000011.10:60063215:A:G
Gene:: MS4A3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000011.10:g.60063216A>G, NC_000011.9:g.59830689A>G, NW_019805498.1:g.157090A>G

Select item 14901228379.

rs1490122837 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->G [Show Flanks]
Chromosome:: 11:60067813 (GRCh38)
11:59835287 (GRCh37)
Canonical SPDI:: NC_000011.10:60067813:G:GG
Gene:: MS4A3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: GG=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000011.10:g.60067814dup, NC_000011.9:g.59835287dup, NW_019805498.1:g.161695dup

Select item 148987738110.

rs1489877381 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:60059533 (GRCh38)
11:59827006 (GRCh37)
Canonical SPDI:: NC_000011.10:60059532:C:T
Gene:: MS4A3 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000011/3 (TOPMED)
HGVS:: NC_000011.10:g.60059533C>T, NC_000011.9:g.59827006C>T, NW_019805498.1:g.153407C>T

Select item 148986747211.

rs1489867472 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 11:60060946 (GRCh38)
11:59828419 (GRCh37)
Canonical SPDI:: NC_000011.10:60060945:A:G
Gene:: MS4A3 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.60060946A>G, NC_000011.9:g.59828419A>G, NW_019805498.1:g.154820A>G

Select item 148973124412.

rs1489731244 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:60067416 (GRCh38)
11:59834889 (GRCh37)
Canonical SPDI:: NC_000011.10:60067415:C:T
Gene:: MS4A3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000011.10:g.60067416C>T, NC_000011.9:g.59834889C>T, NW_019805498.1:g.161297C>T

Select item 148960089113.

rs1489600891 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 11:60069998 (GRCh38)
11:59837471 (GRCh37)
Canonical SPDI:: NC_000011.10:60069997:T:C
Gene:: MS4A3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000011.10:g.60069998T>C, NC_000011.9:g.59837471T>C, NW_019805498.1:g.163879T>C

Select item 148954968914.

rs1489549689 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 11:60063319 (GRCh38)
11:59830792 (GRCh37)
Canonical SPDI:: NC_000011.10:60063318:A:G
Gene:: MS4A3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000015/4 (TOPMED)
G=0.000036/5 (GnomAD)
HGVS:: NC_000011.10:g.60063319A>G, NC_000011.9:g.59830792A>G, NW_019805498.1:g.157193A>G

Select item 148932684215.

rs1489326842 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 11:60058326 (GRCh38)
11:59825799 (GRCh37)
Canonical SPDI:: NC_000011.10:60058325:G:A
Gene:: MS4A3 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000011.10:g.60058326G>A, NC_000011.9:g.59825799G>A, NW_019805498.1:g.152196G>A

Select item 148923066016.

rs1489230660 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 11:60055685 (GRCh38)
11:59823158 (GRCh37)
Canonical SPDI:: NC_000011.10:60055684:G:T
Gene:: MS4A3 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.60055685G>T, NC_000011.9:g.59823158G>T, NW_019805498.1:g.149557G>T

Select item 148903288817.

rs1489032888 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 11:60070365 (GRCh38)
11:59837838 (GRCh37)
Canonical SPDI:: NC_000011.10:60070364:T:A
Gene:: MS4A3 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000011.10:g.60070365T>A, NC_000011.9:g.59837838T>A, NW_019805498.1:g.164254T>A, NM_006138.5:c.*132T>A, NM_006138.4:c.*132T>A, XM_011545363.4:c.*132T>A, XM_011545363.3:c.*132T>A, XM_011545363.2:c.*132T>A, XM_011545363.1:c.*132T>A, NM_001031809.2:c.*132T>A, NM_001031809.1:c.*132T>A, NM_001031666.2:c.*132T>A, NM_001031666.1:c.*132T>A

Select item 148891220018.

rs1488912200 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C,T [Show Flanks]
Chromosome:: 11:60064466 (GRCh38)
11:59831939 (GRCh37)
Canonical SPDI:: NC_000011.10:60064465:G:C,NC_000011.10:60064465:G:T
Gene:: MS4A3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000011.10:g.60064466G>C, NC_000011.10:g.60064466G>T, NC_000011.9:g.59831939G>C, NC_000011.9:g.59831939G>T, NW_019805498.1:g.158344G>C, NW_019805498.1:g.158344G>T

Select item 148889907619.

rs1488899076 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:60059985 (GRCh38)
11:59827458 (GRCh37)
Canonical SPDI:: NC_000011.10:60059984:C:T
Gene:: MS4A3 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000011/3 (TOPMED)
HGVS:: NC_000011.10:g.60059985C>T, NC_000011.9:g.59827458C>T, NW_019805498.1:g.153859C>T

Select item 148879611020.

rs1488796110 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 11:60067736 (GRCh38)
11:59835209 (GRCh37)
Canonical SPDI:: NC_000011.10:60067735:C:G
Gene:: MS4A3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.60067736C>G, NC_000011.9:g.59835209C>G, NW_019805498.1:g.161617C>G

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