SNP Links for Gene (Select 9087) - SNP

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Items: 1 to 20 of 134

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Select item 14699967841.

rs1469996784 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: Y:13705181 (GRCh38)
Y:15817061 (GRCh37)
Canonical SPDI:: NC_000024.10:13705180:A:C
Gene:: TMSB4Y (Varview)
Functional Consequence:: intron_variant
HGVS:: NC_000024.10:g.13705181A>C, NC_000024.9:g.15817061A>C

Select item 14691079252.

rs1469107925 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: Y:13702952 (GRCh38)
Y:15814832 (GRCh37)
Canonical SPDI:: NC_000024.10:13702951:A:C
Gene:: TMSB4Y (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
HGVS:: NC_000024.10:g.13702952A>C, NC_000024.9:g.15814832A>C

Select item 14260162103.

rs1426016210 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: Y:13704356 (GRCh38)
Y:15816236 (GRCh37)
Canonical SPDI:: NC_000024.10:13704355:G:T
Gene:: TMSB4Y (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant
Validated:: by frequency
MAF:: T=0.00001/1 (GnomAD_exomes)
HGVS:: NC_000024.10:g.13704356G>T, NC_000024.9:g.15816236G>T, NM_004202.3:c.21G>T, NM_004202.2:c.21G>T, NP_004193.1:p.Met7Ile

Select item 14219224294.

rs1421922429 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: Y:13705453 (GRCh38)
Y:15817333 (GRCh37)
Canonical SPDI:: NC_000024.10:13705452:A:G
Gene:: TMSB4Y (Varview)
Functional Consequence:: 3_prime_UTR_variant
HGVS:: NC_000024.10:g.13705453A>G, NC_000024.9:g.15817333A>G, NM_004202.3:c.*194A>G, NM_004202.2:c.*194A>G

Select item 14030660605.

rs1403066060 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: Y:13705251 (GRCh38)
Y:15817131 (GRCh37)
Canonical SPDI:: NC_000024.10:13705250:G:T
Gene:: TMSB4Y (Varview)
Functional Consequence:: coding_sequence_variant,stop_gained
HGVS:: NC_000024.10:g.13705251G>T, NC_000024.9:g.15817131G>T, NM_004202.3:c.127G>T, NM_004202.2:c.127G>T, NP_004193.1:p.Glu43Ter

Select item 14004554576.

rs1400455457 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: Y:13704289 (GRCh38)
Y:15816169 (GRCh37)
Canonical SPDI:: NC_000024.10:13704288:T:C
Gene:: TMSB4Y (Varview)
Functional Consequence:: 5_prime_UTR_variant
Validated:: by frequency
MAF:: C=0.00002/1 (GnomAD_exomes)
HGVS:: NC_000024.10:g.13704289T>C, NC_000024.9:g.15816169T>C, NM_004202.3:c.-47T>C, NM_004202.2:c.-47T>C

Select item 13876335747.

rs1387633574 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->T [Show Flanks]
Chromosome:: Y:13705207 (GRCh38)
Y:15817088 (GRCh37)
Canonical SPDI:: NC_000024.10:13705207:TTTTTTT:TTTTTTTT
Gene:: TMSB4Y (Varview)
Functional Consequence:: intron_variant
HGVS:: NC_000024.10:g.13705214dup, NC_000024.9:g.15817094dup

Select item 13798580158.

rs1379858015 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: Y:13702817 (GRCh38)
Y:15814697 (GRCh37)
Canonical SPDI:: NC_000024.10:13702816:G:C
Gene:: TMSB4Y (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
HGVS:: NC_000024.10:g.13702817G>C, NC_000024.9:g.15814697G>C

Select item 13679844819.

rs1367984481 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: Y:13704337 (GRCh38)
Y:15816217 (GRCh37)
Canonical SPDI:: NC_000024.10:13704336:T:A
Gene:: TMSB4Y (Varview)
Functional Consequence:: missense_variant,initiator_codon_variant
Validated:: by frequency
MAF:: A=0.00001/1 (GnomAD_exomes)
HGVS:: NC_000024.10:g.13704337T>A, NC_000024.9:g.15816217T>A, NM_004202.3:c.2T>A, NM_004202.2:c.2T>A, NP_004193.1:p.Met1Lys

Select item 136460871910.

rs1364608719 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: Y:13706522 (GRCh38)
Y:15818402 (GRCh37)
Canonical SPDI:: NC_000024.10:13706521:G:A
Gene:: TMSB4Y (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by cluster
MAF:: A=0.00003/1 (GnomAD)
HGVS:: NC_000024.10:g.13706522G>A, NC_000024.9:g.15818402G>A

Select item 136143843211.

rs1361438432 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: Y:13704418 (GRCh38)
Y:15816298 (GRCh37)
Canonical SPDI:: NC_000024.10:13704417:C:A
Gene:: TMSB4Y (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant
Validated:: by frequency
MAF:: A=0.00002/1 (GnomAD_exomes)
HGVS:: NC_000024.10:g.13704418C>A, NC_000024.9:g.15816298C>A, NM_004202.3:c.83C>A, NM_004202.2:c.83C>A, NP_004193.1:p.Pro28Gln

Select item 131148441712.

rs1311484417 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: Y:13702425 (GRCh38)
Y:15814305 (GRCh37)
Canonical SPDI:: NC_000024.10:13702424:A:C
Gene:: TMSB4Y (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by cluster
MAF:: C=0./0 (PRJEB36033)
A=0./0 (SGDP_PRJ)
HGVS:: NC_000024.10:g.13702425A>C, NC_000024.9:g.15814305A>C

Select item 130315909913.

rs1303159099 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: Y:13704362 (GRCh38)
Y:15816242 (GRCh37)
Canonical SPDI:: NC_000024.10:13704361:G:C
Gene:: TMSB4Y (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant
Validated:: by frequency
MAF:: C=0.00001/1 (GnomAD_exomes)
HGVS:: NC_000024.10:g.13704362G>C, NC_000024.9:g.15816242G>C, NM_004202.3:c.27G>C, NM_004202.2:c.27G>C, NP_004193.1:p.Glu9Asp

Select item 130085063914.

rs1300850639 [Homo sapiens]

Variant type:: DELINS
Alleles:: C>- [Show Flanks]
Chromosome:: Y:13706319 (GRCh38)
Y:15818199 (GRCh37)
Canonical SPDI:: NC_000024.10:13706318:CCC:CC
Gene:: TMSB4Y (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
HGVS:: NC_000024.10:g.13706321del, NC_000024.9:g.15818201del

Select item 129108735015.

rs1291087350 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: Y:13704444 (GRCh38)
Y:15816324 (GRCh37)
Canonical SPDI:: NC_000024.10:13704443:C:T
Gene:: TMSB4Y (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency
MAF:: T=0.00002/1 (GnomAD_exomes)
HGVS:: NC_000024.10:g.13704444C>T, NC_000024.9:g.15816324C>T

Select item 128090529116.

rs1280905291 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: Y:13704389 (GRCh38)
Y:15816269 (GRCh37)
Canonical SPDI:: NC_000024.10:13704388:G:A
Gene:: TMSB4Y (Varview)
Functional Consequence:: coding_sequence_variant,synonymous_variant
Validated:: by frequency
MAF:: A=0.00003/2 (GnomAD_exomes)
HGVS:: NC_000024.10:g.13704389G>A, NC_000024.9:g.15816269G>A, NM_004202.3:c.54G>A, NM_004202.2:c.54G>A

Select item 127528778417.

rs1275287784 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: Y:13704231 (GRCh38)
Y:15816111 (GRCh37)
Canonical SPDI:: NC_000024.10:13704230:G:C
Gene:: TMSB4Y (Varview)
Functional Consequence:: 5_prime_UTR_variant
HGVS:: NC_000024.10:g.13704231G>C, NC_000024.9:g.15816111G>C, NM_004202.3:c.-105G>C, NM_004202.2:c.-105G>C

Select item 122299534318.

rs1222995343 [Homo sapiens]

Variant type:: DELINS
Alleles:: GA>- [Show Flanks]
Chromosome:: Y:13704399 (GRCh38)
Y:15816279 (GRCh37)
Canonical SPDI:: NC_000024.10:13704397:AGA:A
Gene:: TMSB4Y (Varview)
Functional Consequence:: frameshift_variant,coding_sequence_variant
Validated:: by frequency,by cluster
MAF:: -=0.00001/1 (GnomAD_exomes)
-=0.00003/1 (GnomAD)
HGVS:: NC_000024.10:g.13704399_13704400del, NC_000024.9:g.15816279_15816280del, NM_004202.3:c.64_65del, NM_004202.2:c.64_65del, NP_004193.1:p.Glu22fs

Select item 121385813119.

rs1213858131 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: Y:13704180 (GRCh38)
Y:15816060 (GRCh37)
Canonical SPDI:: NC_000024.10:13704179:G:A
Gene:: TMSB4Y (Varview)
Functional Consequence:: 5_prime_UTR_variant
HGVS:: NC_000024.10:g.13704180G>A, NC_000024.9:g.15816060G>A, NM_004202.3:c.-156G>A, NM_004202.2:c.-156G>A

Select item 119972080320.

rs1199720803 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: Y:13702725 (GRCh38)
Y:15814605 (GRCh37)
Canonical SPDI:: NC_000024.10:13702724:G:A
Gene:: TMSB4Y (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by cluster
HGVS:: NC_000024.10:g.13702725G>A, NC_000024.9:g.15814605G>A

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