SNP Links for Gene (Select 90655) - SNP

Links from Gene

Items: 1 to 20 of 113

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Select item 14802757721.

rs1480275772 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: Y:3578151 (GRCh38)
Y:3446192 (GRCh37)
Canonical SPDI:: NC_000024.10:3578150:G:A
Gene:: TGIF2LY (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by cluster
MAF:: A=0.1655/365 (KOREAN)
G=0.2333/21 (SGDP_PRJ)
HGVS:: NC_000024.10:g.3578151G>A, NC_000024.9:g.3446192G>A

Select item 14785414722.

rs1478541472 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: Y:3579488 (GRCh38)
Y:3447529 (GRCh37)
Canonical SPDI:: NC_000024.10:3579487:G:A
Gene:: TGIF2LY (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant
Validated:: by frequency
MAF:: A=0.00001/1 (GnomAD_exomes)
HGVS:: NC_000024.10:g.3579488G>A, NC_000024.9:g.3447529G>A, NM_139214.3:c.244G>A, NM_139214.2:c.244G>A, NP_631960.1:p.Glu82Lys

Select item 14407951013.

rs1440795101 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: Y:3579436 (GRCh38)
Y:3447477 (GRCh37)
Canonical SPDI:: NC_000024.10:3579435:C:T
Gene:: TGIF2LY (Varview)
Functional Consequence:: coding_sequence_variant,synonymous_variant
Validated:: by frequency
MAF:: T=0.00001/1 (GnomAD_exomes)
HGVS:: NC_000024.10:g.3579436C>T, NC_000024.9:g.3447477C>T, NM_139214.3:c.192C>T, NM_139214.2:c.192C>T

Select item 14245408014.

rs1424540801 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: Y:3579272 (GRCh38)
Y:3447313 (GRCh37)
Canonical SPDI:: NC_000024.10:3579271:G:T
Gene:: TGIF2LY (Varview)
Functional Consequence:: coding_sequence_variant,stop_gained
Validated:: by frequency
MAF:: T=0.00001/1 (GnomAD_exomes)
HGVS:: NC_000024.10:g.3579272G>T, NC_000024.9:g.3447313G>T, NM_139214.3:c.28G>T, NM_139214.2:c.28G>T, NP_631960.1:p.Glu10Ter

Select item 14155986775.

rs1415598677 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: Y:3579333 (GRCh38)
Y:3447374 (GRCh37)
Canonical SPDI:: NC_000024.10:3579332:C:G
Gene:: TGIF2LY (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant
Validated:: by frequency
MAF:: G=0.00002/1 (GnomAD_exomes)
HGVS:: NC_000024.10:g.3579333C>G, NC_000024.9:g.3447374C>G, NM_139214.3:c.89C>G, NM_139214.2:c.89C>G, NP_631960.1:p.Thr30Ser

Select item 14143640236.

rs1414364023 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAAAA>-,AAAA,AAAAA,AAAAAAA,AAAAAAAA [Show Flanks]
Chromosome:: Y:3578586 (GRCh38)
Y:3446627 (GRCh37)
Canonical SPDI:: NC_000024.10:3578566:AAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA,NC_000024.10:3578566:AAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAA,NC_000024.10:3578566:AAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAA,NC_000024.10:3578566:AAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000024.10:3578566:AAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAA
Gene:: TGIF2LY (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by cluster
HGVS:: NC_000024.10:g.3578586_3578591del, NC_000024.10:g.3578590_3578591del, NC_000024.10:g.3578591del, NC_000024.10:g.3578591dup, NC_000024.10:g.3578590_3578591dup, NC_000024.9:g.3446627_3446632del, NC_000024.9:g.3446631_3446632del, NC_000024.9:g.3446632del, NC_000024.9:g.3446632dup, NC_000024.9:g.3446631_3446632dup

Select item 14122683037.

rs1412268303 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: Y:3579513 (GRCh38)
Y:3447554 (GRCh37)
Canonical SPDI:: NC_000024.10:3579512:C:A
Gene:: TGIF2LY (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant
Validated:: by frequency
MAF:: A=0.00001/1 (GnomAD_exomes)
HGVS:: NC_000024.10:g.3579513C>A, NC_000024.9:g.3447554C>A, NM_139214.3:c.269C>A, NM_139214.2:c.269C>A, NP_631960.1:p.Thr90Asn

Select item 14006234968.

rs1400623496 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: Y:3579500 (GRCh38)
Y:3447541 (GRCh37)
Canonical SPDI:: NC_000024.10:3579499:C:G
Gene:: TGIF2LY (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant
Validated:: by frequency
MAF:: G=0.00001/1 (GnomAD_exomes)
HGVS:: NC_000024.10:g.3579500C>G, NC_000024.9:g.3447541C>G, NM_139214.3:c.256C>G, NM_139214.2:c.256C>G, NP_631960.1:p.Leu86Val

Select item 13923628719.

rs1392362871 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: Y:3579702 (GRCh38)
Y:3447743 (GRCh37)
Canonical SPDI:: NC_000024.10:3579701:T:G
Gene:: TGIF2LY (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant
Validated:: by frequency
MAF:: G=0.00001/1 (GnomAD_exomes)
HGVS:: NC_000024.10:g.3579702T>G, NC_000024.9:g.3447743T>G, NM_139214.3:c.458T>G, NM_139214.2:c.458T>G, NP_631960.1:p.Met153Arg

Select item 136059544710.

rs1360595447 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: Y:3579521 (GRCh38)
Y:3447562 (GRCh37)
Canonical SPDI:: NC_000024.10:3579520:T:C
Gene:: TGIF2LY (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant
Validated:: by frequency
MAF:: C=0.00001/1 (GnomAD_exomes)
HGVS:: NC_000024.10:g.3579521T>C, NC_000024.9:g.3447562T>C, NM_139214.3:c.277T>C, NM_139214.2:c.277T>C, NP_631960.1:p.Ser93Pro

Select item 135311352011.

rs1353113520 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: Y:3579738 (GRCh38)
Y:3447779 (GRCh37)
Canonical SPDI:: NC_000024.10:3579737:C:G
Gene:: TGIF2LY (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant
Validated:: by frequency
MAF:: G=0.00003/2 (GnomAD_exomes)
HGVS:: NC_000024.10:g.3579738C>G, NC_000024.9:g.3447779C>G, NM_139214.3:c.494C>G, NM_139214.2:c.494C>G, NP_631960.1:p.Ala165Gly

Select item 132726948412.

rs1327269484 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: Y:3580288 (GRCh38)
Y:3448329 (GRCh37)
Canonical SPDI:: NC_000024.10:3580287:A:G
Gene:: TGIF2LY (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by cluster
MAF:: G=0.00438/7 (1000Genomes)
G=0.00865/260 (GnomAD)
HGVS:: NC_000024.10:g.3580288A>G, NC_000024.9:g.3448329A>G

Select item 131836410013.

rs1318364100 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: Y:3579243 (GRCh38)
Y:3447284 (GRCh37)
Canonical SPDI:: NC_000024.10:3579242:A:C
Gene:: TGIF2LY (Varview)
Functional Consequence:: 5_prime_UTR_variant
Validated:: by frequency
MAF:: C=0.00001/1 (GnomAD_exomes)
HGVS:: NC_000024.10:g.3579243A>C, NC_000024.9:g.3447284A>C, NM_139214.3:c.-2A>C, NM_139214.2:c.-2A>C

Select item 128678228714.

rs1286782287 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: Y:3579698 (GRCh38)
Y:3447739 (GRCh37)
Canonical SPDI:: NC_000024.10:3579697:A:C
Gene:: TGIF2LY (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant
Validated:: by frequency
MAF:: C=0.00001/1 (GnomAD_exomes)
HGVS:: NC_000024.10:g.3579698A>C, NC_000024.9:g.3447739A>C, NM_139214.3:c.454A>C, NM_139214.2:c.454A>C, NP_631960.1:p.Thr152Pro

Select item 127587926615.

rs1275879266 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: Y:3579539 (GRCh38)
Y:3447580 (GRCh37)
Canonical SPDI:: NC_000024.10:3579538:A:C
Gene:: TGIF2LY (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant
Validated:: by frequency
MAF:: C=0.00001/1 (GnomAD_exomes)
HGVS:: NC_000024.10:g.3579539A>C, NC_000024.9:g.3447580A>C, NM_139214.3:c.295A>C, NM_139214.2:c.295A>C, NP_631960.1:p.Asn99His

Select item 126968464116.

rs1269684641 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: Y:3579635 (GRCh38)
Y:3447676 (GRCh37)
Canonical SPDI:: NC_000024.10:3579634:C:T
Gene:: TGIF2LY (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant
Validated:: by frequency
MAF:: T=0.00001/1 (GnomAD_exomes)
HGVS:: NC_000024.10:g.3579635C>T, NC_000024.9:g.3447676C>T, NM_139214.3:c.391C>T, NM_139214.2:c.391C>T, NP_631960.1:p.His131Tyr

Select item 126417414017.

rs1264174140 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: Y:3579457 (GRCh38)
Y:3447498 (GRCh37)
Canonical SPDI:: NC_000024.10:3579456:G:C
Gene:: TGIF2LY (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant
Validated:: by frequency
MAF:: C=0.00001/1 (GnomAD_exomes)
HGVS:: NC_000024.10:g.3579457G>C, NC_000024.9:g.3447498G>C, NM_139214.3:c.213G>C, NM_139214.2:c.213G>C, NP_631960.1:p.Lys71Asn

Select item 123805403118.

rs1238054031 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: Y:3579806 (GRCh38)
Y:3447847 (GRCh37)
Canonical SPDI:: NC_000024.10:3579805:A:C
Gene:: TGIF2LY (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency
MAF:: C=0.00001/1 (GnomAD_exomes)
HGVS:: NC_000024.10:g.3579806A>C, NC_000024.9:g.3447847A>C, NM_139214.3:c.*4A>C, NM_139214.2:c.*4A>C

Select item 123798611119.

rs1237986111 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: Y:3579740 (GRCh38)
Y:3447781 (GRCh37)
Canonical SPDI:: NC_000024.10:3579739:A:G
Gene:: TGIF2LY (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant
Validated:: by frequency
MAF:: G=0.00003/2 (GnomAD_exomes)
HGVS:: NC_000024.10:g.3579740A>G, NC_000024.9:g.3447781A>G, NM_139214.3:c.496A>G, NM_139214.2:c.496A>G, NP_631960.1:p.Arg166Gly

Select item 123702667920.

rs1237026679 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: Y:3579263 (GRCh38)
Y:3447304 (GRCh37)
Canonical SPDI:: NC_000024.10:3579262:G:C
Gene:: TGIF2LY (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant
Validated:: by frequency
MAF:: C=0.00001/1 (GnomAD_exomes)
HGVS:: NC_000024.10:g.3579263G>C, NC_000024.9:g.3447304G>C, NM_139214.3:c.19G>C, NM_139214.2:c.19G>C, NP_631960.1:p.Gly7Arg

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