SNP Links for Gene (Select 90070) - SNP

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Links from Gene

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Select item 14913117961.

rs1491311796 [Homo sapiens]

Variant type:: DEL
Alleles:: CA>- [Show Flanks]
Chromosome:: 12:54634351 (GRCh38)
12:55028135 (GRCh37)
Canonical SPDI:: NC_000012.12:54634350:CA:
Gene:: LACRT (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
HGVS:: NC_000012.12:g.54634351_54634352del, NC_000012.11:g.55028135_55028136del

Select item 14906697012.

rs1490669701 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 12:54631425 (GRCh38)
12:55025209 (GRCh37)
Canonical SPDI:: NC_000012.12:54631424:G:C
Gene:: LACRT (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000012.12:g.54631425G>C, NC_000012.11:g.55025209G>C

Select item 14898171073.

rs1489817107 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 12:54632573 (GRCh38)
12:55026357 (GRCh37)
Canonical SPDI:: NC_000012.12:54632572:G:A
Gene:: LACRT (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000012.12:g.54632573G>A, NC_000012.11:g.55026357G>A

Select item 14897505034.

rs1489750503 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 12:54635700 (GRCh38)
12:55029484 (GRCh37)
Canonical SPDI:: NC_000012.12:54635699:C:G
Gene:: LACRT (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000008/2 (TOPMED)
HGVS:: NC_000012.12:g.54635700C>G, NC_000012.11:g.55029484C>G

Select item 14892514875.

rs1489251487 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 12:54634554 (GRCh38)
12:55028338 (GRCh37)
Canonical SPDI:: NC_000012.12:54634553:A:C
Gene:: LACRT (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000011/3 (TOPMED)
C=0.000029/4 (GnomAD)
HGVS:: NC_000012.12:g.54634554A>C, NC_000012.11:g.55028338A>C

Select item 14889561426.

rs1488956142 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 12:54632598 (GRCh38)
12:55026382 (GRCh37)
Canonical SPDI:: NC_000012.12:54632597:A:T
Gene:: LACRT (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000012.12:g.54632598A>T, NC_000012.11:g.55026382A>T

Select item 14883107727.

rs1488310772 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G,T [Show Flanks]
Chromosome:: 12:54633145 (GRCh38)
12:55026929 (GRCh37)
Canonical SPDI:: NC_000012.12:54633144:A:G,NC_000012.12:54633144:A:T
Gene:: LACRT (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
G=0.000004/1 (GnomAD_exomes)
G=0.000007/1 (GnomAD)
HGVS:: NC_000012.12:g.54633145A>G, NC_000012.12:g.54633145A>T, NC_000012.11:g.55026929A>G, NC_000012.11:g.55026929A>T

Select item 14882750378.

rs1488275037 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 12:54633483 (GRCh38)
12:55027267 (GRCh37)
Canonical SPDI:: NC_000012.12:54633482:C:G
Gene:: LACRT (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000008/2 (TOPMED)
G=0.000021/3 (GnomAD)
HGVS:: NC_000012.12:g.54633483C>G, NC_000012.11:g.55027267C>G

Select item 14882413049.

rs1488241304 [Homo sapiens]

Variant type:: DELINS
Alleles:: CTGG>- [Show Flanks]
Chromosome:: 12:54635961 (GRCh38)
12:55029745 (GRCh37)
Canonical SPDI:: NC_000012.12:54635958:GGCTGG:GG
Gene:: LACRT (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GG=0.000224/1 (ALFA)
-=0.000007/1 (GnomAD)
-=0.000223/1 (Estonian)
HGVS:: NC_000012.12:g.54635961_54635964del, NC_000012.11:g.55029745_55029748del

Select item 148754487110.

rs1487544871 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 12:54631208 (GRCh38)
12:55024992 (GRCh37)
Canonical SPDI:: NC_000012.12:54631207:G:C
Gene:: LACRT (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000012.12:g.54631208G>C, NC_000012.11:g.55024992G>C

Select item 148734909611.

rs1487349096 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 12:54631530 (GRCh38)
12:55025314 (GRCh37)
Canonical SPDI:: NC_000012.12:54631529:C:A,NC_000012.12:54631529:C:T
Gene:: LACRT (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000012.12:g.54631530C>A, NC_000012.12:g.54631530C>T, NC_000012.11:g.55025314C>A, NC_000012.11:g.55025314C>T

Select item 148732325912.

rs1487323259 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 12:54632101 (GRCh38)
12:55025885 (GRCh37)
Canonical SPDI:: NC_000012.12:54632100:A:G
Gene:: LACRT (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000012.12:g.54632101A>G, NC_000012.11:g.55025885A>G

Select item 148499492913.

rs1484994929 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 12:54635740 (GRCh38)
12:55029524 (GRCh37)
Canonical SPDI:: NC_000012.12:54635739:A:G
Gene:: LACRT (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency
MAF:: G=0.000007/1 (GnomAD)
HGVS:: NC_000012.12:g.54635740A>G, NC_000012.11:g.55029524A>G

Select item 148474797714.

rs1484747977 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 12:54636855 (GRCh38)
12:55030639 (GRCh37)
Canonical SPDI:: NC_000012.12:54636854:C:T
Gene:: LACRT (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000008/2 (TOPMED)
HGVS:: NC_000012.12:g.54636855C>T, NC_000012.11:g.55030639C>T

Select item 148245463815.

rs1482454638 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 12:54635530 (GRCh38)
12:55029314 (GRCh37)
Canonical SPDI:: NC_000012.12:54635529:T:C
Gene:: LACRT (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000012.12:g.54635530T>C, NC_000012.11:g.55029314T>C

Select item 148173538416.

rs1481735384 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 12:54633856 (GRCh38)
12:55027640 (GRCh37)
Canonical SPDI:: NC_000012.12:54633855:G:T
Gene:: LACRT (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000011/3 (TOPMED)
HGVS:: NC_000012.12:g.54633856G>T, NC_000012.11:g.55027640G>T

Select item 148160977717.

rs1481609777 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 12:54636864 (GRCh38)
12:55030648 (GRCh37)
Canonical SPDI:: NC_000012.12:54636863:G:A
Gene:: LACRT (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000012.12:g.54636864G>A, NC_000012.11:g.55030648G>A

Select item 148104607418.

rs1481046074 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 12:54631167 (GRCh38)
12:55024951 (GRCh37)
Canonical SPDI:: NC_000012.12:54631166:C:G
Gene:: LACRT (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000162/3 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000014/2 (GnomAD)
G=0.00067/3 (Estonian)
HGVS:: NC_000012.12:g.54631167C>G, NC_000012.11:g.55024951C>G

Select item 148087422519.

rs1480874225 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 12:54634101 (GRCh38)
12:55027885 (GRCh37)
Canonical SPDI:: NC_000012.12:54634100:C:A
Gene:: LACRT (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000011/3 (TOPMED)
HGVS:: NC_000012.12:g.54634101C>A, NC_000012.11:g.55027885C>A

Select item 148083774820.

rs1480837748 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 12:54630497 (GRCh38)
12:55024281 (GRCh37)
Canonical SPDI:: NC_000012.12:54630496:T:C
Gene:: LACRT (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency
MAF:: C=0.000007/1 (GnomAD)
HGVS:: NC_000012.12:g.54630497T>C, NC_000012.11:g.55024281T>C