SNP Links for Gene (Select 8764) - SNP

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Items: 1 to 20 of 1000

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Select item 14909978611.

rs1490997861 [Homo sapiens]

Variant type:: DELINS
Alleles:: CCCGGGATGGGGGC>- [Show Flanks]
Chromosome:: 1:2554133 (GRCh38)
1:2485572 (GRCh37)
Canonical SPDI:: NC_000001.11:2554128:GGGCCCCGGGATGGGGGC:GGGC
Gene:: TNFRSF14 (Varview), TNFRSF14-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: GGGC=0.000071/1 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.2554133_2554146del, NC_000001.10:g.2485572_2485585del, NG_047096.1:g.2769_2782del, NT_187515.1:g.105323_105336del, NR_037844.2:n.2163_2176del

Select item 14908000992.

rs1490800099 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:2558866 (GRCh38)
1:2490305 (GRCh37)
Canonical SPDI:: NC_000001.11:2558865:C:T
Gene:: TNFRSF14 (Varview), TNFRSF14-AS1 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by cluster
MAF:: T=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.2558866C>T, NC_000001.10:g.2490305C>T, NG_047096.1:g.7502C>T, NT_187515.1:g.110056C>T

Select item 14906408343.

rs1490640834 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G,T [Show Flanks]
Chromosome:: 1:2556551 (GRCh38)
1:2487990 (GRCh37)
Canonical SPDI:: NC_000001.11:2556550:C:A,NC_000001.11:2556550:C:G,NC_000001.11:2556550:C:T
Gene:: TNFRSF14 (Varview), TNFRSF14-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,5_prime_UTR_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
A=0.00002/3 (GnomAD_exomes)
HGVS:: NC_000001.11:g.2556551C>A, NC_000001.11:g.2556551C>G, NC_000001.11:g.2556551C>T, NC_000001.10:g.2487990C>A, NC_000001.10:g.2487990C>G, NC_000001.10:g.2487990C>T, NG_047096.1:g.5187C>A, NG_047096.1:g.5187C>G, NG_047096.1:g.5187C>T, NM_003820.4:c.-114C>A, NM_003820.4:c.-114C>G, NM_003820.4:c.-114C>T, NM_003820.3:c.-114C>A, NM_003820.3:c.-114C>G, NM_003820.3:c.-114C>T, NM_003820.2:c.-114C>A, NM_003820.2:c.-114C>G, NM_003820.2:c.-114C>T, NM_001297605.2:c.-114C>A, NM_001297605.2:c.-114C>G, NM_001297605.2:c.-114C>T, NM_001297605.1:c.-114C>A, NM_001297605.1:c.-114C>G, NM_001297605.1:c.-114C>T, NT_187515.1:g.107741C>A, NT_187515.1:g.107741C>G, NT_187515.1:g.107741C>T, XM_006711019.3:c.-114C>A, XM_006711019.3:c.-114C>G, XM_006711019.3:c.-114C>T, NR_037844.2:n.181G>T, NR_037844.2:n.181G>C, NR_037844.2:n.181G>A, NR_037844.1:n.181G>T, NR_037844.1:n.181G>C, NR_037844.1:n.181G>A, XM_047433423.1:c.-114C>A, XM_047433423.1:c.-114C>G, XM_047433423.1:c.-114C>T, XM_047433421.1:c.-114C>A, XM_047433421.1:c.-114C>G, XM_047433421.1:c.-114C>T

Select item 14905039264.

rs1490503926 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 1:2553844 (GRCh38)
1:2485283 (GRCh37)
Canonical SPDI:: NC_000001.11:2553843:T:G
Gene:: TNFRSF14 (Varview), TNFRSF14-AS1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.2553844T>G, NC_000001.10:g.2485283T>G, NG_047096.1:g.2480T>G, NT_187515.1:g.105034T>G

Select item 14903306525.

rs1490330652 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:2559446 (GRCh38)
1:2490885 (GRCh37)
Canonical SPDI:: NC_000001.11:2559445:G:A
Gene:: TNFRSF14 (Varview)
Functional Consequence:: 3_prime_UTR_variant,intron_variant,5_prime_UTR_variant
Validated:: by frequency
MAF:: A=0.000007/1 (GnomAD_exomes)
HGVS:: NC_000001.11:g.2559446G>A, NC_000001.10:g.2490885G>A, NG_047096.1:g.8082G>A, NT_187515.1:g.110636G>A, XM_011542383.3:c.-306G>A, XM_011542383.2:c.-306G>A, XM_011542383.1:c.-306G>A, XM_047433423.1:c.*312G>A

Select item 14903258476.

rs1490325847 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:2558316 (GRCh38)
1:2489755 (GRCh37)
Canonical SPDI:: NC_000001.11:2558315:G:A
Gene:: TNFRSF14 (Varview), TNFRSF14-AS1 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency
MAF:: A=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000001.11:g.2558316G>A, NC_000001.10:g.2489755G>A, NG_047096.1:g.6952G>A, NT_187515.1:g.109506G>A

Select item 14900992437.

rs1490099243 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:2559032 (GRCh38)
1:2490471 (GRCh37)
Canonical SPDI:: NC_000001.11:2559031:C:T
Gene:: TNFRSF14 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,coding_sequence_variant,synonymous_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.2559032C>T, NC_000001.10:g.2490471C>T, NG_047096.1:g.7668C>T, NT_187515.1:g.110222C>T, XM_047433423.1:c.456C>T

Select item 14899134888.

rs1489913488 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 1:2564492 (GRCh38)
1:2495931 (GRCh37)
Canonical SPDI:: NC_000001.11:2564491:C:A
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000019/5 (TOPMED)
A=0.000029/4 (GnomAD)
HGVS:: NC_000001.11:g.2564492C>A, NC_000001.10:g.2495931C>A, NG_047096.1:g.13128C>A, NM_003820.3:c.*1219C>A, NT_187515.1:g.115682C>A, NM_001297605.1:c.*1373C>A

Select item 14898944519.

rs1489894451 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:2565414 (GRCh38)
1:2496853 (GRCh37)
Canonical SPDI:: NC_000001.11:2565413:G:A
Gene:: LOC100996583 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000008/2 (TOPMED)
A=0.000071/1 (TOMMO)
HGVS:: NC_000001.11:g.2565414G>A, NC_000001.10:g.2496853G>A, NG_047096.1:g.14050G>A, NM_003820.3:c.*2141G>A, NT_187515.1:g.116604G>A, NM_001297605.1:c.*2295G>A

Select item 148984921910.

rs1489849219 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->C [Show Flanks]
Chromosome:: 1:2559076 (GRCh38)
1:2490516 (GRCh37)
Canonical SPDI:: NC_000001.11:2559076:CC:CCC
Gene:: TNFRSF14 (Varview)
Functional Consequence:: frameshift_variant,intron_variant,upstream_transcript_variant,coding_sequence_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CCC=0./0 (ALFA)
C=0.000008/1 (GnomAD_exomes)
C=0.000008/2 (TOPMED)
C=0.000071/1 (TOMMO)
HGVS:: NC_000001.11:g.2559078dup, NC_000001.10:g.2490517dup, NG_047096.1:g.7714dup, NT_187515.1:g.110268dup, XM_047433423.1:c.502dup, XP_047289379.1:p.Gln168fs

Select item 148982355011.

rs1489823550 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:2556762 (GRCh38)
1:2488201 (GRCh37)
Canonical SPDI:: NC_000001.11:2556761:C:T
Gene:: TNFRSF14 (Varview), TNFRSF14-AS1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
HGVS:: NC_000001.11:g.2556762C>T, NC_000001.10:g.2488201C>T, NG_047096.1:g.5398C>T, NT_187515.1:g.107952C>T

Select item 148924736812.

rs1489247368 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 1:2559705 (GRCh38)
1:2491144 (GRCh37)
Canonical SPDI:: NC_000001.11:2559704:G:C
Gene:: TNFRSF14 (Varview)
Functional Consequence:: 3_prime_UTR_variant,intron_variant,5_prime_UTR_variant
Validated:: by frequency,by cluster
MAF:: C=0.00004/1 (TOMMO)
HGVS:: NC_000001.11:g.2559705G>C, NC_000001.10:g.2491144G>C, NG_047096.1:g.8341G>C, NT_187515.1:g.110895G>C, XM_011542383.3:c.-47G>C, XM_011542383.2:c.-47G>C, XM_011542383.1:c.-47G>C, XM_047433423.1:c.*571G>C

Select item 148893307313.

rs1488933073 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:2554760 (GRCh38)
1:2486199 (GRCh37)
Canonical SPDI:: NC_000001.11:2554759:C:T
Gene:: TNFRSF14 (Varview), TNFRSF14-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.2554760C>T, NC_000001.10:g.2486199C>T, NG_047096.1:g.3396C>T, NT_187515.1:g.105950C>T, NR_037844.2:n.1972G>A

Select item 148877918914.

rs1488779189 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:2556306 (GRCh38)
1:2487745 (GRCh37)
Canonical SPDI:: NC_000001.11:2556305:G:A
Gene:: TNFRSF14 (Varview), TNFRSF14-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.00003/8 (TOPMED)
A=0.000071/10 (GnomAD)
HGVS:: NC_000001.11:g.2556306G>A, NC_000001.10:g.2487745G>A, NG_047096.1:g.4942G>A, NT_187515.1:g.107496G>A, NR_037844.2:n.426C>T, NR_037844.1:n.426C>T

Select item 148845657415.

rs1488456574 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:2561099 (GRCh38)
1:2492538 (GRCh37)
Canonical SPDI:: NC_000001.11:2561098:T:C
Gene:: TNFRSF14 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.2561099T>C, NC_000001.10:g.2492538T>C, NG_047096.1:g.9735T>C, NT_187515.1:g.112289T>C

Select item 148813646516.

rs1488136465 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 1:2563821 (GRCh38)
1:2495260 (GRCh37)
Canonical SPDI:: NC_000001.11:2563820:C:G
Gene:: TNFRSF14 (Varview)
Functional Consequence:: 3_prime_UTR_variant,genic_downstream_transcript_variant
HGVS:: NC_000001.11:g.2563821C>G, NC_000001.10:g.2495260C>G, NG_047096.1:g.12457C>G, NM_003820.4:c.*548C>G, NM_003820.3:c.*548C>G, NM_003820.2:c.*548C>G, NM_001297605.2:c.*702C>G, NM_001297605.1:c.*702C>G, NT_187515.1:g.115011C>G, XM_011542383.3:c.*548C>G, XM_011542383.2:c.*548C>G, XM_011542383.1:c.*548C>G, XM_006711019.3:c.*702C>G, XM_006711019.2:c.*702C>G, XM_006711019.1:c.*702C>G, XM_047433414.1:c.*548C>G, XM_047433412.1:c.*548C>G, XM_047433416.1:c.*548C>G, XM_047433419.1:c.*548C>G, XM_047433418.1:c.*548C>G, XM_047433413.1:c.*548C>G

Select item 148785191217.

rs1487851912 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:2558125 (GRCh38)
1:2489564 (GRCh37)
Canonical SPDI:: NC_000001.11:2558124:T:C
Gene:: TNFRSF14 (Varview), TNFRSF14-AS1 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.2558125T>C, NC_000001.10:g.2489564T>C, NG_047096.1:g.6761T>C, NT_187515.1:g.109315T>C

Select item 148761362718.

rs1487613627 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:2561660 (GRCh38)
1:2493099 (GRCh37)
Canonical SPDI:: NC_000001.11:2561659:C:T
Gene:: TNFRSF14 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant,coding_sequence_variant,3_prime_UTR_variant,missense_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000001.11:g.2561660C>T, NC_000001.10:g.2493099C>T, NG_047096.1:g.10296C>T, NT_187515.1:g.112850C>T, XM_011542383.3:c.485C>T, XM_011542383.2:c.485C>T, XM_011542383.1:c.485C>T, XM_047433421.1:c.*136C>T, XM_047433422.1:c.*136C>T, XP_011540685.1:p.Pro162Leu

Select item 148760954519.

rs1487609545 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:2559917 (GRCh38)
1:2491356 (GRCh37)
Canonical SPDI:: NC_000001.11:2559916:C:T
Gene:: TNFRSF14 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,coding_sequence_variant,synonymous_variant,downstream_transcript_variant,missense_variant
HGVS:: NC_000001.11:g.2559917C>T, NC_000001.10:g.2491356C>T, NG_047096.1:g.8553C>T, NM_003820.4:c.399C>T, NM_003820.3:c.399C>T, NM_003820.2:c.399C>T, NM_001297605.2:c.399C>T, NM_001297605.1:c.399C>T, NT_187515.1:g.111107C>T, XM_011542383.3:c.166C>T, XM_011542383.2:c.166C>T, XM_011542383.1:c.166C>T, XM_006711019.3:c.399C>T, XM_006711019.2:c.399C>T, XM_006711019.1:c.399C>T, XM_047433414.1:c.399C>T, XM_047433412.1:c.399C>T, XM_047433419.1:c.399C>T, XM_047433418.1:c.399C>T, XM_047433413.1:c.399C>T, XM_047433421.1:c.399C>T, XM_047433416.1:c.399C>T, XM_047433422.1:c.399C>T, XP_011540685.1:p.Pro56Ser

Select item 148742204020.

rs1487422040 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 1:2556237 (GRCh38)
1:2487676 (GRCh37)
Canonical SPDI:: NC_000001.11:2556236:G:A,NC_000001.11:2556236:G:T
Gene:: TNFRSF14 (Varview), TNFRSF14-AS1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,5_prime_UTR_variant,non_coding_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0.000057/15 (TOPMED)
A=0.000064/9 (GnomAD)
A=0.000156/1 (1000Genomes)
HGVS:: NC_000001.11:g.2556237G>A, NC_000001.11:g.2556237G>T, NC_000001.10:g.2487676G>A, NC_000001.10:g.2487676G>T, NG_047096.1:g.4873G>A, NG_047096.1:g.4873G>T, NT_187515.1:g.107427G>A, NT_187515.1:g.107427G>T, NR_037844.2:n.495C>T, NR_037844.2:n.495C>A, NR_037844.1:n.495C>T, NR_037844.1:n.495C>A, XM_047433414.1:c.-105G>A, XM_047433414.1:c.-105G>T, XM_047433412.1:c.-96G>A, XM_047433412.1:c.-96G>T, XM_047433422.1:c.-96G>A, XM_047433422.1:c.-96G>T

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