SNP Links for Gene (Select 8741) - SNP

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Select item 14896752911.

rs1489675291 [Homo sapiens]

Variant type:: DELINS
Alleles:: A>- [Show Flanks]
Chromosome:: 17:7560579 (GRCh38)
17:7463896 (GRCh37)
Canonical SPDI:: NC_000017.11:7560578:AAA:AA
Gene:: TNFSF13 (Varview), SENP3 (Varview), TNFSF12-TNFSF13 (Varview), SENP3-EIF4A1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AA=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000007/1 (GnomAD)
HGVS:: NC_000017.11:g.7560581del, NC_000017.10:g.7463898del, NG_029949.1:g.7290del

Select item 14896640802.

rs1489664080 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 17:7561685 (GRCh38)
17:7465002 (GRCh37)
Canonical SPDI:: NC_000017.11:7561684:G:C
Gene:: TNFSF13 (Varview), SENP3 (Varview), TNFSF12-TNFSF13 (Varview), SENP3-EIF4A1 (Varview)
Functional Consequence:: downstream_transcript_variant,2KB_upstream_variant,500B_downstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000017.11:g.7561685G>C, NC_000017.10:g.7465002G>C, NG_029949.1:g.8394G>C

Select item 14890673003.

rs1489067300 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 17:7556295 (GRCh38)
17:7459612 (GRCh37)
Canonical SPDI:: NC_000017.11:7556294:C:T
Gene:: TNFSF13 (Varview), TNFSF12 (Varview), TNFSF12-TNFSF13 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000019/5 (TOPMED)
HGVS:: NC_000017.11:g.7556295C>T, NC_000017.10:g.7459612C>T, NG_052944.1:g.12238C>T, NG_029949.1:g.3004C>T

Select item 14887512864.

rs1488751286 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: 17:7560089 (GRCh38)
17:7463406 (GRCh37)
Canonical SPDI:: NC_000017.11:7560088:T:C,NC_000017.11:7560088:T:G
Gene:: TNFSF13 (Varview), SENP3 (Varview), TNFSF12-TNFSF13 (Varview), SENP3-EIF4A1 (Varview)
Functional Consequence:: coding_sequence_variant,2KB_upstream_variant,non_coding_transcript_variant,synonymous_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
G=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000017.11:g.7560089T>C, NC_000017.11:g.7560089T>G, NC_000017.10:g.7463406T>C, NC_000017.10:g.7463406T>G, NG_029949.1:g.6798T>C, NG_029949.1:g.6798T>G, NM_003808.4:c.426T>C, NM_003808.4:c.426T>G, NM_003808.3:c.426T>C, NM_003808.3:c.426T>G, NM_172088.4:c.426T>C, NM_172088.4:c.426T>G, NM_172088.3:c.426T>C, NM_172088.3:c.426T>G, NM_172088.2:c.426T>C, NM_172088.2:c.426T>G, NM_172087.3:c.378T>C, NM_172087.3:c.378T>G, NM_172087.2:c.378T>C, NM_172087.2:c.378T>G, NR_073490.3:n.589T>C, NR_073490.3:n.589T>G, NR_073490.2:n.1047T>C, NR_073490.2:n.1047T>G, NM_001198622.2:c.345T>C, NM_001198622.2:c.345T>G, NM_001198622.1:c.345T>C, NM_001198622.1:c.345T>G, NM_001198623.2:c.342T>C, NM_001198623.2:c.342T>G, NM_001198623.1:c.342T>C, NM_001198623.1:c.342T>G, NM_001198624.2:c.291T>C, NM_001198624.2:c.291T>G, NM_001198624.1:c.291T>C, NM_001198624.1:c.291T>G, NM_172089.4:c.666T>C, NM_172089.4:c.666T>G, NM_172089.3:c.666T>C, NM_172089.3:c.666T>G

Select item 14887412725.

rs1488741272 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 17:7560165 (GRCh38)
17:7463482 (GRCh37)
Canonical SPDI:: NC_000017.11:7560164:C:T
Gene:: TNFSF13 (Varview), SENP3 (Varview), TNFSF12-TNFSF13 (Varview), SENP3-EIF4A1 (Varview)
Functional Consequence:: coding_sequence_variant,stop_gained,2KB_upstream_variant,non_coding_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000008/2 (TOPMED)
HGVS:: NC_000017.11:g.7560165C>T, NC_000017.10:g.7463482C>T, NG_029949.1:g.6874C>T, NM_003808.4:c.502C>T, NM_003808.3:c.502C>T, NM_172088.4:c.502C>T, NM_172088.3:c.502C>T, NM_172088.2:c.502C>T, NM_172087.3:c.454C>T, NM_172087.2:c.454C>T, NR_073490.3:n.665C>T, NR_073490.2:n.1123C>T, NM_001198622.2:c.421C>T, NM_001198622.1:c.421C>T, NM_001198623.2:c.418C>T, NM_001198623.1:c.418C>T, NM_001198624.2:c.367C>T, NM_001198624.1:c.367C>T, NM_172089.4:c.742C>T, NM_172089.3:c.742C>T, NP_003799.1:p.Gln168Ter, NP_742085.1:p.Gln168Ter, NP_742084.1:p.Gln152Ter, NP_001185551.1:p.Gln141Ter, NP_001185552.1:p.Gln140Ter, NP_001185553.1:p.Gln123Ter, NP_742086.1:p.Gln248Ter

Select item 14886915996.

rs1488691599 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 17:7559776 (GRCh38)
17:7463093 (GRCh37)
Canonical SPDI:: NC_000017.11:7559775:A:T
Gene:: TNFSF13 (Varview), TNFSF12-TNFSF13 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency
MAF:: T=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000017.11:g.7559776A>T, NC_000017.10:g.7463093A>T, NG_052944.1:g.15719A>T, NG_029949.1:g.6485A>T

Select item 14880444447.

rs1488044444 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 17:7560527 (GRCh38)
17:7463844 (GRCh37)
Canonical SPDI:: NC_000017.11:7560526:G:A,NC_000017.11:7560526:G:C
Gene:: TNFSF13 (Varview), SENP3 (Varview), TNFSF12-TNFSF13 (Varview), SENP3-EIF4A1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
A=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000017.11:g.7560527G>A, NC_000017.11:g.7560527G>C, NC_000017.10:g.7463844G>A, NC_000017.10:g.7463844G>C, NG_029949.1:g.7236G>A, NG_029949.1:g.7236G>C

Select item 14866942368.

rs1486694236 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 17:7556788 (GRCh38)
17:7460105 (GRCh37)
Canonical SPDI:: NC_000017.11:7556787:G:A
Gene:: TNFSF13 (Varview), TNFSF12 (Varview), TNFSF12-TNFSF13 (Varview)
Functional Consequence:: coding_sequence_variant,2KB_upstream_variant,non_coding_transcript_variant,synonymous_variant,upstream_transcript_variant
Clinical significance:: likely-benign
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000017.11:g.7556788G>A, NC_000017.10:g.7460105G>A, NG_052944.1:g.12731G>A, NM_003809.3:c.384G>A, NM_003809.2:c.384G>A, NR_037146.2:n.719G>A, NR_037146.1:n.719G>A, NG_029949.1:g.3497G>A, NM_172089.4:c.384G>A, NM_172089.3:c.384G>A, NM_153012.1:c.*218G>A

Select item 14853813819.

rs1485381381 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAATA>- [Show Flanks]
Chromosome:: 17:7561585 (GRCh38)
17:7464902 (GRCh37)
Canonical SPDI:: NC_000017.11:7561579:AAATAAAATA:AAATA
Gene:: TNFSF13 (Varview), SENP3 (Varview), TNFSF12-TNFSF13 (Varview), SENP3-EIF4A1 (Varview)
Functional Consequence:: 2KB_upstream_variant,non_coding_transcript_variant,upstream_transcript_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAATAAAATA=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000007/1 (GnomAD)
HGVS:: NC_000017.11:g.7561580AAATA[1], NC_000017.10:g.7464897AAATA[1], NG_029949.1:g.8289AAATA[1], NM_003808.4:c.*747AAATA[1], NM_003808.3:c.*747AAATA[1], NM_172088.4:c.*575AAATA[1], NM_172088.3:c.*575AAATA[1], NM_172088.2:c.*575AAATA[1], NM_172087.3:c.*747AAATA[1], NM_172087.2:c.*747AAATA[1], NR_073490.3:n.1663AAATA[1], NR_073490.2:n.2121AAATA[1], NM_001198622.2:c.*747AAATA[1], NM_001198622.1:c.*747AAATA[1], NM_001198623.2:c.*747AAATA[1], NM_001198623.1:c.*747AAATA[1], NM_001198624.2:c.*747AAATA[1], NM_001198624.1:c.*747AAATA[1], NM_172089.4:c.*747AAATA[1], NM_172089.3:c.*747AAATA[1]

Select item 148493781110.

rs1484937811 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->GCTGGAACTGGTGTCGGAGG [Show Flanks]
Chromosome:: 17:7561473 (GRCh38)
17:7464791 (GRCh37)
Canonical SPDI:: NC_000017.11:7561473:GGGCTGGAACTGGTGTCGGAGG:GGGCTGGAACTGGTGTCGGAGGGCTGGAACTGGTGTCGGAGG
Gene:: TNFSF13 (Varview), SENP3 (Varview), TNFSF12-TNFSF13 (Varview), SENP3-EIF4A1 (Varview)
Functional Consequence:: 2KB_upstream_variant,non_coding_transcript_variant,upstream_transcript_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: GGGCTGGAACTGGTGTCGGAGGGCTGGAACTGGTGTCGGAGG=0./0 (ALFA)
GGGCTGGAACTGGTGTCGGA=0.000007/1 (GnomAD)
HGVS:: NC_000017.11:g.7561476_7561495dup, NC_000017.10:g.7464793_7464812dup, NG_029949.1:g.8185_8204dup, NM_003808.4:c.*643_*662dup, NM_003808.3:c.*643_*662dup, NM_172088.4:c.*471_*490dup, NM_172088.3:c.*471_*490dup, NM_172088.2:c.*471_*490dup, NM_172087.3:c.*643_*662dup, NM_172087.2:c.*643_*662dup, NR_073490.3:n.1559_1578dup, NR_073490.2:n.2017_2036dup, NM_001198622.2:c.*643_*662dup, NM_001198622.1:c.*643_*662dup, NM_001198623.2:c.*643_*662dup, NM_001198623.1:c.*643_*662dup, NM_001198624.2:c.*643_*662dup, NM_001198624.1:c.*643_*662dup, NM_172089.4:c.*643_*662dup, NM_172089.3:c.*643_*662dup

Select item 148486046711.

rs1484860467 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 17:7557378 (GRCh38)
17:7460695 (GRCh37)
Canonical SPDI:: NC_000017.11:7557377:C:T
Gene:: TNFSF13 (Varview), TNFSF12 (Varview), TNFSF12-TNFSF13 (Varview)
Functional Consequence:: 2KB_upstream_variant,non_coding_transcript_variant,intron_variant,3_prime_UTR_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000017.11:g.7557378C>T, NC_000017.10:g.7460695C>T, NG_052944.1:g.13321C>T, NM_003809.3:c.*28C>T, NM_003809.2:c.*28C>T, NR_037146.2:n.1113C>T, NR_037146.1:n.1113C>T, NG_029949.1:g.4087C>T, NM_153012.1:c.*612C>T

Select item 148463665812.

rs1484636658 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 17:7556856 (GRCh38)
17:7460173 (GRCh37)
Canonical SPDI:: NC_000017.11:7556855:G:A
Gene:: TNFSF13 (Varview), TNFSF12 (Varview), TNFSF12-TNFSF13 (Varview)
Functional Consequence:: coding_sequence_variant,2KB_upstream_variant,non_coding_transcript_variant,missense_variant,upstream_transcript_variant
HGVS:: NC_000017.11:g.7556856G>A, NC_000017.10:g.7460173G>A, NG_052944.1:g.12799G>A, NM_003809.3:c.452G>A, NM_003809.2:c.452G>A, NR_037146.2:n.787G>A, NR_037146.1:n.787G>A, NG_029949.1:g.3565G>A, NM_172089.4:c.452G>A, NM_172089.3:c.452G>A, NM_153012.1:c.*286G>A, NP_003800.1:p.Gly151Glu, NP_742086.1:p.Gly151Glu

Select item 148443778113.

rs1484437781 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 17:7559240 (GRCh38)
17:7462557 (GRCh37)
Canonical SPDI:: NC_000017.11:7559239:G:A
Gene:: TNFSF13 (Varview), TNFSF12-TNFSF13 (Varview)
Functional Consequence:: synonymous_variant,non_coding_transcript_variant,coding_sequence_variant,intron_variant
Validated:: by frequency
MAF:: A=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000017.11:g.7559240G>A, NC_000017.10:g.7462557G>A, NG_052944.1:g.15183G>A, NG_029949.1:g.5949G>A, NM_003808.4:c.201G>A, NM_003808.3:c.201G>A, NM_172088.4:c.201G>A, NM_172088.3:c.201G>A, NM_172088.2:c.201G>A, NM_172087.3:c.201G>A, NM_172087.2:c.201G>A, NR_073490.3:n.491G>A, NR_073490.2:n.949G>A, NM_001198622.2:c.201G>A, NM_001198622.1:c.201G>A, NM_001198623.2:c.201G>A, NM_001198623.1:c.201G>A, NM_001198624.2:c.150G>A, NM_001198624.1:c.150G>A

Select item 148440199414.

rs1484401994 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 17:7561093 (GRCh38)
17:7464410 (GRCh37)
Canonical SPDI:: NC_000017.11:7561092:T:A
Gene:: TNFSF13 (Varview), SENP3 (Varview), TNFSF12-TNFSF13 (Varview), SENP3-EIF4A1 (Varview)
Functional Consequence:: 2KB_upstream_variant,non_coding_transcript_variant,upstream_transcript_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000011/3 (TOPMED)
HGVS:: NC_000017.11:g.7561093T>A, NC_000017.10:g.7464410T>A, NG_029949.1:g.7802T>A, NM_003808.4:c.*260T>A, NM_003808.3:c.*260T>A, NM_172088.4:c.*88T>A, NM_172088.3:c.*88T>A, NM_172088.2:c.*88T>A, NM_172087.3:c.*260T>A, NM_172087.2:c.*260T>A, NR_073490.3:n.1176T>A, NR_073490.2:n.1634T>A, NM_001198622.2:c.*260T>A, NM_001198622.1:c.*260T>A, NM_001198623.2:c.*260T>A, NM_001198623.1:c.*260T>A, NM_001198624.2:c.*260T>A, NM_001198624.1:c.*260T>A, NM_172089.4:c.*260T>A, NM_172089.3:c.*260T>A

Select item 148340489315.

rs1483404893 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 17:7560565 (GRCh38)
17:7463882 (GRCh37)
Canonical SPDI:: NC_000017.11:7560564:G:C
Gene:: TNFSF13 (Varview), SENP3 (Varview), TNFSF12-TNFSF13 (Varview), SENP3-EIF4A1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000017.11:g.7560565G>C, NC_000017.10:g.7463882G>C, NG_029949.1:g.7274G>C

Select item 148288903916.

rs1482889039 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 17:7556439 (GRCh38)
17:7459756 (GRCh37)
Canonical SPDI:: NC_000017.11:7556438:G:A
Gene:: TNFSF13 (Varview), TNFSF12 (Varview), TNFSF12-TNFSF13 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000017.11:g.7556439G>A, NC_000017.10:g.7459756G>A, NG_052944.1:g.12382G>A, NG_029949.1:g.3148G>A

Select item 148244950417.

rs1482449504 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: 17:7556935 (GRCh38)
17:7460252 (GRCh37)
Canonical SPDI:: NC_000017.11:7556934:T:C,NC_000017.11:7556934:T:G
Gene:: TNFSF13 (Varview), TNFSF12 (Varview), TNFSF12-TNFSF13 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000017.11:g.7556935T>C, NC_000017.11:g.7556935T>G, NC_000017.10:g.7460252T>C, NC_000017.10:g.7460252T>G, NG_052944.1:g.12878T>C, NG_052944.1:g.12878T>G, NG_029949.1:g.3644T>C, NG_029949.1:g.3644T>G

Select item 148227051018.

rs1482270510 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 17:7560578 (GRCh38)
17:7463895 (GRCh37)
Canonical SPDI:: NC_000017.11:7560577:T:G
Gene:: TNFSF13 (Varview), SENP3 (Varview), TNFSF12-TNFSF13 (Varview), SENP3-EIF4A1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000671/3 (ALFA)
G=0.000014/2 (GnomAD)
G=0.00067/3 (Estonian)
HGVS:: NC_000017.11:g.7560578T>G, NC_000017.10:g.7463895T>G, NG_029949.1:g.7287T>G

Select item 148150514519.

rs1481505145 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 17:7558694 (GRCh38)
17:7462011 (GRCh37)
Canonical SPDI:: NC_000017.11:7558693:T:C
Gene:: TNFSF13 (Varview), TNFSF12-TNFSF13 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000019/5 (TOPMED)
HGVS:: NC_000017.11:g.7558694T>C, NC_000017.10:g.7462011T>C, NG_052944.1:g.14637T>C, NG_029949.1:g.5403T>C, NM_003808.3:c.-346T>C, NM_172088.3:c.-346T>C, NM_172087.2:c.-346T>C, NR_073490.2:n.403T>C, NM_172088.2:c.-346T>C, NM_001198622.1:c.-346T>C, NM_001198623.1:c.-346T>C

Select item 148133280920.

rs1481332809 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 17:7557888 (GRCh38)
17:7461205 (GRCh37)
Canonical SPDI:: NC_000017.11:7557887:A:T
Gene:: TNFSF13 (Varview), TNFSF12 (Varview), TNFSF12-TNFSF13 (Varview)
Functional Consequence:: downstream_transcript_variant,2KB_upstream_variant,500B_downstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000021/3 (GnomAD)
T=0.000026/7 (TOPMED)
HGVS:: NC_000017.11:g.7557888A>T, NC_000017.10:g.7461205A>T, NG_052944.1:g.13831A>T, NG_029949.1:g.4597A>T, NM_003809.2:c.*538A>T, NR_037146.1:n.1623A>T, NM_153012.1:c.*1122A>T

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