SNP Links for Gene (Select 8740) - SNP

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Select item 14915130211.

rs1491513021 [Homo sapiens]

Variant type:: DELINS
Alleles:: TT>- [Show Flanks]
Chromosome:: 19:6665821 (GRCh38)
19:6665832 (GRCh37)
Canonical SPDI:: NC_000019.10:6665819:TTT:T
Gene:: TNFSF14 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000019.10:g.6665821_6665822del, NC_000019.9:g.6665832_6665833del

Select item 14913711882.

rs1491371188 has merged into rs34381198 [Homo sapiens]

Variant type:: DELINS
Alleles:: CACACACACACACACACACACACA>-,CA,CACA,CACACA,CACACACA,CACACACACA,CACACACACACA,CACACACACACACA,CACACACACACACACA,CACACACACACACACACA,CACACACACACACACACACA,CACACACACACACACACACACA,CACACACACACACACACACACACACA,CACACACACACACACACACACACACACA,CACACACACACACACACACACACACACACA,CACACACACACACACACACACACACACACACA,CACACACACACACACACACACACACACACACACA,CACACACACACACACACACACACACACACACACACA,CACACACACACACACACACACACACACACACACACACA,CACACACACACACACACACACACACACACACACACACACA,CACACACACACACACACACACACACACACACACACACACACA,CACACACACACACACACACACACACACACACACACACACACACACACACA [Show Flanks]
Chromosome:: 19:6669751 (GRCh38)
19:6669762 (GRCh37)
Canonical SPDI:: NC_000019.10:6669737:ACACACACACACACACACACACACACACACACACACA:ACACACACACACA,NC_000019.10:6669737:ACACACACACACACACACACACACACACACACACACA:ACACACACACACACA,NC_000019.10:6669737:ACACACACACACACACACACACACACACACACACACA:ACACACACACACACACA,NC_000019.10:6669737:ACACACACACACACACACACACACACACACACACACA:ACACACACACACACACACA,NC_000019.10:6669737:ACACACACACACACACACACACACACACACACACACA:ACACACACACACACACACACA,NC_000019.10:6669737:ACACACACACACACACACACACACACACACACACACA:ACACACACACACACACACACACA,NC_000019.10:6669737:ACACACACACACACACACACACACACACACACACACA:ACACACACACACACACACACACACA,NC_000019.10:6669737:ACACACACACACACACACACACACACACACACACACA:ACACACACACACACACACACACACACA,NC_000019.10:6669737:ACACACACACACACACACACACACACACACACACACA:ACACACACACACACACACACACACACACA,NC_000019.10:6669737:ACACACACACACACACACACACACACACACACACACA:ACACACACACACACACACACACACACACACA,NC_000019.10:6669737:ACACACACACACACACACACACACACACACACACACA:ACACACACACACACACACACACACACACACACA,NC_000019.10:6669737:ACACACACACACACACACACACACACACACACACACA:ACACACACACACACACACACACACACACACACACA,NC_000019.10:6669737:ACACACACACACACACACACACACACACACACACACA:ACACACACACACACACACACACACACACACACACACACA,NC_000019.10:6669737:ACACACACACACACACACACACACACACACACACACA:ACACACACACACACACACACACACACACACACACACACACA,NC_000019.10:6669737:ACACACACACACACACACACACACACACACACACACA:ACACACACACACACACACACACACACACACACACACACACACA,NC_000019.10:6669737:ACACACACACACACACACACACACACACACACACACA:ACACACACACACACACACACACACACACACACACACACACACACA,NC_000019.10:6669737:ACACACACACACACACACACACACACACACACACACA:ACACACACACACACACACACACACACACACACACACACACACACACA,NC_000019.10:6669737:ACACACACACACACACACACACACACACACACACACA:ACACACACACACACACACACACACACACACACACACACACACACACACA,NC_000019.10:6669737:ACACACACACACACACACACACACACACACACACACA:ACACACACACACACACACACACACACACACACACACACACACACACACACA,NC_000019.10:6669737:ACACACACACACACACACACACACACACACACACACA:ACACACACACACACACACACACACACACACACACACACACACACACACACACA,NC_000019.10:6669737:ACACACACACACACACACACACACACACACACACACA:ACACACACACACACACACACACACACACACACACACACACACACACACACACACA,NC_000019.10:6669737:ACACACACACACACACACACACACACACACACACACA:ACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACA
Gene:: TNFSF14 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: ACACACACACACACA=0./0 (ALFA)
-=0.1977/762 (ALSPAC)
AC=0.4351/2179 (1000Genomes)
HGVS:: NC_000019.10:g.6669739CA[6], NC_000019.10:g.6669739CA[7], NC_000019.10:g.6669739CA[8], NC_000019.10:g.6669739CA[9], NC_000019.10:g.6669739CA[10], NC_000019.10:g.6669739CA[11], NC_000019.10:g.6669739CA[12], NC_000019.10:g.6669739CA[13], NC_000019.10:g.6669739CA[14], NC_000019.10:g.6669739CA[15], NC_000019.10:g.6669739CA[16], NC_000019.10:g.6669739CA[17], NC_000019.10:g.6669739CA[19], NC_000019.10:g.6669739CA[20], NC_000019.10:g.6669739CA[21], NC_000019.10:g.6669739CA[22], NC_000019.10:g.6669739CA[23], NC_000019.10:g.6669739CA[24], NC_000019.10:g.6669739CA[25], NC_000019.10:g.6669739CA[26], NC_000019.10:g.6669739CA[27], NC_000019.10:g.6669739CA[31], NC_000019.9:g.6669750CA[6], NC_000019.9:g.6669750CA[7], NC_000019.9:g.6669750CA[8], NC_000019.9:g.6669750CA[9], NC_000019.9:g.6669750CA[10], NC_000019.9:g.6669750CA[11], NC_000019.9:g.6669750CA[12], NC_000019.9:g.6669750CA[13], NC_000019.9:g.6669750CA[14], NC_000019.9:g.6669750CA[15], NC_000019.9:g.6669750CA[16], NC_000019.9:g.6669750CA[17], NC_000019.9:g.6669750CA[19], NC_000019.9:g.6669750CA[20], NC_000019.9:g.6669750CA[21], NC_000019.9:g.6669750CA[22], NC_000019.9:g.6669750CA[23], NC_000019.9:g.6669750CA[24], NC_000019.9:g.6669750CA[25], NC_000019.9:g.6669750CA[26], NC_000019.9:g.6669750CA[27], NC_000019.9:g.6669750CA[31]

Select item 14913235943.

rs1491323594 [Homo sapiens]

Variant type:: DELINS
Alleles:: GA>- [Show Flanks]
Chromosome:: 19:6669775 (GRCh38)
19:6669786 (GRCh37)
Canonical SPDI:: NC_000019.10:6669773:AGA:A
Gene:: TNFSF14 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
-=0.00015/20 (GnomAD)
-=0.001667/1 (NorthernSweden)
-=0.084682/314 (TWINSUK)
-=0.11754/453 (ALSPAC)
HGVS:: NC_000019.10:g.6669775_6669776del, NC_000019.9:g.6669786_6669787del

Select item 14912198194.

rs1491219819 has merged into rs1213628420 [Homo sapiens]

Variant type:: DELINS
Alleles:: TG>-,TGTG,TGTGTGTG [Show Flanks]
Chromosome:: 19:6665782 (GRCh38)
19:6665793 (GRCh37)
Canonical SPDI:: NC_000019.10:6665777:TGTGTG:TGTG,NC_000019.10:6665777:TGTGTG:TGTGTGTG,NC_000019.10:6665777:TGTGTG:TGTGTGTGTGTG
Gene:: TNFSF14 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TGTGTGTG=0./0 (ALFA)
HGVS:: NC_000019.10:g.6665778TG[2], NC_000019.10:g.6665778TG[4], NC_000019.10:g.6665778TG[6], NC_000019.9:g.6665789TG[2], NC_000019.9:g.6665789TG[4], NC_000019.9:g.6665789TG[6]

Select item 14910135885.

rs1491013588 has merged into rs5826941 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAAAAAA>-,AAAA,AAAAA,AAAAAA,AAAAAAA,AAAAAAAAA,AAAAAAAAAA,AAAAAAAAAAA,AAAAAAAAAAAA,AAAAAAAAAAAAAA [Show Flanks]
Chromosome:: 19:6666407 (GRCh38)
19:6666418 (GRCh37)
Canonical SPDI:: NC_000019.10:6666396:AAAAAAAAAAAAAAAAAA:AAAAAAAAAA,NC_000019.10:6666396:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000019.10:6666396:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000019.10:6666396:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000019.10:6666396:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000019.10:6666396:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA,NC_000019.10:6666396:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA,NC_000019.10:6666396:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAA,NC_000019.10:6666396:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAA,NC_000019.10:6666396:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAA
Gene:: TNFSF14 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAAAAAAAA=0./0 (ALFA)
A=0.403/2018 (1000Genomes)
HGVS:: NC_000019.10:g.6666407_6666414del, NC_000019.10:g.6666411_6666414del, NC_000019.10:g.6666412_6666414del, NC_000019.10:g.6666413_6666414del, NC_000019.10:g.6666414del, NC_000019.10:g.6666414dup, NC_000019.10:g.6666413_6666414dup, NC_000019.10:g.6666412_6666414dup, NC_000019.10:g.6666411_6666414dup, NC_000019.10:g.6666409_6666414dup, NC_000019.9:g.6666418_6666425del, NC_000019.9:g.6666422_6666425del, NC_000019.9:g.6666423_6666425del, NC_000019.9:g.6666424_6666425del, NC_000019.9:g.6666425del, NC_000019.9:g.6666425dup, NC_000019.9:g.6666424_6666425dup, NC_000019.9:g.6666423_6666425dup, NC_000019.9:g.6666422_6666425dup, NC_000019.9:g.6666420_6666425dup

Select item 14902445026.

rs1490244502 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 19:6662663 (GRCh38)
19:6662674 (GRCh37)
Canonical SPDI:: NC_000019.10:6662662:C:T
Gene:: TNFSF14 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.6662663C>T, NC_000019.9:g.6662674C>T, NM_003807.5:c.*2263G>A, NM_003807.4:c.*2263G>A, NM_172014.3:c.*2263G>A, NM_001376887.1:c.*2263G>A

Select item 14901951197.

rs1490195119 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 19:6661685 (GRCh38)
19:6661696 (GRCh37)
Canonical SPDI:: NC_000019.10:6661684:G:A
Gene:: TNFSF14 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000019/5 (TOPMED)
HGVS:: NC_000019.10:g.6661685G>A, NC_000019.9:g.6661696G>A, NM_003807.5:c.*3241C>T, NM_003807.4:c.*3241C>T, NM_172014.3:c.*3241C>T, NM_001376887.1:c.*3241C>T

Select item 14900872218.

rs1490087221 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 19:6664188 (GRCh38)
19:6664199 (GRCh37)
Canonical SPDI:: NC_000019.10:6664187:G:A
Gene:: TNFSF14 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000019.10:g.6664188G>A, NC_000019.9:g.6664199G>A, NM_003807.5:c.*738C>T, NM_003807.4:c.*738C>T, NM_003807.3:c.*738C>T, NM_172014.3:c.*738C>T, NM_172014.2:c.*738C>T, NM_001376887.1:c.*738C>T

Select item 14900448459.

rs1490044845 [Homo sapiens]

Variant type:: DEL
Alleles:: GCTCTCAGCCTGTGCCCTGTCCTAC>- [Show Flanks]
Chromosome:: 19:6669715 (GRCh38)
19:6669726 (GRCh37)
Canonical SPDI:: NC_000019.10:6669714:GCTCTCAGCCTGTGCCCTGTCCTAC:
Gene:: TNFSF14 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0.000071/1 (ALFA)
-=0.000011/3 (TOPMED)
-=0.000022/3 (GnomAD)
HGVS:: NC_000019.10:g.6669715_6669739del, NC_000019.9:g.6669726_6669750del

Select item 148992093610.

rs1489920936 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 19:6665138 (GRCh38)
19:6665149 (GRCh37)
Canonical SPDI:: NC_000019.10:6665137:G:A,NC_000019.10:6665137:G:T
Gene:: TNFSF14 (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant
Validated:: by frequency,by alfa
MAF:: A=0.000043/1 (ALFA)
A=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000019.10:g.6665138G>A, NC_000019.10:g.6665138G>T, NC_000019.9:g.6665149G>A, NC_000019.9:g.6665149G>T, NM_003807.5:c.511C>T, NM_003807.5:c.511C>A, NM_003807.4:c.511C>T, NM_003807.4:c.511C>A, NM_003807.3:c.511C>T, NM_003807.3:c.511C>A, NM_172014.3:c.403C>T, NM_172014.3:c.403C>A, NM_172014.2:c.403C>T, NM_172014.2:c.403C>A, NM_001376887.1:c.511C>T, NM_001376887.1:c.511C>A, NP_003798.2:p.Pro171Ser, NP_003798.2:p.Pro171Thr, NP_742011.2:p.Pro135Ser, NP_742011.2:p.Pro135Thr, NP_001363816.1:p.Pro171Ser, NP_001363816.1:p.Pro171Thr

Select item 148971582711.

rs1489715827 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 19:6662157 (GRCh38)
19:6662168 (GRCh37)
Canonical SPDI:: NC_000019.10:6662156:G:A
Gene:: TNFSF14 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.6662157G>A, NC_000019.9:g.6662168G>A, NM_003807.5:c.*2769C>T, NM_003807.4:c.*2769C>T, NM_172014.3:c.*2769C>T, NM_001376887.1:c.*2769C>T

Select item 148966660612.

rs1489666606 has merged into rs3215060 [Homo sapiens]

Variant type:: DELINS
Alleles:: G>-,GG [Show Flanks]
Chromosome:: 19:6667291 (GRCh38)
19:6667302 (GRCh37)
Canonical SPDI:: NC_000019.10:6667290:GGGGG:GGGG,NC_000019.10:6667290:GGGGG:GGGGGG
Gene:: TNFSF14 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GGGG=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000007/1 (GnomAD)
G=0.000179/3 (TOMMO)
HGVS:: NC_000019.10:g.6667295del, NC_000019.10:g.6667295dup, NC_000019.9:g.6667306del, NC_000019.9:g.6667306dup

Select item 148964615413.

rs1489646154 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 19:6665130 (GRCh38)
19:6665141 (GRCh37)
Canonical SPDI:: NC_000019.10:6665129:G:A
Gene:: TNFSF14 (Varview)
Functional Consequence:: synonymous_variant,coding_sequence_variant
Validated:: by frequency
MAF:: A=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000019.10:g.6665130G>A, NC_000019.9:g.6665141G>A, NM_003807.5:c.519C>T, NM_003807.4:c.519C>T, NM_003807.3:c.519C>T, NM_172014.3:c.411C>T, NM_172014.2:c.411C>T, NM_001376887.1:c.519C>T

Select item 148962400014.

rs1489624000 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 19:6670141 (GRCh38)
19:6670152 (GRCh37)
Canonical SPDI:: NC_000019.10:6670140:A:G
Gene:: TNFSF14 (Varview)
Functional Consequence:: 5_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000004/1 (TOPMED)
A=0.5/1 (SGDP_PRJ)
HGVS:: NC_000019.10:g.6670141A>G, NC_000019.9:g.6670152A>G, NM_003807.5:c.-72T>C, NM_003807.4:c.-72T>C, NM_003807.3:c.-72T>C, NM_172014.3:c.-72T>C, NM_172014.2:c.-72T>C, NM_001376887.1:c.-72T>C

Select item 148954039015.

rs1489540390 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 19:6659217 (GRCh38)
19:6659228 (GRCh37)
Canonical SPDI:: NC_000019.10:6659216:T:C
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000094/1 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.6659217T>C, NC_000019.9:g.6659228T>C

Select item 148931784016.

rs1489317840 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 19:6662689 (GRCh38)
19:6662700 (GRCh37)
Canonical SPDI:: NC_000019.10:6662688:A:G
Gene:: TNFSF14 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000008/2 (TOPMED)
HGVS:: NC_000019.10:g.6662689A>G, NC_000019.9:g.6662700A>G, NM_003807.5:c.*2237T>C, NM_003807.4:c.*2237T>C, NM_172014.3:c.*2237T>C, NM_001376887.1:c.*2237T>C

Select item 148908752617.

rs1489087526 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 19:6660247 (GRCh38)
19:6660258 (GRCh37)
Canonical SPDI:: NC_000019.10:6660246:T:C
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.6660247T>C, NC_000019.9:g.6660258T>C

Select item 148885174018.

rs1488851740 [Homo sapiens]

Variant type:: DEL
Alleles:: T>- [Show Flanks]
Chromosome:: 19:6659999 (GRCh38)
19:6660010 (GRCh37)
Canonical SPDI:: NC_000019.10:6659998:T:
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.6659999del, NC_000019.9:g.6660010del

Select item 148875143919.

rs1488751439 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 19:6661137 (GRCh38)
19:6661148 (GRCh37)
Canonical SPDI:: NC_000019.10:6661136:T:C
Gene:: TNFSF14 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.6661137T>C, NC_000019.9:g.6661148T>C

Select item 148874201720.

rs1488742017 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 19:6669617 (GRCh38)
19:6669628 (GRCh37)
Canonical SPDI:: NC_000019.10:6669616:A:G
Gene:: TNFSF14 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000014/2 (GnomAD)
G=0.000023/6 (TOPMED)
G=0.000389/7 (TOMMO)
G=0.000546/1 (Korea1K)
G=0.001027/3 (KOREAN)
HGVS:: NC_000019.10:g.6669617A>G, NC_000019.9:g.6669628A>G

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