SNP Links for Gene (Select 8697) - SNP

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Select item 14915266911.

rs1491526691 has merged into rs1396163611 [Homo sapiens]

Variant type:: DELINS
Alleles:: AT>-,ATAT [Show Flanks]
Chromosome:: 5:138195770 (GRCh38)
5:137531459 (GRCh37)
Canonical SPDI:: NC_000005.10:138195764:TATATAT:TATAT,NC_000005.10:138195764:TATATAT:TATATATAT
Gene:: CDC23 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TATATATAT=0./0 (ALFA)
-=0.00014/2 (TOMMO)
HGVS:: NC_000005.10:g.138195766AT[2], NC_000005.10:g.138195766AT[4], NC_000005.9:g.137531455AT[2], NC_000005.9:g.137531455AT[4]

Select item 14915107192.

rs1491510719 [Homo sapiens]

Variant type:: SNV:
Alleles:: ->C
Chromosome:: no mapping
Canonical SPDI:

Select item 14914843323.

rs1491484332 [Homo sapiens]

Variant type:: DEL
Alleles:: TT>- [Show Flanks]
Chromosome:: 5:138195598 (GRCh38)
5:137531287 (GRCh37)
Canonical SPDI:: NC_000005.10:138195597:TT:
Gene:: CDC23 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.00008/6 (GnomAD)
-=0.00968/158 (TOMMO)
HGVS:: NC_000005.10:g.138195598_138195599del, NC_000005.9:g.137531287_137531288del

Select item 14914302694.

rs1491430269 [Homo sapiens]

Variant type:: DEL
Alleles:: TT>- [Show Flanks]
Chromosome:: 5:138195764 (GRCh38)
5:137531453 (GRCh37)
Canonical SPDI:: NC_000005.10:138195763:TT:
Gene:: CDC23 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
HGVS:: NC_000005.10:g.138195764_138195765del, NC_000005.9:g.137531453_137531454del

Select item 14913017405.

rs1491301740 has merged into rs905919467 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTTTTTTTTT>-,TTT,TTTT,TTTTT,TTTTTT,TTTTTTT,TTTTTTTT,TTTTTTTTT,TTTTTTTTTTT,TTTTTTTTTTTT,TTTTTTTTTTTTT,TTTTTTTTTTTTTT,TTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTT [Show Flanks]
Chromosome:: 5:138206888 (GRCh38)
5:137542577 (GRCh37)
Canonical SPDI:: NC_000005.10:138206878:TTTTTTTTTTTTTTTTTTT:TTTTTTTTT,NC_000005.10:138206878:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTT,NC_000005.10:138206878:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTT,NC_000005.10:138206878:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000005.10:138206878:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000005.10:138206878:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000005.10:138206878:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000005.10:138206878:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT,NC_000005.10:138206878:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTT,NC_000005.10:138206878:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT,NC_000005.10:138206878:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTT,NC_000005.10:138206878:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTT,NC_000005.10:138206878:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTT,NC_000005.10:138206878:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTT
Gene:: CDC23 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTTTTT=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000005.10:g.138206888_138206897del, NC_000005.10:g.138206891_138206897del, NC_000005.10:g.138206892_138206897del, NC_000005.10:g.138206893_138206897del, NC_000005.10:g.138206894_138206897del, NC_000005.10:g.138206895_138206897del, NC_000005.10:g.138206896_138206897del, NC_000005.10:g.138206897del, NC_000005.10:g.138206897dup, NC_000005.10:g.138206896_138206897dup, NC_000005.10:g.138206895_138206897dup, NC_000005.10:g.138206894_138206897dup, NC_000005.10:g.138206893_138206897dup, NC_000005.10:g.138206892_138206897dup, NC_000005.9:g.137542577_137542586del, NC_000005.9:g.137542580_137542586del, NC_000005.9:g.137542581_137542586del, NC_000005.9:g.137542582_137542586del, NC_000005.9:g.137542583_137542586del, NC_000005.9:g.137542584_137542586del, NC_000005.9:g.137542585_137542586del, NC_000005.9:g.137542586del, NC_000005.9:g.137542586dup, NC_000005.9:g.137542585_137542586dup, NC_000005.9:g.137542584_137542586dup, NC_000005.9:g.137542583_137542586dup, NC_000005.9:g.137542582_137542586dup, NC_000005.9:g.137542581_137542586dup

Select item 14912577486.

rs1491257748 [Homo sapiens]

Variant type:: INS
Alleles:: ->ATA [Show Flanks]
Chromosome:: 5:138191964 (GRCh38)
5:137527654 (GRCh37)
Canonical SPDI:: NC_000005.10:138191964::ATA
Gene:: CDC23 (Varview)
Functional Consequence:: intron_variant
HGVS:: NC_000005.10:g.138191964_138191965insATA, NC_000005.9:g.137527653_137527654insATA

Select item 14912302337.

rs1491230233 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->CA [Show Flanks]
Chromosome:: 5:138195690 (GRCh38)
5:137531380 (GRCh37)
Canonical SPDI:: NC_000005.10:138195690:A:ACA
Gene:: CDC23 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: ACA=0./0 (ALFA)
HGVS:: NC_000005.10:g.138195691_138195692insCA, NC_000005.9:g.137531380_137531381insCA

Select item 14912016668.

rs1491201666 [Homo sapiens]

Variant type:: DEL
Alleles:: AA>- [Show Flanks]
Chromosome:: 5:138195690 (GRCh38)
5:137531379 (GRCh37)
Canonical SPDI:: NC_000005.10:138195689:AA:
Gene:: CDC23 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.000029/3 (GnomAD)
HGVS:: NC_000005.10:g.138195690_138195691del, NC_000005.9:g.137531379_137531380del

Select item 14911993879.

rs1491199387 has merged into rs1283248779 [Homo sapiens]

Variant type:: DELINS
Alleles:: AT>-,ATAT [Show Flanks]
Chromosome:: 5:138195604 (GRCh38)
5:137531293 (GRCh37)
Canonical SPDI:: NC_000005.10:138195598:TATATAT:TATAT,NC_000005.10:138195598:TATATAT:TATATATAT
Gene:: CDC23 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TATATATAT=0./0 (ALFA)
-=0.00004/1 (TOMMO)
HGVS:: NC_000005.10:g.138195600AT[2], NC_000005.10:g.138195600AT[4], NC_000005.9:g.137531289AT[2], NC_000005.9:g.137531289AT[4]

Select item 149118103410.

rs1491181034 [Homo sapiens]

Variant type:: DEL
Alleles:: GC>- [Show Flanks]
Chromosome:: 5:138191964 (GRCh38)
5:137527653 (GRCh37)
Canonical SPDI:: NC_000005.10:138191963:GC:
Gene:: CDC23 (Varview)
Functional Consequence:: intron_variant
HGVS:: NC_000005.10:g.138191964_138191965del, NC_000005.9:g.137527653_137527654del

Select item 149104993211.

rs1491049932 has merged into rs71585106 [Homo sapiens]

Variant type:: DELINS
Alleles:: TT>-,TTT,TTTTT,TTTTTT,TTTTTTT,TTTTTTTT,TTTTTTTTT,TTTTTTTTTT,TTTTTTTTTTT,TTTTTTTTTTTTTT [Show Flanks]
Chromosome:: 5:138204635 (GRCh38)
5:137540324 (GRCh37)
Canonical SPDI:: NC_000005.10:138204629:TTTTTTT:TTTTT,NC_000005.10:138204629:TTTTTTT:TTTTTTTT,NC_000005.10:138204629:TTTTTTT:TTTTTTTTTT,NC_000005.10:138204629:TTTTTTT:TTTTTTTTTTT,NC_000005.10:138204629:TTTTTTT:TTTTTTTTTTTT,NC_000005.10:138204629:TTTTTTT:TTTTTTTTTTTTT,NC_000005.10:138204629:TTTTTTT:TTTTTTTTTTTTTT,NC_000005.10:138204629:TTTTTTT:TTTTTTTTTTTTTTT,NC_000005.10:138204629:TTTTTTT:TTTTTTTTTTTTTTTT,NC_000005.10:138204629:TTTTTTT:TTTTTTTTTTTTTTTTTTT
Gene:: CDC23 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTT=0./0 (ALFA)
TTTTTTT=0.475/19 (GENOME_DK)
-=0.5/4 (KOREAN)
HGVS:: NC_000005.10:g.138204635_138204636del, NC_000005.10:g.138204636dup, NC_000005.10:g.138204634_138204636dup, NC_000005.10:g.138204633_138204636dup, NC_000005.10:g.138204632_138204636dup, NC_000005.10:g.138204631_138204636dup, NC_000005.10:g.138204630_138204636dup, NC_000005.10:g.138204636_138204637insTTTTTTTT, NC_000005.10:g.138204636_138204637insTTTTTTTTT, NC_000005.10:g.138204636_138204637insTTTTTTTTTTTT, NC_000005.9:g.137540324_137540325del, NC_000005.9:g.137540325dup, NC_000005.9:g.137540323_137540325dup, NC_000005.9:g.137540322_137540325dup, NC_000005.9:g.137540321_137540325dup, NC_000005.9:g.137540320_137540325dup, NC_000005.9:g.137540319_137540325dup, NC_000005.9:g.137540325_137540326insTTTTTTTT, NC_000005.9:g.137540325_137540326insTTTTTTTTT, NC_000005.9:g.137540325_137540326insTTTTTTTTTTTT

Select item 149085440112.

rs1490854401 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 5:138207691 (GRCh38)
5:137543380 (GRCh37)
Canonical SPDI:: NC_000005.10:138207690:A:G
Gene:: CDC23 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
G=0.000035/1 (TOMMO)
HGVS:: NC_000005.10:g.138207691A>G, NC_000005.9:g.137543380A>G

Select item 149064250313.

rs1490642503 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 5:138198538 (GRCh38)
5:137534227 (GRCh37)
Canonical SPDI:: NC_000005.10:138198537:T:C
Gene:: CDC23 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000005.10:g.138198538T>C, NC_000005.9:g.137534227T>C

Select item 149054594414.

rs1490545944 has merged into rs1165999814 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTTTTTTT>-,TTTT,TTTTTT,TTTTTTT,TTTTTTTTT,TTTTTTTTTT,TTTTTTTTTTT,TTTTTTTTTTTT [Show Flanks]
Chromosome:: 5:138197507 (GRCh38)
5:137533196 (GRCh37)
Canonical SPDI:: NC_000005.10:138197495:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTT,NC_000005.10:138197495:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000005.10:138197495:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000005.10:138197495:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT,NC_000005.10:138197495:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTT,NC_000005.10:138197495:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT,NC_000005.10:138197495:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTT,NC_000005.10:138197495:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTT
Gene:: CDC23 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTTTTTTTTTTTTT=0./0 (ALFA)
HGVS:: NC_000005.10:g.138197507_138197514del, NC_000005.10:g.138197511_138197514del, NC_000005.10:g.138197513_138197514del, NC_000005.10:g.138197514del, NC_000005.10:g.138197514dup, NC_000005.10:g.138197513_138197514dup, NC_000005.10:g.138197512_138197514dup, NC_000005.10:g.138197511_138197514dup, NC_000005.9:g.137533196_137533203del, NC_000005.9:g.137533200_137533203del, NC_000005.9:g.137533202_137533203del, NC_000005.9:g.137533203del, NC_000005.9:g.137533203dup, NC_000005.9:g.137533202_137533203dup, NC_000005.9:g.137533201_137533203dup, NC_000005.9:g.137533200_137533203dup

Select item 149050325615.

rs1490503256 [Homo sapiens]

Variant type:: SNV:
Alleles:: T>C
Chromosome:: no mapping
Canonical SPDI:

Select item 149046683316.

rs1490466833 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 5:138195622 (GRCh38)
5:137531311 (GRCh37)
Canonical SPDI:: NC_000005.10:138195621:A:T
Gene:: CDC23 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000019/2 (GnomAD)
HGVS:: NC_000005.10:g.138195622A>T, NC_000005.9:g.137531311A>T

Select item 149036358617.

rs1490363586 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 5:138207068 (GRCh38)
5:137542757 (GRCh37)
Canonical SPDI:: NC_000005.10:138207067:T:C
Gene:: CDC23 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000005.10:g.138207068T>C, NC_000005.9:g.137542757T>C

Select item 149033646818.

rs1490336468 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 5:138200866 (GRCh38)
5:137536555 (GRCh37)
Canonical SPDI:: NC_000005.10:138200865:T:A
Gene:: CDC23 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000005.10:g.138200866T>A, NC_000005.9:g.137536555T>A

Select item 149032310719.

rs1490323107 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 5:138199635 (GRCh38)
5:137535324 (GRCh37)
Canonical SPDI:: NC_000005.10:138199634:G:C
Gene:: CDC23 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
HGVS:: NC_000005.10:g.138199635G>C, NC_000005.9:g.137535324G>C

Select item 149030397620.

rs1490303976 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 5:138194920 (GRCh38)
5:137530609 (GRCh37)
Canonical SPDI:: NC_000005.10:138194919:C:T
Gene:: CDC23 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000142/2 (ALFA)
T=0.000008/2 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000005.10:g.138194920C>T, NC_000005.9:g.137530609C>T

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