SNP Links for Gene (Select 86614) - SNP

Links from Gene

Items: 1 to 20 of 28

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Select item 14862301991.

rs1486230199 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: Y:18550435 (GRCh38)
Y:20712321 (GRCh37)
Canonical SPDI:: NC_000024.10:18550434:T:C
Gene:: HSFY1 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by cluster
MAF:: T=0./0 (SGDP_PRJ)
C=0.0009/6 (GnomAD)
C=0.0056/4 (KOREAN)
HGVS:: NC_000024.10:g.18550435T>C, NC_000024.9:g.20712321T>C, NG_004636.1:g.1034340T>C, NG_012030.1:g.8748T>C

Select item 14750660902.

rs1475066090 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: Y:18550810 (GRCh38)
Y:20712696 (GRCh37)
Canonical SPDI:: NC_000024.10:18550809:T:C
Gene:: HSFY1 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant,non_coding_transcript_variant
HGVS:: NC_000024.10:g.18550810T>C, NC_000024.9:g.20712696T>C, NG_004636.1:g.1034715T>C, NG_012030.1:g.9123T>C, NR_003510.1:n.748T>C, NM_001001878.1:c.*6T>C, NM_001001871.1:c.*6T>C, XR_007068453.1:n.748T>C

Select item 14541685393.

rs1454168539 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: Y:18573315 (GRCh38)
Y:20735201 (GRCh37)
Canonical SPDI:: NC_000024.10:18573314:G:A
Gene:: HSFY1 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
HGVS:: NC_000024.10:g.18573315G>A, NC_000024.9:g.20735201G>A, NG_004636.1:g.1057220G>A, NG_012030.1:g.31628G>A

Select item 13783600424.

rs1378360042 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: Y:18574424 (GRCh38)
Y:20736310 (GRCh37)
Canonical SPDI:: NC_000024.10:18574423:A:G
Gene:: HSFY1 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by cluster
MAF:: G=0.0008/4 (GnomAD)
G=0.1132/132 (KOREAN)
A=0.125/1 (SGDP_PRJ)
HGVS:: NC_000024.10:g.18574424A>G, NC_000024.9:g.20736310A>G, NG_004636.1:g.1058329A>G, NG_012030.1:g.32737A>G

Select item 13141841485.

rs1314184148 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: Y:18531640 (GRCh38)
Y:20693526 (GRCh37)
Canonical SPDI:: NC_000024.10:18531639:G:T
Gene:: HSFY1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by cluster
MAF:: G=0./0 (SGDP_PRJ)
T=0.0001/1 (GnomAD)
T=0.0038/6 (1000Genomes)
HGVS:: NC_000024.10:g.18531640G>T, NC_000024.9:g.20693526G>T, NG_004636.1:g.1015545G>T

Select item 12602555876.

rs1260255587 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->CA [Show Flanks]
Chromosome:: Y:18538791 (GRCh38)
Y:20700678 (GRCh37)
Canonical SPDI:: NC_000024.10:18538791:CACACACACACACACACACACACA:CACACACACACACACACACACACACA
Gene:: HSFY1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
HGVS:: NC_000024.10:g.18538792CA[13], NC_000024.9:g.20700678CA[13], NG_004636.1:g.1022697CA[13]

Select item 12516968077.

rs1251696807 [Homo sapiens]

Variant type:: DELINS
Alleles:: TT>-,T,TTT [Show Flanks]
Chromosome:: Y:18561405 (GRCh38)
Y:20723291 (GRCh37)
Canonical SPDI:: NC_000024.10:18561391:TTTTTTTTTTTTTTT:TTTTTTTTTTTTT,NC_000024.10:18561391:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000024.10:18561391:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT
Gene:: HSFY1 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by cluster
HGVS:: NC_000024.10:g.18561405_18561406del, NC_000024.10:g.18561406del, NC_000024.10:g.18561406dup, NC_000024.9:g.20723291_20723292del, NC_000024.9:g.20723292del, NC_000024.9:g.20723292dup, NG_004636.1:g.1045310_1045311del, NG_004636.1:g.1045311del, NG_004636.1:g.1045311dup, NG_012030.1:g.19718_19719del, NG_012030.1:g.19719del, NG_012030.1:g.19719dup

Select item 12426649518.

rs1242664951 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: Y:18550184 (GRCh38)
Y:20712070 (GRCh37)
Canonical SPDI:: NC_000024.10:18550183:C:T
Gene:: HSFY1 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant,non_coding_transcript_variant
HGVS:: NC_000024.10:g.18550184C>T, NC_000024.9:g.20712070C>T, NG_004636.1:g.1034089C>T, NG_012030.1:g.8497C>T, NR_003510.1:n.681C>T, NM_001001878.1:c.584C>T, NM_001001871.1:c.584C>T, XR_007068453.1:n.681C>T

Select item 12138773459.

rs1213877345 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: Y:18535206 (GRCh38)
Y:20697092 (GRCh37)
Canonical SPDI:: NC_000024.10:18535205:G:A
Gene:: HSFY1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
HGVS:: NC_000024.10:g.18535206G>A, NC_000024.9:g.20697092G>A, NG_004636.1:g.1019111G>A

Select item 119111605810.

rs1191116058 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: Y:18550462 (GRCh38)
Y:20712348 (GRCh37)
Canonical SPDI:: NC_000024.10:18550461:C:T
Gene:: HSFY1 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by cluster
MAF:: T=0.0025/4 (1000Genomes)
T=0.0107/55 (GnomAD)
HGVS:: NC_000024.10:g.18550462C>T, NC_000024.9:g.20712348C>T, NG_004636.1:g.1034367C>T, NG_012030.1:g.8775C>T

Select item 79680986111.

rs796809861 [Homo sapiens]

Variant type:: DELINS
Alleles:: CACACACACACACA>-,CA,CACACA,CACACACACA,CACACACACACA [Show Flanks]
Chromosome:: Y:18550421 (GRCh38)
Y:20712307 (GRCh37)
Canonical SPDI:: NC_000024.10:18550401:ACACACACACACACACACACACACACACACACA:ACACACACACACACACACA,NC_000024.10:18550401:ACACACACACACACACACACACACACACACACA:ACACACACACACACACACACA,NC_000024.10:18550401:ACACACACACACACACACACACACACACACACA:ACACACACACACACACACACACACA,NC_000024.10:18550401:ACACACACACACACACACACACACACACACACA:ACACACACACACACACACACACACACACA,NC_000024.10:18550401:ACACACACACACACACACACACACACACACACA:ACACACACACACACACACACACACACACACA
Gene:: HSFY1 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by cluster
HGVS:: NC_000024.10:g.18550403CA[9], NC_000024.10:g.18550403CA[10], NC_000024.10:g.18550403CA[12], NC_000024.10:g.18550403CA[14], NC_000024.10:g.18550403CA[15], NC_000024.9:g.20712289CA[9], NC_000024.9:g.20712289CA[10], NC_000024.9:g.20712289CA[12], NC_000024.9:g.20712289CA[14], NC_000024.9:g.20712289CA[15], NG_004636.1:g.1034308CA[9], NG_004636.1:g.1034308CA[10], NG_004636.1:g.1034308CA[12], NG_004636.1:g.1034308CA[14], NG_004636.1:g.1034308CA[15], NG_012030.1:g.8716CA[9], NG_012030.1:g.8716CA[10], NG_012030.1:g.8716CA[12], NG_012030.1:g.8716CA[14], NG_012030.1:g.8716CA[15]

Select item 79618312612.

rs796183126 [Homo sapiens]

Variant type:: SNV:
Alleles:: T>C
Chromosome:: no mapping
Canonical SPDI:

Select item 76803350413.

rs768033504 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: Y:18561154 (GRCh38)
Y:20723040 (GRCh37)
Canonical SPDI:: NC_000024.10:18561153:T:C
Gene:: HSFY1 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
HGVS:: NC_000024.10:g.18561154T>C, NC_000024.9:g.20723040T>C, NG_004636.1:g.1045059T>C, NG_012030.1:g.19467T>C

Select item 37714223814.

rs377142238 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: Y:18561357 (GRCh38)
Y:20723243 (GRCh37)
Canonical SPDI:: NC_000024.10:18561356:T:C
Gene:: HSFY1 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by cluster
MAF:: T=0./0 (SGDP_PRJ)
C=0.0105/14 (KOREAN)
HGVS:: NC_000024.10:g.18561357T>C, NC_000024.9:g.20723243T>C, NG_004636.1:g.1045262T>C, NG_012030.1:g.19670T>C

Select item 37297059415.

rs372970594 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: Y:18535253 (GRCh38)
Y:20697139 (GRCh37)
Canonical SPDI:: NC_000024.10:18535252:A:G
Gene:: HSFY1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
HGVS:: NC_000024.10:g.18535253A>G, NC_000024.9:g.20697139A>G, NG_004636.1:g.1019158A>G

Select item 20060458016.

rs200604580 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: Y:18538814 (GRCh38)
Y:20700700 (GRCh37)
Canonical SPDI:: NC_000024.10:18538813:C:G
Gene:: HSFY1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
HGVS:: NC_000024.10:g.18538814C>G, NC_000024.9:g.20700700C>G, NG_004636.1:g.1022719C>G

Select item 11358123117.

rs113581231 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: Y:18527944 (GRCh38)
Y:20689830 (GRCh37)
Canonical SPDI:: NC_000024.10:18527943:T:C
Gene:: HSFY1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
HGVS:: NC_000024.10:g.18527944T>C, NC_000024.9:g.20689830T>C, NG_004636.1:g.1011849T>C

Select item 11341123418.

rs113411234 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: Y:18554971 (GRCh38)
Y:20716857 (GRCh37)
Canonical SPDI:: NC_000024.10:18554970:A:C
Gene:: HSFY1 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
HGVS:: NC_000024.10:g.18554971A>C, NC_000024.9:g.20716857A>C, NG_004636.1:g.1038876A>C, NG_012030.1:g.13284A>C

Select item 11340056719.

rs113400567 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: Y:18531739 (GRCh38)
Y:20693625 (GRCh37)
Canonical SPDI:: NC_000024.10:18531738:T:C
Gene:: HSFY1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
HGVS:: NC_000024.10:g.18531739T>C, NC_000024.9:g.20693625T>C, NG_004636.1:g.1015644T>C

Select item 11312749620.

rs113127496 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: Y:18562483 (GRCh38)
Y:20724369 (GRCh37)
Canonical SPDI:: NC_000024.10:18562482:C:A
Gene:: HSFY1 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
HGVS:: NC_000024.10:g.18562483C>A, NC_000024.9:g.20724369C>A, NG_004636.1:g.1046388C>A, NG_012030.1:g.20796C>A

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