SNP Links for Gene (Select 8653) - SNP

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Select item 14868307401.

rs1486830740 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: Y:12913896 (GRCh38)
Y:15025808 (GRCh37)
Canonical SPDI:: NC_000024.10:12913895:C:G
Gene:: DDX3Y (Varview)
Functional Consequence:: intron_variant
HGVS:: NC_000024.10:g.12913896C>G, NC_000024.9:g.15025808C>G, NG_012831.1:g.14790C>G

Select item 14868049732.

rs1486804973 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: Y:12917458 (GRCh38)
Y:15029370 (GRCh37)
Canonical SPDI:: NC_000024.10:12917457:A:G
Gene:: DDX3Y (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant,genic_downstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency
MAF:: G=0.00001/1 (GnomAD_exomes)
HGVS:: NC_000024.10:g.12917458A>G, NC_000024.9:g.15029370A>G, NG_012831.1:g.18352A>G, NM_004660.5:c.1819A>G, NM_004660.4:c.1819A>G, NM_004660.3:c.1819A>G, NM_001122665.3:c.1819A>G, NM_001122665.2:c.1819A>G, NM_001122665.1:c.1819A>G, NM_001302552.3:c.1810A>G, NM_001302552.2:c.1810A>G, NM_001302552.1:c.1810A>G, NR_136718.2:n.2286A>G, NR_136718.1:n.2368A>G, NR_136716.2:n.2206A>G, NR_136716.1:n.2288A>G, NR_136720.2:n.2137A>G, NR_136720.1:n.2219A>G, NR_136719.2:n.2076A>G, NR_136719.1:n.2158A>G, NR_136717.2:n.1968A>G, NR_136717.1:n.2050A>G, NR_136721.2:n.1871A>G, NR_136721.1:n.1881A>G, NM_001324195.2:c.1750A>G, NM_001324195.1:c.1750A>G, NR_136723.1:n.2283A>G, NR_136724.1:n.2203A>G, NR_136722.1:n.1965A>G, XM_047442775.1:c.1819A>G, XM_047442776.1:c.1741A>G, XM_047442778.1:c.1267A>G, NP_004651.2:p.Ser607Gly, NP_001116137.1:p.Ser607Gly, NP_001289481.1:p.Ser604Gly, NP_001311124.1:p.Ser584Gly, XP_047298731.1:p.Ser607Gly, XP_047298732.1:p.Ser581Gly, XP_047298734.1:p.Ser423Gly

Select item 14849864763.

rs1484986476 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: Y:12914991 (GRCh38)
Y:15026903 (GRCh37)
Canonical SPDI:: NC_000024.10:12914990:T:C
Gene:: DDX3Y (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency
MAF:: C=0.00001/1 (GnomAD_exomes)
HGVS:: NC_000024.10:g.12914991T>C, NC_000024.9:g.15026903T>C, NG_012831.1:g.15885T>C, NR_136718.2:n.1250T>C, NR_136718.1:n.1332T>C, NR_136716.2:n.1170T>C, NR_136716.1:n.1252T>C, NR_136720.2:n.1170T>C, NR_136720.1:n.1252T>C, NR_136719.2:n.1040T>C, NR_136719.1:n.1122T>C, NR_136723.1:n.1247T>C, NR_136724.1:n.1167T>C

Select item 14810642024.

rs1481064202 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G,T [Show Flanks]
Chromosome:: Y:12913050 (GRCh38)
Y:15024962 (GRCh37)
Canonical SPDI:: NC_000024.10:12913049:A:G,NC_000024.10:12913049:A:T
Gene:: DDX3Y (Varview)
Functional Consequence:: coding_sequence_variant,5_prime_UTR_variant,non_coding_transcript_variant,synonymous_variant
HGVS:: NC_000024.10:g.12913050A>G, NC_000024.10:g.12913050A>T, NC_000024.9:g.15024962A>G, NC_000024.9:g.15024962A>T, NG_012831.1:g.13944A>G, NG_012831.1:g.13944A>T, NM_004660.5:c.525A>G, NM_004660.5:c.525A>T, NM_004660.4:c.525A>G, NM_004660.4:c.525A>T, NM_004660.3:c.525A>G, NM_004660.3:c.525A>T, NM_001122665.3:c.525A>G, NM_001122665.3:c.525A>T, NM_001122665.2:c.525A>G, NM_001122665.2:c.525A>T, NM_001122665.1:c.525A>G, NM_001122665.1:c.525A>T, NM_001302552.3:c.516A>G, NM_001302552.3:c.516A>T, NM_001302552.2:c.516A>G, NM_001302552.2:c.516A>T, NM_001302552.1:c.516A>G, NM_001302552.1:c.516A>T, NR_136718.2:n.674A>G, NR_136718.2:n.674A>T, NR_136718.1:n.756A>G, NR_136718.1:n.756A>T, NR_136716.2:n.594A>G, NR_136716.2:n.594A>T, NR_136716.1:n.676A>G, NR_136716.1:n.676A>T, NR_136720.2:n.594A>G, NR_136720.2:n.594A>T, NR_136720.1:n.676A>G, NR_136720.1:n.676A>T, NR_136719.2:n.464A>G, NR_136719.2:n.464A>T, NR_136719.1:n.546A>G, NR_136719.1:n.546A>T, NR_136717.2:n.674A>G, NR_136717.2:n.674A>T, NR_136717.1:n.756A>G, NR_136717.1:n.756A>T, NR_136721.2:n.594A>G, NR_136721.2:n.594A>T, NR_136721.1:n.604A>G, NR_136721.1:n.604A>T, NM_001324195.2:c.525A>G, NM_001324195.2:c.525A>T, NM_001324195.1:c.525A>G, NM_001324195.1:c.525A>T, NR_136723.1:n.671A>G, NR_136723.1:n.671A>T, NR_136724.1:n.591A>G, NR_136724.1:n.591A>T, NR_136722.1:n.671A>G, NR_136722.1:n.671A>T, XM_047442775.1:c.525A>G, XM_047442775.1:c.525A>T, XM_047442776.1:c.516A>G, XM_047442776.1:c.516A>T, XM_047442778.1:c.-28A>G, XM_047442778.1:c.-28A>T, XM_047442777.1:c.525A>G, XM_047442777.1:c.525A>T

Select item 14808394825.

rs1480839482 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: Y:12908742 (GRCh38)
Y:15020653 (GRCh37)
Canonical SPDI:: NC_000024.10:12908741:G:A
Gene:: DDX3Y (Varview)
Functional Consequence:: intron_variant
HGVS:: NC_000024.10:g.12908742G>A, NC_000024.9:g.15020653G>A, NG_012831.1:g.9635G>A

Select item 14787433456.

rs1478743345 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: Y:12907563 (GRCh38)
Y:15019474 (GRCh37)
Canonical SPDI:: NC_000024.10:12907562:A:G
Gene:: DDX3Y (Varview)
Functional Consequence:: coding_sequence_variant,upstream_transcript_variant,synonymous_variant,genic_upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0.00084/4 (ALFA)
G=0.00007/3 (GnomAD_exomes)
HGVS:: NC_000024.10:g.12907563A>G, NC_000024.9:g.15019474A>G, NG_012831.1:g.8456A>G, NM_004660.5:c.72A>G, NM_004660.4:c.72A>G, NM_004660.3:c.72A>G, NM_001122665.3:c.72A>G, NM_001122665.2:c.72A>G, NM_001122665.1:c.72A>G, NM_001302552.3:c.63A>G, NM_001302552.2:c.63A>G, NM_001302552.1:c.63A>G, NR_136718.2:n.141A>G, NR_136718.1:n.223A>G, NR_136716.2:n.141A>G, NR_136716.1:n.223A>G, NR_136720.2:n.141A>G, NR_136720.1:n.223A>G, NR_136719.2:n.141A>G, NR_136719.1:n.223A>G, NR_136717.2:n.141A>G, NR_136717.1:n.223A>G, NR_136721.2:n.141A>G, NR_136721.1:n.151A>G, NM_001324195.2:c.72A>G, NM_001324195.1:c.72A>G, NR_136723.1:n.138A>G, NR_136724.1:n.138A>G, NR_136722.1:n.138A>G, XM_047442775.1:c.72A>G, XM_047442776.1:c.63A>G, XM_047442777.1:c.72A>G

Select item 14765153887.

rs1476515388 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: Y:12916646 (GRCh38)
Y:15028558 (GRCh37)
Canonical SPDI:: NC_000024.10:12916645:G:T
Gene:: DDX3Y (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency
MAF:: T=0.00002/1 (GnomAD_exomes)
HGVS:: NC_000024.10:g.12916646G>T, NC_000024.9:g.15028558G>T, NG_012831.1:g.17540G>T

Select item 14755002848.

rs1475500284 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: Y:12904973 (GRCh38)
Y:15016884 (GRCh37)
Canonical SPDI:: NC_000024.10:12904972:G:C
Gene:: DDX3Y (Varview)
Functional Consequence:: coding_sequence_variant,upstream_transcript_variant,missense_variant,genic_upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency
MAF:: C=0.00001/1 (GnomAD_exomes)
HGVS:: NC_000024.10:g.12904973G>C, NC_000024.9:g.15016884G>C, NG_012831.1:g.5866G>C, NM_004660.5:c.37G>C, NM_004660.4:c.37G>C, NM_004660.3:c.37G>C, NM_001122665.3:c.37G>C, NM_001122665.2:c.37G>C, NM_001122665.1:c.37G>C, NR_136718.2:n.106G>C, NR_136718.1:n.188G>C, NR_136716.2:n.106G>C, NR_136716.1:n.188G>C, NR_136720.2:n.106G>C, NR_136720.1:n.188G>C, NR_136719.2:n.106G>C, NR_136719.1:n.188G>C, NR_136717.2:n.106G>C, NR_136717.1:n.188G>C, NR_136721.2:n.106G>C, NR_136721.1:n.116G>C, NM_001324195.2:c.37G>C, NM_001324195.1:c.37G>C, XM_047442775.1:c.37G>C, XM_047442777.1:c.37G>C, NP_004651.2:p.Asp13His, NP_001116137.1:p.Asp13His, NP_001311124.1:p.Asp13His, XP_047298731.1:p.Asp13His, XP_047298733.1:p.Asp13His

Select item 14754897639.

rs1475489763 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: Y:12916504 (GRCh38)
Y:15028416 (GRCh37)
Canonical SPDI:: NC_000024.10:12916503:G:T
Gene:: DDX3Y (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency
MAF:: T=0.00002/1 (GnomAD_exomes)
HGVS:: NC_000024.10:g.12916504G>T, NC_000024.9:g.15028416G>T, NG_012831.1:g.17398G>T

Select item 147542626710.

rs1475426267 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: Y:12915006 (GRCh38)
Y:15026918 (GRCh37)
Canonical SPDI:: NC_000024.10:12915005:A:G
Gene:: DDX3Y (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0.00042/2 (ALFA)
G=0.00001/1 (GnomAD_exomes)
HGVS:: NC_000024.10:g.12915006A>G, NC_000024.9:g.15026918A>G, NG_012831.1:g.15900A>G, NR_136718.2:n.1265A>G, NR_136718.1:n.1347A>G, NR_136716.2:n.1185A>G, NR_136716.1:n.1267A>G, NR_136720.2:n.1185A>G, NR_136720.1:n.1267A>G, NR_136719.2:n.1055A>G, NR_136719.1:n.1137A>G, NR_136723.1:n.1262A>G, NR_136724.1:n.1182A>G

Select item 147381799111.

rs1473817991 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: Y:12917600 (GRCh38)
Y:15029512 (GRCh37)
Canonical SPDI:: NC_000024.10:12917599:G:T
Gene:: DDX3Y (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by cluster
MAF:: T=0.0777/108 (KOREAN)
HGVS:: NC_000024.10:g.12917600G>T, NC_000024.9:g.15029512G>T, NG_012831.1:g.18494G>T

Select item 146280285212.

rs1462802852 has merged into rs9341299 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->C [Show Flanks]
Chromosome:: Y:12911166 (GRCh38)
Y:15023079 (GRCh37)
Canonical SPDI:: NC_000024.10:12911166:CC:CCC
Gene:: DDX3Y (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by cluster
MAF:: C=0.0018/53 (GnomAD)
C=0.00625/10 (1000Genomes)
C=0.125/6 (Vietnamese)
HGVS:: NC_000024.10:g.12911168dup, NC_000024.9:g.15023080dup, NG_012831.1:g.12062dup

Select item 145476431713.

rs1454764317 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: Y:12911824 (GRCh38)
Y:15023736 (GRCh37)
Canonical SPDI:: NC_000024.10:12911823:G:T
Gene:: DDX3Y (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0.0004/2 (ALFA)
HGVS:: NC_000024.10:g.12911824G>T, NC_000024.9:g.15023736G>T, NG_012831.1:g.12718G>T

Select item 145474745614.

rs1454747456 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: Y:12917523 (GRCh38)
Y:15029435 (GRCh37)
Canonical SPDI:: NC_000024.10:12917522:C:A
Gene:: DDX3Y (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant,genic_downstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency
MAF:: A=0.00002/1 (GnomAD_exomes)
HGVS:: NC_000024.10:g.12917523C>A, NC_000024.9:g.15029435C>A, NG_012831.1:g.18417C>A, NM_004660.5:c.1884C>A, NM_004660.4:c.1884C>A, NM_004660.3:c.1884C>A, NM_001122665.3:c.1884C>A, NM_001122665.2:c.1884C>A, NM_001122665.1:c.1884C>A, NM_001302552.3:c.1875C>A, NM_001302552.2:c.1875C>A, NM_001302552.1:c.1875C>A, NR_136718.2:n.2351C>A, NR_136718.1:n.2433C>A, NR_136716.2:n.2271C>A, NR_136716.1:n.2353C>A, NR_136720.2:n.2202C>A, NR_136720.1:n.2284C>A, NR_136719.2:n.2141C>A, NR_136719.1:n.2223C>A, NR_136717.2:n.2033C>A, NR_136717.1:n.2115C>A, NR_136721.2:n.1936C>A, NR_136721.1:n.1946C>A, NM_001324195.2:c.1815C>A, NM_001324195.1:c.1815C>A, NR_136723.1:n.2348C>A, NR_136724.1:n.2268C>A, NR_136722.1:n.2030C>A, XM_047442775.1:c.1884C>A, XM_047442776.1:c.1806C>A, XM_047442778.1:c.1332C>A, NP_004651.2:p.Asn628Lys, NP_001116137.1:p.Asn628Lys, NP_001289481.1:p.Asn625Lys, NP_001311124.1:p.Asn605Lys, XP_047298731.1:p.Asn628Lys, XP_047298732.1:p.Asn602Lys, XP_047298734.1:p.Asn444Lys

Select item 145399280115.

rs1453992801 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: Y:12911795 (GRCh38)
Y:15023707 (GRCh37)
Canonical SPDI:: NC_000024.10:12911794:T:C
Gene:: DDX3Y (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency
MAF:: C=0.00002/1 (GnomAD_exomes)
HGVS:: NC_000024.10:g.12911795T>C, NC_000024.9:g.15023707T>C, NG_012831.1:g.12689T>C

Select item 144342438016.

rs1443424380 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: Y:12911616 (GRCh38)
Y:15023528 (GRCh37)
Canonical SPDI:: NC_000024.10:12911615:C:G
Gene:: DDX3Y (Varview)
Functional Consequence:: intron_variant
HGVS:: NC_000024.10:g.12911616C>G, NC_000024.9:g.15023528C>G, NG_012831.1:g.12510C>G

Select item 143975034917.

rs1439750349 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: Y:12912765 (GRCh38)
Y:15024677 (GRCh37)
Canonical SPDI:: NC_000024.10:12912764:G:C
Gene:: DDX3Y (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant,5_prime_UTR_variant,non_coding_transcript_variant
Validated:: by frequency
MAF:: C=0.00001/1 (GnomAD_exomes)
HGVS:: NC_000024.10:g.12912765G>C, NC_000024.9:g.15024677G>C, NG_012831.1:g.13659G>C, NM_004660.5:c.320G>C, NM_004660.4:c.320G>C, NM_004660.3:c.320G>C, NM_001122665.3:c.320G>C, NM_001122665.2:c.320G>C, NM_001122665.1:c.320G>C, NM_001302552.3:c.311G>C, NM_001302552.2:c.311G>C, NM_001302552.1:c.311G>C, NR_136718.2:n.389G>C, NR_136718.1:n.471G>C, NR_136716.2:n.389G>C, NR_136716.1:n.471G>C, NR_136720.2:n.389G>C, NR_136720.1:n.471G>C, NR_136719.2:n.259G>C, NR_136719.1:n.341G>C, NR_136717.2:n.389G>C, NR_136717.1:n.471G>C, NR_136721.2:n.389G>C, NR_136721.1:n.399G>C, NM_001324195.2:c.320G>C, NM_001324195.1:c.320G>C, NR_136723.1:n.386G>C, NR_136724.1:n.386G>C, NR_136722.1:n.386G>C, XM_047442775.1:c.320G>C, XM_047442776.1:c.311G>C, XM_047442778.1:c.-233G>C, XM_047442777.1:c.320G>C, NP_004651.2:p.Gly107Ala, NP_001116137.1:p.Gly107Ala, NP_001289481.1:p.Gly104Ala, NP_001311124.1:p.Gly107Ala, XP_047298731.1:p.Gly107Ala, XP_047298732.1:p.Gly104Ala, XP_047298733.1:p.Gly107Ala

Select item 143901185018.

rs1439011850 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: Y:12904179 (GRCh38)
Y:15016090 (GRCh37)
Canonical SPDI:: NC_000024.10:12904178:C:G
Gene:: DDX3Y (Varview)
Functional Consequence:: genic_upstream_transcript_variant,5_prime_UTR_variant,upstream_transcript_variant
HGVS:: NC_000024.10:g.12904179C>G, NC_000024.9:g.15016090C>G, NG_012831.1:g.5072C>G, NM_001122665.3:c.-238C>G, NM_001122665.2:c.-238C>G, NM_001122665.1:c.-238C>G, XM_047442775.1:c.-315C>G

Select item 143813937419.

rs1438139374 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: Y:12915458 (GRCh38)
Y:15027370 (GRCh37)
Canonical SPDI:: NC_000024.10:12915457:T:C
Gene:: DDX3Y (Varview)
Functional Consequence:: intron_variant
HGVS:: NC_000024.10:g.12915458T>C, NC_000024.9:g.15027370T>C, NG_012831.1:g.16352T>C

Select item 143467874020.

rs1434678740 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: Y:12917102 (GRCh38)
Y:15029014 (GRCh37)
Canonical SPDI:: NC_000024.10:12917101:A:G
Gene:: DDX3Y (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant,downstream_transcript_variant
HGVS:: NC_000024.10:g.12917102A>G, NC_000024.9:g.15029014A>G, NG_012831.1:g.17996A>G

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