Links from Gene
Items: 1 to 20 of 1000
1.
rs1491543569 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- ->T
[Show Flanks]
- Chromosome:
- 17:60619421
(GRCh38)
17:58696783
(GRCh37)
- Canonical SPDI:
- NC_000017.11:60619421:T:TT
- Gene:
- PPM1D (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
TT=0.000142/2
(
ALFA)
T=0.000189/50
(TOPMED)
T=0.000228/32
(GnomAD)
- HGVS:
3.
rs1491512811 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- GT>-
[Show Flanks]
- Chromosome:
- 17:60644905
(GRCh38)
17:58722266
(GRCh37)
- Canonical SPDI:
- NC_000017.11:60644901:TGTGT:TGT
- Gene:
- PPM1D (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
TGT=0.000447/2
(
ALFA)
-=0.000021/3
(GnomAD)
-=0.000446/2
(Estonian)
- HGVS:
5.
rs1491439690 has merged into rs371276467 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- GTGTGTGTGTGTGTGTGTGTGTGT>-,GT,GTGTGTGT,GTGTGTGTGT,GTGTGTGTGTGT,GTGTGTGTGTGTGT,GTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
[Show Flanks]
- Chromosome:
- 17:60645470
(GRCh38)
17:58722831
(GRCh37)
- Canonical SPDI:
- NC_000017.11:60645456:TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT:TGTGTGTGTGTGT,NC_000017.11:60645456:TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT:TGTGTGTGTGTGTGT,NC_000017.11:60645456:TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT:TGTGTGTGTGTGTGTGTGTGT,NC_000017.11:60645456:TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT:TGTGTGTGTGTGTGTGTGTGTGT,NC_000017.11:60645456:TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT:TGTGTGTGTGTGTGTGTGTGTGTGT,NC_000017.11:60645456:TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT:TGTGTGTGTGTGTGTGTGTGTGTGTGT,NC_000017.11:60645456:TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT:TGTGTGTGTGTGTGTGTGTGTGTGTGTGT,NC_000017.11:60645456:TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT:TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,NC_000017.11:60645456:TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT:TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,NC_000017.11:60645456:TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT:TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,NC_000017.11:60645456:TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT:TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,NC_000017.11:60645456:TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT:TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,NC_000017.11:60645456:TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT:TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,NC_000017.11:60645456:TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT:TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,NC_000017.11:60645456:TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT:TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,NC_000017.11:60645456:TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT:TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,NC_000017.11:60645456:TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT:TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,NC_000017.11:60645456:TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT:TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,NC_000017.11:60645456:TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT:TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,NC_000017.11:60645456:TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT:TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
- Gene:
- PPM1D (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
TGTGTGTGTGTGTGT=0./0
(
ALFA)
TG=0.1911/957
(1000Genomes)
- HGVS:
NC_000017.11:g.60645458GT[6], NC_000017.11:g.60645458GT[7], NC_000017.11:g.60645458GT[10], NC_000017.11:g.60645458GT[11], NC_000017.11:g.60645458GT[12], NC_000017.11:g.60645458GT[13], NC_000017.11:g.60645458GT[14], NC_000017.11:g.60645458GT[15], NC_000017.11:g.60645458GT[16], NC_000017.11:g.60645458GT[17], NC_000017.11:g.60645458GT[19], NC_000017.11:g.60645458GT[20], NC_000017.11:g.60645458GT[21], NC_000017.11:g.60645458GT[22], NC_000017.11:g.60645458GT[23], NC_000017.11:g.60645458GT[24], NC_000017.11:g.60645458GT[25], NC_000017.11:g.60645458GT[26], NC_000017.11:g.60645458GT[27], NC_000017.11:g.60645458GT[28], NC_000017.10:g.58722819GT[6], NC_000017.10:g.58722819GT[7], NC_000017.10:g.58722819GT[10], NC_000017.10:g.58722819GT[11], NC_000017.10:g.58722819GT[12], NC_000017.10:g.58722819GT[13], NC_000017.10:g.58722819GT[14], NC_000017.10:g.58722819GT[15], NC_000017.10:g.58722819GT[16], NC_000017.10:g.58722819GT[17], NC_000017.10:g.58722819GT[19], NC_000017.10:g.58722819GT[20], NC_000017.10:g.58722819GT[21], NC_000017.10:g.58722819GT[22], NC_000017.10:g.58722819GT[23], NC_000017.10:g.58722819GT[24], NC_000017.10:g.58722819GT[25], NC_000017.10:g.58722819GT[26], NC_000017.10:g.58722819GT[27], NC_000017.10:g.58722819GT[28], NG_023265.1:g.50266GT[6], NG_023265.1:g.50266GT[7], NG_023265.1:g.50266GT[10], NG_023265.1:g.50266GT[11], NG_023265.1:g.50266GT[12], NG_023265.1:g.50266GT[13], NG_023265.1:g.50266GT[14], NG_023265.1:g.50266GT[15], NG_023265.1:g.50266GT[16], NG_023265.1:g.50266GT[17], NG_023265.1:g.50266GT[19], NG_023265.1:g.50266GT[20], NG_023265.1:g.50266GT[21], NG_023265.1:g.50266GT[22], NG_023265.1:g.50266GT[23], NG_023265.1:g.50266GT[24], NG_023265.1:g.50266GT[25], NG_023265.1:g.50266GT[26], NG_023265.1:g.50266GT[27], NG_023265.1:g.50266GT[28]
6.
rs1491424313 has merged into rs201335786 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- TTT>-,T,TT,TTTT,TTTTT,TTTTTT,TTTTTTT
[Show Flanks]
- Chromosome:
- 17:60648400
(GRCh38)
17:58725761
(GRCh37)
- Canonical SPDI:
- NC_000017.11:60648386:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTT,NC_000017.11:60648386:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000017.11:60648386:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000017.11:60648386:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000017.11:60648386:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT,NC_000017.11:60648386:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT,NC_000017.11:60648386:TTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTT
- Gene:
- PPM1D (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
TTTTTTTTTTTTTT=0./0
(
ALFA)
-=0.00333/2
(NorthernSweden)
-=0.15595/781
(1000Genomes)
- HGVS:
NC_000017.11:g.60648400_60648402del, NC_000017.11:g.60648401_60648402del, NC_000017.11:g.60648402del, NC_000017.11:g.60648402dup, NC_000017.11:g.60648401_60648402dup, NC_000017.11:g.60648400_60648402dup, NC_000017.11:g.60648399_60648402dup, NC_000017.10:g.58725761_58725763del, NC_000017.10:g.58725762_58725763del, NC_000017.10:g.58725763del, NC_000017.10:g.58725763dup, NC_000017.10:g.58725762_58725763dup, NC_000017.10:g.58725761_58725763dup, NC_000017.10:g.58725760_58725763dup, NG_023265.1:g.53208_53210del, NG_023265.1:g.53209_53210del, NG_023265.1:g.53210del, NG_023265.1:g.53210dup, NG_023265.1:g.53209_53210dup, NG_023265.1:g.53208_53210dup, NG_023265.1:g.53207_53210dup
7.
rs1491388166 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- ->A
[Show Flanks]
- Chromosome:
- 17:60655245
(GRCh38)
17:58732607
(GRCh37)
- Canonical SPDI:
- NC_000017.11:60655245:A:AA
- Gene:
- PPM1D (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa
- MAF:
AA=0./0
(
ALFA)
A=0.000007/1
(GnomAD)
- HGVS:
8.
rs1491327853 [Homo sapiens]- Variant type:
- DEL
- Alleles:
- GT>-
[Show Flanks]
- Chromosome:
- 17:60648386
(GRCh38)
17:58725747
(GRCh37)
- Canonical SPDI:
- NC_000017.11:60648385:GT:
- Gene:
- PPM1D (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
-=0./0
(
ALFA)
-=0.00015/20
(GnomAD)
- HGVS:
9.
rs1491278200 [Homo sapiens]- Variant type:
- INS
- Alleles:
- ->TAG
[Show Flanks]
- Chromosome:
- 17:60644902
(GRCh38)
17:58722264
(GRCh37)
- Canonical SPDI:
- NC_000017.11:60644902::TAG
- Gene:
- PPM1D (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency
- MAF:
TAG=0.000007/1
(GnomAD)
- HGVS:
11.
rs1491230231 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- GT>-
[Show Flanks]
- Chromosome:
- 17:60663124
(GRCh38)
17:58740485
(GRCh37)
- Canonical SPDI:
- NC_000017.11:60663121:GTGT:GT
- Gene:
- PPM1D (Varview)
- Functional Consequence:
- genic_downstream_transcript_variant,non_coding_transcript_variant,coding_sequence_variant,frameshift_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
GTGT=0./0
(
ALFA)
-=0.00004/1
(TOMMO)
- HGVS:
12.
rs1491183268 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- ->T
[Show Flanks]
- Chromosome:
- 17:60663122
(GRCh38)
17:58740484
(GRCh37)
- Canonical SPDI:
- NC_000017.11:60663122:T:TT
- Gene:
- PPM1D (Varview)
- Functional Consequence:
- genic_downstream_transcript_variant,non_coding_transcript_variant,coding_sequence_variant,frameshift_variant
- Validated:
- by frequency,by alfa
- MAF:
TT=0./0
(
ALFA)
T=0.000004/1
(TOPMED)
- HGVS:
14.
rs1491106447 has merged into rs34932283 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- AAAAAAAA>-,A,AAA,AAAA,AAAAA,AAAAAA,AAAAAAA,AAAAAAAAA,AAAAAAAAAA,AAAAAAAAAAA,AAAAAAAAAAAA,AAAAAAAAAAAAAAA
[Show Flanks]
- Chromosome:
- 17:60602793
(GRCh38)
17:58680154
(GRCh37)
- Canonical SPDI:
- NC_000017.11:60602779:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000017.11:60602779:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000017.11:60602779:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000017.11:60602779:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000017.11:60602779:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA,NC_000017.11:60602779:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA,NC_000017.11:60602779:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA,NC_000017.11:60602779:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAA,NC_000017.11:60602779:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAA,NC_000017.11:60602779:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAA,NC_000017.11:60602779:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAA,NC_000017.11:60602779:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAA
- Gene:
- PPM1D (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
AAAAAAAAAAAAAAAAA=0./0
(
ALFA)
A=0.244/1222
(1000Genomes)
- HGVS:
NC_000017.11:g.60602793_60602800del, NC_000017.11:g.60602794_60602800del, NC_000017.11:g.60602796_60602800del, NC_000017.11:g.60602797_60602800del, NC_000017.11:g.60602798_60602800del, NC_000017.11:g.60602799_60602800del, NC_000017.11:g.60602800del, NC_000017.11:g.60602800dup, NC_000017.11:g.60602799_60602800dup, NC_000017.11:g.60602798_60602800dup, NC_000017.11:g.60602797_60602800dup, NC_000017.11:g.60602794_60602800dup, NC_000017.10:g.58680154_58680161del, NC_000017.10:g.58680155_58680161del, NC_000017.10:g.58680157_58680161del, NC_000017.10:g.58680158_58680161del, NC_000017.10:g.58680159_58680161del, NC_000017.10:g.58680160_58680161del, NC_000017.10:g.58680161del, NC_000017.10:g.58680161dup, NC_000017.10:g.58680160_58680161dup, NC_000017.10:g.58680159_58680161dup, NC_000017.10:g.58680158_58680161dup, NC_000017.10:g.58680155_58680161dup, NG_023265.1:g.7601_7608del, NG_023265.1:g.7602_7608del, NG_023265.1:g.7604_7608del, NG_023265.1:g.7605_7608del, NG_023265.1:g.7606_7608del, NG_023265.1:g.7607_7608del, NG_023265.1:g.7608del, NG_023265.1:g.7608dup, NG_023265.1:g.7607_7608dup, NG_023265.1:g.7606_7608dup, NG_023265.1:g.7605_7608dup, NG_023265.1:g.7602_7608dup
15.
rs1491098416 [Homo sapiens]- Variant type:
- INS
- Alleles:
- ->A
[Show Flanks]
- Chromosome:
- 17:60645495
(GRCh38)
17:58722857
(GRCh37)
- Canonical SPDI:
- NC_000017.11:60645495::A
- Gene:
- PPM1D (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa
- MAF:
A=0./0
(
ALFA)
A=0.000016/2
(GnomAD)
- HGVS:
16.
rs1491095595 has merged into rs1406303977 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- GTGT>-,GT,GTGTGT,GTGTGTGTGT
[Show Flanks]
- Chromosome:
- 17:60645496
(GRCh38)
17:58722857
(GRCh37)
- Canonical SPDI:
- NC_000017.11:60645494:TGTGT:T,NC_000017.11:60645494:TGTGT:TGT,NC_000017.11:60645494:TGTGT:TGTGTGT,NC_000017.11:60645494:TGTGT:TGTGTGTGTGT
- Gene:
- PPM1D (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
TGT=0./0
(
ALFA)
-=0.000004/1
(TOPMED)
-=0.000072/1
(TOMMO)
- HGVS:
NC_000017.11:g.60645496_60645499del, NC_000017.11:g.60645496GT[1], NC_000017.11:g.60645496GT[3], NC_000017.11:g.60645496GT[5], NC_000017.10:g.58722857_58722860del, NC_000017.10:g.58722857GT[1], NC_000017.10:g.58722857GT[3], NC_000017.10:g.58722857GT[5], NG_023265.1:g.50304_50307del, NG_023265.1:g.50304GT[1], NG_023265.1:g.50304GT[3], NG_023265.1:g.50304GT[5]
17.
rs1490982716 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- G>A
[Show Flanks]
- Chromosome:
- 17:60660985
(GRCh38)
17:58738346
(GRCh37)
- Canonical SPDI:
- NC_000017.11:60660984:G:A
- Gene:
- PPM1D (Varview)
- Functional Consequence:
- genic_downstream_transcript_variant,intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
A=0./0
(
ALFA)
A=0.000034/9
(TOPMED)
A=0.000036/5
(GnomAD)
- HGVS:
18.
rs1490964335 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- G>A
[Show Flanks]
- Chromosome:
- 17:60645420
(GRCh38)
17:58722781
(GRCh37)
- Canonical SPDI:
- NC_000017.11:60645419:G:A
- Gene:
- PPM1D (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
A=0.000071/1
(
ALFA)
A=0.000007/1
(GnomAD)
A=0.000008/2
(TOPMED)
- HGVS:
19.
rs1490951939 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- G>A
[Show Flanks]
- Chromosome:
- 17:60658724
(GRCh38)
17:58736085
(GRCh37)
- Canonical SPDI:
- NC_000017.11:60658723:G:A
- Gene:
- PPM1D (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
A=0.000224/1
(
ALFA)
A=0.000007/1
(GnomAD)
A=0.000223/1
(Estonian)
- HGVS:
20.
rs1490945673 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- A>G
[Show Flanks]
- Chromosome:
- 17:60658970
(GRCh38)
17:58736331
(GRCh37)
- Canonical SPDI:
- NC_000017.11:60658969:A:G
- Gene:
- PPM1D (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
G=0./0
(
ALFA)
G=0.000004/1
(TOPMED)
G=0.000007/1
(GnomAD)
- HGVS: