SNP Links for Gene (Select 84648) - SNP

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Select item 14904886601.

rs1490488660 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 1:152581162 (GRCh38)
1:152553638 (GRCh37)
Canonical SPDI:: NC_000001.11:152581161:C:G
Gene:: LCE3D (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.152581162C>G, NC_000001.10:g.152553638C>G

Select item 14900306322.

rs1490030632 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,C [Show Flanks]
Chromosome:: 1:152579495 (GRCh38)
1:152551971 (GRCh37)
Canonical SPDI:: NC_000001.11:152579494:T:A,NC_000001.11:152579494:T:C
Gene:: LCE3D (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
A=0.000021/3 (GnomAD)
HGVS:: NC_000001.11:g.152579495T>A, NC_000001.11:g.152579495T>C, NC_000001.10:g.152551971T>A, NC_000001.10:g.152551971T>C, NM_032563.2:c.*163A>T, NM_032563.2:c.*163A>G, NM_032563.1:c.*163A>T, NM_032563.1:c.*163A>G

Select item 14900001243.

rs1490000124 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:152580723 (GRCh38)
1:152553199 (GRCh37)
Canonical SPDI:: NC_000001.11:152580722:T:C
Gene:: LCE3D (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.152580723T>C, NC_000001.10:g.152553199T>C

Select item 14877340894.

rs1487734089 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 1:152581529 (GRCh38)
1:152554005 (GRCh37)
Canonical SPDI:: NC_000001.11:152581528:T:A
Gene:: LCE3D (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000011/3 (TOPMED)
HGVS:: NC_000001.11:g.152581529T>A, NC_000001.10:g.152554005T>A

Select item 14870814015.

rs1487081401 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:152580831 (GRCh38)
1:152553307 (GRCh37)
Canonical SPDI:: NC_000001.11:152580830:T:C
Gene:: LCE3D (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000001.11:g.152580831T>C, NC_000001.10:g.152553307T>C

Select item 14848473036.

rs1484847303 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:152579846 (GRCh38)
1:152552322 (GRCh37)
Canonical SPDI:: NC_000001.11:152579845:G:A
Gene:: LCE3D (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000001.11:g.152579846G>A, NC_000001.10:g.152552322G>A, NM_032563.2:c.91C>T, NM_032563.1:c.91C>T, NP_115952.1:p.Pro31Ser

Select item 14837801417.

rs1483780141 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 1:152581653 (GRCh38)
1:152554129 (GRCh37)
Canonical SPDI:: NC_000001.11:152581652:A:G
Gene:: LCE3D (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency
MAF:: G=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.152581653A>G, NC_000001.10:g.152554129A>G

Select item 14837532848.

rs1483753284 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 1:152580002 (GRCh38)
1:152552478 (GRCh37)
Canonical SPDI:: NC_000001.11:152580001:A:G
Gene:: LCE3D (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000007/1 (GnomAD)
G=0.00003/8 (TOPMED)
HGVS:: NC_000001.11:g.152580002A>G, NC_000001.10:g.152552478A>G

Select item 14836365329.

rs1483636532 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 1:152582326 (GRCh38)
1:152554802 (GRCh37)
Canonical SPDI:: NC_000001.11:152582325:C:A
Gene:: LCE3D (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000001.11:g.152582326C>A, NC_000001.10:g.152554802C>A

Select item 148300728510.

rs1483007285 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:152581469 (GRCh38)
1:152553945 (GRCh37)
Canonical SPDI:: NC_000001.11:152581468:G:A
Gene:: LCE3D (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.152581469G>A, NC_000001.10:g.152553945G>A

Select item 148295710911.

rs1482957109 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: 1:152582456 (GRCh38)
1:152554932 (GRCh37)
Canonical SPDI:: NC_000001.11:152582455:T:C,NC_000001.11:152582455:T:G
Gene:: LCE3D (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
G=0.000035/1 (TOMMO)
HGVS:: NC_000001.11:g.152582456T>C, NC_000001.11:g.152582456T>G, NC_000001.10:g.152554932T>C, NC_000001.10:g.152554932T>G

Select item 148054149412.

rs1480541494 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 1:152580437 (GRCh38)
1:152552913 (GRCh37)
Canonical SPDI:: NC_000001.11:152580436:A:G
Gene:: LCE3D (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000008/2 (TOPMED)
HGVS:: NC_000001.11:g.152580437A>G, NC_000001.10:g.152552913A>G

Select item 148037808713.

rs1480378087 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:152580713 (GRCh38)
1:152553189 (GRCh37)
Canonical SPDI:: NC_000001.11:152580712:C:T
Gene:: LCE3D (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000011/3 (TOPMED)
T=0.000035/1 (TOMMO)
HGVS:: NC_000001.11:g.152580713C>T, NC_000001.10:g.152553189C>T

Select item 148002935514.

rs1480029355 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:152580652 (GRCh38)
1:152553128 (GRCh37)
Canonical SPDI:: NC_000001.11:152580651:C:T
Gene:: LCE3D (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.152580652C>T, NC_000001.10:g.152553128C>T

Select item 147979648115.

rs1479796481 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:152580513 (GRCh38)
1:152552989 (GRCh37)
Canonical SPDI:: NC_000001.11:152580512:G:A
Gene:: LCE3D (Varview)
Functional Consequence:: 5_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000011/3 (TOPMED)
A=0.000021/3 (GnomAD)
HGVS:: NC_000001.11:g.152580513G>A, NC_000001.10:g.152552989G>A, NM_032563.2:c.-66C>T

Select item 147974669116.

rs1479746691 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 1:152580806 (GRCh38)
1:152553282 (GRCh37)
Canonical SPDI:: NC_000001.11:152580805:G:C
Gene:: LCE3D (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.152580806G>C, NC_000001.10:g.152553282G>C

Select item 147900403417.

rs1479004034 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 1:152579951 (GRCh38)
1:152552427 (GRCh37)
Canonical SPDI:: NC_000001.11:152579950:A:G
Gene:: LCE3D (Varview)
Functional Consequence:: 5_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.152579951A>G, NC_000001.10:g.152552427A>G, NM_032563.2:c.-15T>C, NM_032563.1:c.-15T>C

Select item 147830925918.

rs1478309259 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:152582106 (GRCh38)
1:152554582 (GRCh37)
Canonical SPDI:: NC_000001.11:152582105:G:A
Gene:: LCE3D (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000008/2 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000001.11:g.152582106G>A, NC_000001.10:g.152554582G>A

Select item 147809754619.

rs1478097546 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 1:152580664 (GRCh38)
1:152553140 (GRCh37)
Canonical SPDI:: NC_000001.11:152580663:A:G
Gene:: LCE3D (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000019/5 (TOPMED)
G=0.000021/3 (GnomAD)
HGVS:: NC_000001.11:g.152580664A>G, NC_000001.10:g.152553140A>G

Select item 147764982620.

rs1477649826 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:152581274 (GRCh38)
1:152553750 (GRCh37)
Canonical SPDI:: NC_000001.11:152581273:T:C
Gene:: LCE3D (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
HGVS:: NC_000001.11:g.152581274T>C, NC_000001.10:g.152553750T>C

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