Links from Gene
Items: 1 to 20 of 16413
1.
rs1491588123 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- CA>-
[Show Flanks]
- Chromosome:
- 10:59215848
(GRCh38)
10:60975608
(GRCh37)
- Canonical SPDI:
- NC_000010.11:59215846:ACA:A
- Gene:
- PHYHIPL (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
A=0.000253/3
(
ALFA)
-=0.000176/24
(GnomAD)
-=0.000318/5
(TOMMO)
-=0.001638/3
(Korea1K)
- HGVS:
2.
rs1491413293 [Homo sapiens]- Variant type:
- DEL
- Alleles:
- GT>-
[Show Flanks]
- Chromosome:
- 10:59180314
(GRCh38)
10:60940074
(GRCh37)
- Canonical SPDI:
- NC_000010.11:59180313:GT:
- Gene:
- PHYHIPL (Varview)
- Functional Consequence:
- genic_upstream_transcript_variant,intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
-=0.00143/17
(
ALFA)
-=0.00057/16
(TOMMO)
-=0.00106/50
(GnomAD)
- HGVS:
3.
rs1491332255 has merged into rs58992023 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- AAAAAAAAAAAAAAA>-,A,AA,AAA,AAAAA,AAAAAA,AAAAAAA,AAAAAAAA,AAAAAAAAA,AAAAAAAAAA,AAAAAAAAAAA,AAAAAAAAAAAA,AAAAAAAAAAAAA,AAAAAAAAAAAAAA,AAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAA
[Show Flanks]
- Chromosome:
- 10:59211676
(GRCh38)
10:60971436
(GRCh37)
- Canonical SPDI:
- NC_000010.11:59211664:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAA,NC_000010.11:59211664:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000010.11:59211664:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000010.11:59211664:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000010.11:59211664:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000010.11:59211664:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000010.11:59211664:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA,NC_000010.11:59211664:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA,NC_000010.11:59211664:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA,NC_000010.11:59211664:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAA,NC_000010.11:59211664:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAA,NC_000010.11:59211664:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAA,NC_000010.11:59211664:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAA,NC_000010.11:59211664:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAA,NC_000010.11:59211664:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000010.11:59211664:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000010.11:59211664:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000010.11:59211664:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000010.11:59211664:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000010.11:59211664:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000010.11:59211664:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000010.11:59211664:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000010.11:59211664:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
- Gene:
- PHYHIPL (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
- HGVS:
NC_000010.11:g.59211676_59211690del, NC_000010.11:g.59211677_59211690del, NC_000010.11:g.59211678_59211690del, NC_000010.11:g.59211679_59211690del, NC_000010.11:g.59211681_59211690del, NC_000010.11:g.59211682_59211690del, NC_000010.11:g.59211683_59211690del, NC_000010.11:g.59211684_59211690del, NC_000010.11:g.59211685_59211690del, NC_000010.11:g.59211686_59211690del, NC_000010.11:g.59211687_59211690del, NC_000010.11:g.59211688_59211690del, NC_000010.11:g.59211689_59211690del, NC_000010.11:g.59211690del, NC_000010.11:g.59211690dup, NC_000010.11:g.59211689_59211690dup, NC_000010.11:g.59211688_59211690dup, NC_000010.11:g.59211687_59211690dup, NC_000010.11:g.59211686_59211690dup, NC_000010.11:g.59211685_59211690dup, NC_000010.11:g.59211684_59211690dup, NC_000010.11:g.59211683_59211690dup, NC_000010.11:g.59211682_59211690dup, NC_000010.10:g.60971436_60971450del, NC_000010.10:g.60971437_60971450del, NC_000010.10:g.60971438_60971450del, NC_000010.10:g.60971439_60971450del, NC_000010.10:g.60971441_60971450del, NC_000010.10:g.60971442_60971450del, NC_000010.10:g.60971443_60971450del, NC_000010.10:g.60971444_60971450del, NC_000010.10:g.60971445_60971450del, NC_000010.10:g.60971446_60971450del, NC_000010.10:g.60971447_60971450del, NC_000010.10:g.60971448_60971450del, NC_000010.10:g.60971449_60971450del, NC_000010.10:g.60971450del, NC_000010.10:g.60971450dup, NC_000010.10:g.60971449_60971450dup, NC_000010.10:g.60971448_60971450dup, NC_000010.10:g.60971447_60971450dup, NC_000010.10:g.60971446_60971450dup, NC_000010.10:g.60971445_60971450dup, NC_000010.10:g.60971444_60971450dup, NC_000010.10:g.60971443_60971450dup, NC_000010.10:g.60971442_60971450dup
4.
rs1491252242 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- ->GTATAT,GTATATAT,GTATATATATATAT,GTGTGTATAT,GTGTGTATATAT,GTGTGTATATATAT,GTGTGTATATATATAT,GTGTGTATATATATATATATAT,GTGTGTGTATAT,GTGTGTGTATATAT,GTGTGTGTATATATAT,GTGTGTGTATATATATAT,GTGTGTGTGTATAT,GTGTGTGTGTATATAT,GTGTGTGTGTATATATAT
[Show Flanks]
- Chromosome:
- 10:59180314
(GRCh38)
10:60940075
(GRCh37)
- Canonical SPDI:
- NC_000010.11:59180314:TAT:TATGTATAT,NC_000010.11:59180314:TAT:TATGTATATAT,NC_000010.11:59180314:TAT:TATGTATATATATATAT,NC_000010.11:59180314:TAT:TATGTGTGTATAT,NC_000010.11:59180314:TAT:TATGTGTGTATATAT,NC_000010.11:59180314:TAT:TATGTGTGTATATATAT,NC_000010.11:59180314:TAT:TATGTGTGTATATATATAT,NC_000010.11:59180314:TAT:TATGTGTGTATATATATATATATAT,NC_000010.11:59180314:TAT:TATGTGTGTGTATAT,NC_000010.11:59180314:TAT:TATGTGTGTGTATATAT,NC_000010.11:59180314:TAT:TATGTGTGTGTATATATAT,NC_000010.11:59180314:TAT:TATGTGTGTGTATATATATAT,NC_000010.11:59180314:TAT:TATGTGTGTGTGTATAT,NC_000010.11:59180314:TAT:TATGTGTGTGTGTATATAT,NC_000010.11:59180314:TAT:TATGTGTGTGTGTATATATAT
- Gene:
- PHYHIPL (Varview)
- Functional Consequence:
- genic_upstream_transcript_variant,intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
TATGTGTGTATAT=0./0
(
ALFA)
TATGTGTGTGTGTATA=0.000004/1
(TOPMED)
- HGVS:
NC_000010.11:g.59180317_59180318insGTATAT, NC_000010.11:g.59180317_59180318insGTATATAT, NC_000010.11:g.59180317_59180318insGTATATATATATAT, NC_000010.11:g.59180317_59180318insGTGTGTATAT, NC_000010.11:g.59180317_59180318insGTGTGTATATAT, NC_000010.11:g.59180317_59180318insGTGTGTATATATAT, NC_000010.11:g.59180317_59180318insGTGTGTATATATATAT, NC_000010.11:g.59180317_59180318insGTGTGTATATATATATATATAT, NC_000010.11:g.59180317_59180318insGTGTGTGTATAT, NC_000010.11:g.59180317_59180318insGTGTGTGTATATAT, NC_000010.11:g.59180317_59180318insGTGTGTGTATATATAT, NC_000010.11:g.59180317_59180318insGTGTGTGTATATATATAT, NC_000010.11:g.59180317_59180318insGTGTGTGTGTATAT, NC_000010.11:g.59180317_59180318insGTGTGTGTGTATATAT, NC_000010.11:g.59180317_59180318insGTGTGTGTGTATATATAT, NC_000010.10:g.60940077_60940078insGTATAT, NC_000010.10:g.60940077_60940078insGTATATAT, NC_000010.10:g.60940077_60940078insGTATATATATATAT, NC_000010.10:g.60940077_60940078insGTGTGTATAT, NC_000010.10:g.60940077_60940078insGTGTGTATATAT, NC_000010.10:g.60940077_60940078insGTGTGTATATATAT, NC_000010.10:g.60940077_60940078insGTGTGTATATATATAT, NC_000010.10:g.60940077_60940078insGTGTGTATATATATATATATAT, NC_000010.10:g.60940077_60940078insGTGTGTGTATAT, NC_000010.10:g.60940077_60940078insGTGTGTGTATATAT, NC_000010.10:g.60940077_60940078insGTGTGTGTATATATAT, NC_000010.10:g.60940077_60940078insGTGTGTGTATATATATAT, NC_000010.10:g.60940077_60940078insGTGTGTGTGTATAT, NC_000010.10:g.60940077_60940078insGTGTGTGTGTATATAT, NC_000010.10:g.60940077_60940078insGTGTGTGTGTATATATAT
5.
rs1491236495 has merged into rs1337406522 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- AAAAA>-,A,AAA,AAAA,AAAAAA
[Show Flanks]
- Chromosome:
- 10:59224497
(GRCh38)
10:60984257
(GRCh37)
- Canonical SPDI:
- NC_000010.11:59224495:AAAAAA:A,NC_000010.11:59224495:AAAAAA:AA,NC_000010.11:59224495:AAAAAA:AAAA,NC_000010.11:59224495:AAAAAA:AAAAA,NC_000010.11:59224495:AAAAAA:AAAAAAA
- Gene:
- PHYHIPL (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
A=0./0
(
ALFA)
-=0.00164/3
(Korea1K)
-=0.00502/3
(NorthernSweden)
-=0.02589/434
(TOMMO)
- HGVS:
6.
rs1491205646 has merged into rs1554799094 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- AT>-,ATACATATATATATATATATATAT,ATAT,ATATAT,ATATATAT,ATATATATAT,ATATATATATAT,ATATATATATATAGATATATATATATATATATATATAT,ATATATATATATAT,ATATATATATATATAT,ATATATATATATATATAT,ATATATATATATATATATAT,ATATATATATATATATATATAT,ATATATATATATATATATATATAT,ATATATATATATATATATATATATAT,ATATATATATATATATATATATATATAT,ATATATATATATATATATATATATATATAT,ATATATATATATATATATATATATATATATAT,ATATATATATATATATATATATATATATATATAT,ATATATATATATATATATATATATATATATATATAT,ATATATATATATATATATATATATATATATATATATAT,ATATATATATATATATATATATATATATATATATATATAT,ATATATATATATATATATATATATATATATATATATATATAT,ATATATATATATATATATATATATATATATATATATATATATAT,ATATATATATATATATATATATATATATATATATATATATATATATAT,ATATATATATATATGTATATATATATATATATATAT,ATATATATATATGTATATATATATATATATATAT,ATATATATATATGTATATATATATATATATATATAT,ATATATATATGTATATATATATATATATATAT,ATATATGTATATATATATATATATATAT
[Show Flanks]
- Chromosome:
- 10:59227986
(GRCh38)
10:60987746
(GRCh37)
- Canonical SPDI:
- NC_000010.11:59227975:ATATATATATAT:ATATATATAT,NC_000010.11:59227975:ATATATATATAT:ATATATATATATACATATATATATATATATATAT,NC_000010.11:59227975:ATATATATATAT:ATATATATATATAT,NC_000010.11:59227975:ATATATATATAT:ATATATATATATATAT,NC_000010.11:59227975:ATATATATATAT:ATATATATATATATATAT,NC_000010.11:59227975:ATATATATATAT:ATATATATATATATATATAT,NC_000010.11:59227975:ATATATATATAT:ATATATATATATATATATATAT,NC_000010.11:59227975:ATATATATATAT:ATATATATATATATATATATATAGATATATATATATATATATATATAT,NC_000010.11:59227975:ATATATATATAT:ATATATATATATATATATATATAT,NC_000010.11:59227975:ATATATATATAT:ATATATATATATATATATATATATAT,NC_000010.11:59227975:ATATATATATAT:ATATATATATATATATATATATATATAT,NC_000010.11:59227975:ATATATATATAT:ATATATATATATATATATATATATATATAT,NC_000010.11:59227975:ATATATATATAT:ATATATATATATATATATATATATATATATAT,NC_000010.11:59227975:ATATATATATAT:ATATATATATATATATATATATATATATATATAT,NC_000010.11:59227975:ATATATATATAT:ATATATATATATATATATATATATATATATATATAT,NC_000010.11:59227975:ATATATATATAT:ATATATATATATATATATATATATATATATATATATAT,NC_000010.11:59227975:ATATATATATAT:ATATATATATATATATATATATATATATATATATATATAT,NC_000010.11:59227975:ATATATATATAT:ATATATATATATATATATATATATATATATATATATATATAT,NC_000010.11:59227975:ATATATATATAT:ATATATATATATATATATATATATATATATATATATATATATAT,NC_000010.11:59227975:ATATATATATAT:ATATATATATATATATATATATATATATATATATATATATATATAT,NC_000010.11:59227975:ATATATATATAT:ATATATATATATATATATATATATATATATATATATATATATATATAT,NC_000010.11:59227975:ATATATATATAT:ATATATATATATATATATATATATATATATATATATATATATATATATAT,NC_000010.11:59227975:ATATATATATAT:ATATATATATATATATATATATATATATATATATATATATATATATATATAT,NC_000010.11:59227975:ATATATATATAT:ATATATATATATATATATATATATATATATATATATATATATATATATATATAT,NC_000010.11:59227975:ATATATATATAT:ATATATATATATATATATATATATATATATATATATATATATATATATATATATATAT,NC_000010.11:59227975:ATATATATATAT:ATATATATATATATATATATATATGTATATATATATATATATATAT,NC_000010.11:59227975:ATATATATATAT:ATATATATATATATATATATATGTATATATATATATATATATAT,NC_000010.11:59227975:ATATATATATAT:ATATATATATATATATATATATGTATATATATATATATATATATAT,NC_000010.11:59227975:ATATATATATAT:ATATATATATATATATATATGTATATATATATATATATATAT,NC_000010.11:59227975:ATATATATATAT:ATATATATATATATATGTATATATATATATATATATAT
- Gene:
- PHYHIPL (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
ATATATATATATACATATATATATATATATATAT=0./0
(
ALFA)
-=0.00378/14
(TWINSUK)
-=0.00597/23
(ALSPAC)
ATAT=0.00719/36
(1000Genomes)
- HGVS:
NC_000010.11:g.59227976AT[5], NC_000010.11:g.59227976_59227987AT[6]ACATATATATATATATATATAT[1], NC_000010.11:g.59227976AT[7], NC_000010.11:g.59227976AT[8], NC_000010.11:g.59227976AT[9], NC_000010.11:g.59227976AT[10], NC_000010.11:g.59227976AT[11], NC_000010.11:g.59227976_59227987AT[11]AGATATATATATATATATATATATAT[1], NC_000010.11:g.59227976AT[12], NC_000010.11:g.59227976AT[13], NC_000010.11:g.59227976AT[14], NC_000010.11:g.59227976AT[15], NC_000010.11:g.59227976AT[16], NC_000010.11:g.59227976AT[17], NC_000010.11:g.59227976AT[18], NC_000010.11:g.59227976AT[19], NC_000010.11:g.59227976AT[20], NC_000010.11:g.59227976AT[21], NC_000010.11:g.59227976AT[22], NC_000010.11:g.59227976AT[23], NC_000010.11:g.59227976AT[24], NC_000010.11:g.59227976AT[25], NC_000010.11:g.59227976AT[26], NC_000010.11:g.59227976AT[27], NC_000010.11:g.59227976AT[29], NC_000010.11:g.59227976_59227987AT[12]GTATATATATATATATATATAT[1], NC_000010.11:g.59227976_59227987AT[11]GTATATATATATATATATATAT[1], NC_000010.11:g.59227976_59227987AT[11]GTATATATATATATATATATATAT[1], NC_000010.11:g.59227976_59227987AT[10]GTATATATATATATATATATAT[1], NC_000010.11:g.59227976_59227987AT[8]GTATATATATATATATATATAT[1], NC_000010.10:g.60987736AT[5], NC_000010.10:g.60987736_60987747AT[6]ACATATATATATATATATATAT[1], NC_000010.10:g.60987736AT[7], NC_000010.10:g.60987736AT[8], NC_000010.10:g.60987736AT[9], NC_000010.10:g.60987736AT[10], NC_000010.10:g.60987736AT[11], NC_000010.10:g.60987736_60987747AT[11]AGATATATATATATATATATATATAT[1], NC_000010.10:g.60987736AT[12], NC_000010.10:g.60987736AT[13], NC_000010.10:g.60987736AT[14], NC_000010.10:g.60987736AT[15], NC_000010.10:g.60987736AT[16], NC_000010.10:g.60987736AT[17], NC_000010.10:g.60987736AT[18], NC_000010.10:g.60987736AT[19], NC_000010.10:g.60987736AT[20], NC_000010.10:g.60987736AT[21], NC_000010.10:g.60987736AT[22], NC_000010.10:g.60987736AT[23], NC_000010.10:g.60987736AT[24], NC_000010.10:g.60987736AT[25], NC_000010.10:g.60987736AT[26], NC_000010.10:g.60987736AT[27], NC_000010.10:g.60987736AT[29], NC_000010.10:g.60987736_60987747AT[12]GTATATATATATATATATATAT[1], NC_000010.10:g.60987736_60987747AT[11]GTATATATATATATATATATAT[1], NC_000010.10:g.60987736_60987747AT[11]GTATATATATATATATATATATAT[1], NC_000010.10:g.60987736_60987747AT[10]GTATATATATATATATATATAT[1], NC_000010.10:g.60987736_60987747AT[8]GTATATATATATATATATATAT[1]
7.
rs1491059586 has merged into rs140480148 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- CACACACA>-,CA,CACA,CACACA,CACACACACA,CACACACACACA,CACACACACACACA,CACACACACACACACA,CACACACACACACACACA,CACACACACACACACACACA
[Show Flanks]
- Chromosome:
- 10:59180271
(GRCh38)
10:60940031
(GRCh37)
- Canonical SPDI:
- NC_000010.11:59180257:ACACACACACACACACACACA:ACACACACACACA,NC_000010.11:59180257:ACACACACACACACACACACA:ACACACACACACACA,NC_000010.11:59180257:ACACACACACACACACACACA:ACACACACACACACACA,NC_000010.11:59180257:ACACACACACACACACACACA:ACACACACACACACACACA,NC_000010.11:59180257:ACACACACACACACACACACA:ACACACACACACACACACACACA,NC_000010.11:59180257:ACACACACACACACACACACA:ACACACACACACACACACACACACA,NC_000010.11:59180257:ACACACACACACACACACACA:ACACACACACACACACACACACACACA,NC_000010.11:59180257:ACACACACACACACACACACA:ACACACACACACACACACACACACACACA,NC_000010.11:59180257:ACACACACACACACACACACA:ACACACACACACACACACACACACACACACA,NC_000010.11:59180257:ACACACACACACACACACACA:ACACACACACACACACACACACACACACACACA
- Gene:
- PHYHIPL (Varview)
- Functional Consequence:
- intron_variant,genic_upstream_transcript_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
ACACACACACACACA=0./0
(
ALFA)
AC=0.09585/480
(1000Genomes)
ACACAC=0.25/10
(GENOME_DK)
- HGVS:
NC_000010.11:g.59180259CA[6], NC_000010.11:g.59180259CA[7], NC_000010.11:g.59180259CA[8], NC_000010.11:g.59180259CA[9], NC_000010.11:g.59180259CA[11], NC_000010.11:g.59180259CA[12], NC_000010.11:g.59180259CA[13], NC_000010.11:g.59180259CA[14], NC_000010.11:g.59180259CA[15], NC_000010.11:g.59180259CA[16], NC_000010.10:g.60940019CA[6], NC_000010.10:g.60940019CA[7], NC_000010.10:g.60940019CA[8], NC_000010.10:g.60940019CA[9], NC_000010.10:g.60940019CA[11], NC_000010.10:g.60940019CA[12], NC_000010.10:g.60940019CA[13], NC_000010.10:g.60940019CA[14], NC_000010.10:g.60940019CA[15], NC_000010.10:g.60940019CA[16]
8.
rs1490971138 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- C>T
[Show Flanks]
- Chromosome:
- 10:59192599
(GRCh38)
10:60952359
(GRCh37)
- Canonical SPDI:
- NC_000010.11:59192598:C:T
- Gene:
- PHYHIPL (Varview)
- Functional Consequence:
- genic_upstream_transcript_variant,intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
T=0./0
(
ALFA)
T=0.000004/1
(TOPMED)
T=0.000007/1
(GnomAD)
- HGVS:
9.
rs1490966939 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- GGT>-
[Show Flanks]
- Chromosome:
- 10:59228438
(GRCh38)
10:60988198
(GRCh37)
- Canonical SPDI:
- NC_000010.11:59228435:GTGGT:GT
- Gene:
- PHYHIPL (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
GT=0./0
(
ALFA)
-=0.000008/2
(TOPMED)
-=0.000021/3
(GnomAD)
- HGVS:
10.
rs1490947276 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- T>C
[Show Flanks]
- Chromosome:
- 10:59179539
(GRCh38)
10:60939299
(GRCh37)
- Canonical SPDI:
- NC_000010.11:59179538:T:C
- Gene:
- PHYHIPL (Varview)
- Functional Consequence:
- genic_upstream_transcript_variant,intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
C=0./0
(
ALFA)
C=0.000007/1
(GnomAD)
C=0.000008/2
(TOPMED)
- HGVS:
12.
rs1490883425 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- C>T
[Show Flanks]
- Chromosome:
- 10:59225496
(GRCh38)
10:60985256
(GRCh37)
- Canonical SPDI:
- NC_000010.11:59225495:C:T
- Gene:
- PHYHIPL (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
T=0./0
(
ALFA)
T=0.000004/1
(TOPMED)
T=0.000007/1
(GnomAD)
- HGVS:
13.
rs1490873164 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- T>G
[Show Flanks]
- Chromosome:
- 10:59173431
(GRCh38)
10:60933191
(GRCh37)
- Canonical SPDI:
- NC_000010.11:59173430:T:G
- Gene:
- PHYHIPL (Varview)
- Functional Consequence:
- 2KB_upstream_variant,upstream_transcript_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
G=0.000671/3
(
ALFA)
G=0.000021/3
(GnomAD)
G=0.00067/3
(Estonian)
- HGVS:
14.
rs1490788921 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- T>C
[Show Flanks]
- Chromosome:
- 10:59206136
(GRCh38)
10:60965896
(GRCh37)
- Canonical SPDI:
- NC_000010.11:59206135:T:C
- Gene:
- PHYHIPL (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa
- MAF:
C=0./0
(
ALFA)
C=0.000021/3
(GnomAD)
- HGVS:
15.
rs1490781061 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- C>T
[Show Flanks]
- Chromosome:
- 10:59214669
(GRCh38)
10:60974429
(GRCh37)
- Canonical SPDI:
- NC_000010.11:59214668:C:T
- Gene:
- PHYHIPL (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
T=0./0
(
ALFA)
T=0.000007/1
(GnomAD)
T=0.000026/7
(TOPMED)
- HGVS:
16.
rs1490757049 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- A>T
[Show Flanks]
- Chromosome:
- 10:59246916
(GRCh38)
10:61006676
(GRCh37)
- Canonical SPDI:
- NC_000010.11:59246915:A:T
- Gene:
- PHYHIPL (Varview), FAM13C (Varview)
- Functional Consequence:
- 3_prime_UTR_variant,genic_downstream_transcript_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
T=0.000224/1
(
ALFA)
T=0.000007/1
(GnomAD)
T=0.000223/1
(Estonian)
- HGVS:
NC_000010.11:g.59246916A>T, NC_000010.10:g.61006676A>T, NG_053188.1:g.121272T>A, NM_198215.4:c.*698T>A, NM_198215.3:c.*699T>A, NM_001001971.3:c.*698T>A, NM_001001971.2:c.*699T>A, NM_001347850.2:c.*698T>A, NM_001347850.1:c.*699T>A, NM_001166698.2:c.*698T>A, NM_001166698.1:c.*699T>A, NM_001347840.2:c.*698T>A, NM_001347840.1:c.*699T>A, NM_001347842.2:c.*698T>A, NM_001347842.1:c.*699T>A, NM_001347848.1:c.*699T>A, NM_001347847.1:c.*699T>A, NM_001347844.1:c.*699T>A, NM_001143773.1:c.*699T>A, NM_001347843.1:c.*699T>A, NM_001347845.1:c.*699T>A, XM_005269618.5:c.*698T>A, XM_005269618.4:c.*698T>A, XM_005269618.3:c.*698T>A, XM_005269618.2:c.*698T>A, XM_005269618.1:c.*698T>A, XM_005269619.5:c.*698T>A, XM_005269619.4:c.*698T>A, XM_005269619.3:c.*698T>A, XM_005269619.2:c.*698T>A, XM_005269619.1:c.*698T>A, XM_011540276.4:c.*1325A>T, XM_011540276.3:c.*1325A>T, XM_011540276.2:c.*1325A>T, XM_011540276.1:c.*1325A>T, XM_011540275.4:c.*1325A>T, XM_011540275.3:c.*1325A>T, XM_011540275.2:c.*1325A>T, XM_011540275.1:c.*1325A>T, NM_032439.4:c.*1325A>T, NM_032439.3:c.*1325A>T, XM_006717702.4:c.*698T>A, XM_006717702.3:c.*698T>A, XM_006717702.2:c.*698T>A, XM_006717702.1:c.*698T>A, XM_017016783.3:c.*1325A>T, XM_017016783.2:c.*1325A>T, XM_017016783.1:c.*1325A>T, XM_024447880.2:c.*698T>A, XM_024447880.1:c.*698T>A, NM_001143774.2:c.*1325A>T, NM_001143774.1:c.*1325A>T, XM_017015886.2:c.*698T>A, XM_017015886.1:c.*698T>A, XM_017016782.2:c.*1325A>T, XM_017016782.1:c.*1325A>T, XM_017015891.2:c.*698T>A, XM_017015891.1:c.*698T>A, XM_024447881.2:c.*698T>A, XM_024447881.1:c.*698T>A, XM_047424761.1:c.*698T>A
17.
rs1490708458 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- G>A
[Show Flanks]
- Chromosome:
- 10:59232260
(GRCh38)
10:60992020
(GRCh37)
- Canonical SPDI:
- NC_000010.11:59232259:G:A
- Gene:
- PHYHIPL (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa
- MAF:
A=0./0
(
ALFA)
A=0.000015/4
(TOPMED)
- HGVS:
18.
rs1490706778 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- G>A
[Show Flanks]
- Chromosome:
- 10:59216951
(GRCh38)
10:60976711
(GRCh37)
- Canonical SPDI:
- NC_000010.11:59216950:G:A
- Gene:
- PHYHIPL (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
A=0./0
(
ALFA)
A=0.000004/1
(TOPMED)
A=0.000007/1
(GnomAD)
A=0.000156/1
(1000Genomes)
- HGVS:
20.
rs1490565486 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- T>G
[Show Flanks]
- Chromosome:
- 10:59192061
(GRCh38)
10:60951821
(GRCh37)
- Canonical SPDI:
- NC_000010.11:59192060:T:G
- Gene:
- PHYHIPL (Varview)
- Functional Consequence:
- genic_upstream_transcript_variant,intron_variant
- Validated:
- by frequency,by alfa
- MAF:
G=0./0
(
ALFA)
G=0.000007/1
(GnomAD)
- HGVS: