SNP Links for Gene (Select 84190) - SNP

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Select item 14915032471.

rs1491503247 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->TTA [Show Flanks]
Chromosome:: 12:82435024 (GRCh38)
12:82828804 (GRCh37)
Canonical SPDI:: NC_000012.12:82435024:TTA:TTATTA
Gene:: METTL25 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTATTA=0./0 (ALFA)
TTA=0.000007/1 (GnomAD)
TTA=0.000011/3 (TOPMED)
HGVS:: NC_000012.12:g.82435025_82435027dup, NC_000012.11:g.82828804_82828806dup, NG_053173.2:g.81620_81622dup

Select item 14914818562.

rs1491481856 [Homo sapiens]

Variant type:: DELINS
Alleles:: AT>- [Show Flanks]
Chromosome:: 12:82461260 (GRCh38)
12:82855039 (GRCh37)
Canonical SPDI:: NC_000012.12:82461254:TATATAT:TATAT
Gene:: METTL25 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TATAT=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000007/1 (GnomAD)
HGVS:: NC_000012.12:g.82461256AT[2], NC_000012.11:g.82855035AT[2], NG_053173.2:g.107851AT[2]

Select item 14914471313.

rs1491447131 [Homo sapiens]

Variant type:: DEL
Alleles:: AT>- [Show Flanks]
Chromosome:: 12:82381473 (GRCh38)
12:82775252 (GRCh37)
Canonical SPDI:: NC_000012.12:82381472:AT:
Gene:: METTL25 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.000007/1 (GnomAD)
-=0.000008/2 (TOPMED)
HGVS:: NC_000012.12:g.82381473_82381474del, NC_000012.11:g.82775252_82775253del, NG_053173.2:g.28068_28069del

Select item 14913339304.

rs1491333930 has merged into rs144093930 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAA>-,A,AA,AAAA [Show Flanks]
Chromosome:: 12:82375451 (GRCh38)
12:82769230 (GRCh37)
Canonical SPDI:: NC_000012.12:82375442:AAAAAAAAAAA:AAAAAAAA,NC_000012.12:82375442:AAAAAAAAAAA:AAAAAAAAA,NC_000012.12:82375442:AAAAAAAAAAA:AAAAAAAAAA,NC_000012.12:82375442:AAAAAAAAAAA:AAAAAAAAAAAA
Gene:: METTL25 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAA=0./0 (ALFA)
A=0.000071/1 (TOMMO)
A=0.00173/2 (Korea1K)
-=0.025/1 (GENOME_DK)
-=0.056338/16 (NorthernSweden)
-=0.0646/17099 (TOPMED)
HGVS:: NC_000012.12:g.82375451_82375453del, NC_000012.12:g.82375452_82375453del, NC_000012.12:g.82375453del, NC_000012.12:g.82375453dup, NC_000012.11:g.82769230_82769232del, NC_000012.11:g.82769231_82769232del, NC_000012.11:g.82769232del, NC_000012.11:g.82769232dup, NG_053173.2:g.22046_22048del, NG_053173.2:g.22047_22048del, NG_053173.2:g.22048del, NG_053173.2:g.22048dup

Select item 14913260635.

rs1491326063 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->A [Show Flanks]
Chromosome:: 12:82461255 (GRCh38)
12:82855035 (GRCh37)
Canonical SPDI:: NC_000012.12:82461255:A:AA
Gene:: METTL25 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AA=0./0 (ALFA)
A=0.000011/3 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000012.12:g.82461256dup, NC_000012.11:g.82855035dup, NG_053173.2:g.107851dup

Select item 14913075956.

rs1491307595 has merged into rs60688459 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTTT>-,T,TT,TTT,TTTTT,TTTTTT [Show Flanks]
Chromosome:: 12:82429388 (GRCh38)
12:82823167 (GRCh37)
Canonical SPDI:: NC_000012.12:82429376:TTTTTTTTTTTTTTT:TTTTTTTTTTT,NC_000012.12:82429376:TTTTTTTTTTTTTTT:TTTTTTTTTTTT,NC_000012.12:82429376:TTTTTTTTTTTTTTT:TTTTTTTTTTTTT,NC_000012.12:82429376:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000012.12:82429376:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000012.12:82429376:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT
Gene:: METTL25 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTTTTT=0.0125/55 (ALFA)
TT=0.0505/253 (1000Genomes)
HGVS:: NC_000012.12:g.82429388_82429391del, NC_000012.12:g.82429389_82429391del, NC_000012.12:g.82429390_82429391del, NC_000012.12:g.82429391del, NC_000012.12:g.82429391dup, NC_000012.12:g.82429390_82429391dup, NC_000012.11:g.82823167_82823170del, NC_000012.11:g.82823168_82823170del, NC_000012.11:g.82823169_82823170del, NC_000012.11:g.82823170del, NC_000012.11:g.82823170dup, NC_000012.11:g.82823169_82823170dup, NG_053173.2:g.75983_75986del, NG_053173.2:g.75984_75986del, NG_053173.2:g.75985_75986del, NG_053173.2:g.75986del, NG_053173.2:g.75986dup, NG_053173.2:g.75985_75986dup

Select item 14912518917.

rs1491251891 has merged into rs72397374 [Homo sapiens]

Variant type:: DELINS
Alleles:: GT>-,GTGT [Show Flanks]
Chromosome:: 12:82380435 (GRCh38)
12:82774214 (GRCh37)
Canonical SPDI:: NC_000012.12:82380433:TGT:T,NC_000012.12:82380433:TGT:TGTGT
Gene:: METTL25 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TGT=0.0625/359 (ALFA)
TG=0.004/67 (TOMMO)
TG=0.00943/2 (Vietnamese)
TG=0.02305/23 (GoNL)
TG=0.02667/16 (NorthernSweden)
TG=0.02879/129 (Estonian)
TG=0.0445/165 (TWINSUK)
TG=0.04567/176 (ALSPAC)
TG=0.05/2 (GENOME_DK)
HGVS:: NC_000012.12:g.82380435_82380436del, NC_000012.12:g.82380435_82380436dup, NC_000012.11:g.82774214_82774215del, NC_000012.11:g.82774214_82774215dup, NG_053173.2:g.27030_27031del, NG_053173.2:g.27030_27031dup

Select item 14911976388.

rs1491197638 [Homo sapiens]

Variant type:: DEL
Alleles:: GA>- [Show Flanks]
Chromosome:: 12:82375442 (GRCh38)
12:82769221 (GRCh37)
Canonical SPDI:: NC_000012.12:82375441:GA:
Gene:: METTL25 (Varview)
Functional Consequence:: intron_variant
HGVS:: NC_000012.12:g.82375442_82375443del, NC_000012.11:g.82769221_82769222del, NG_053173.2:g.22037_22038del

Select item 14911945109.

rs1491194510 [Homo sapiens]

Variant type:: SNV:
Alleles:: CT>-
Chromosome:: no mapping
Canonical SPDI:

Select item 149117749010.

rs1491177490 [Homo sapiens]

Variant type:: DEL
Alleles:: GT>- [Show Flanks]
Chromosome:: 12:82429376 (GRCh38)
12:82823155 (GRCh37)
Canonical SPDI:: NC_000012.12:82429375:GT:
Gene:: METTL25 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: -=0.00017/2 (ALFA)
HGVS:: NC_000012.12:g.82429376_82429377del, NC_000012.11:g.82823155_82823156del, NG_053173.2:g.75971_75972del

Select item 149107678811.

rs1491076788 has merged into rs58370071 [Homo sapiens]

Variant type:: DELINS
Alleles:: TT>-,T,TTT,TTTT,TTTTT,TTTTTTTTT,TTTTTTTTTTT,TTTTTTTTTTTTTT,TTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTT [Show Flanks]
Chromosome:: 12:82438526 (GRCh38)
12:82832305 (GRCh37)
Canonical SPDI:: NC_000012.12:82438512:TTTTTTTTTTTTTTT:TTTTTTTTTTTTT,NC_000012.12:82438512:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000012.12:82438512:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000012.12:82438512:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000012.12:82438512:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT,NC_000012.12:82438512:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTT,NC_000012.12:82438512:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTT,NC_000012.12:82438512:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000012.12:82438512:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000012.12:82438512:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
Gene:: METTL25 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTTTTTTTTTTT=0./0 (ALFA)
-=0.25/10 (GENOME_DK)
HGVS:: NC_000012.12:g.82438526_82438527del, NC_000012.12:g.82438527del, NC_000012.12:g.82438527dup, NC_000012.12:g.82438526_82438527dup, NC_000012.12:g.82438525_82438527dup, NC_000012.12:g.82438521_82438527dup, NC_000012.12:g.82438519_82438527dup, NC_000012.12:g.82438516_82438527dup, NC_000012.12:g.82438514_82438527dup, NC_000012.12:g.82438527_82438528insTTTTTTTTTTTTTTTTTT, NC_000012.11:g.82832305_82832306del, NC_000012.11:g.82832306del, NC_000012.11:g.82832306dup, NC_000012.11:g.82832305_82832306dup, NC_000012.11:g.82832304_82832306dup, NC_000012.11:g.82832300_82832306dup, NC_000012.11:g.82832298_82832306dup, NC_000012.11:g.82832295_82832306dup, NC_000012.11:g.82832293_82832306dup, NC_000012.11:g.82832306_82832307insTTTTTTTTTTTTTTTTTT, NG_053173.2:g.85121_85122del, NG_053173.2:g.85122del, NG_053173.2:g.85122dup, NG_053173.2:g.85121_85122dup, NG_053173.2:g.85120_85122dup, NG_053173.2:g.85116_85122dup, NG_053173.2:g.85114_85122dup, NG_053173.2:g.85111_85122dup, NG_053173.2:g.85109_85122dup, NG_053173.2:g.85122_85123insTTTTTTTTTTTTTTTTTT

Select item 149107650412.

rs1491076504 [Homo sapiens]

Variant type:: DELINS
Alleles:: AT>- [Show Flanks]
Chromosome:: 12:82375461 (GRCh38)
12:82769240 (GRCh37)
Canonical SPDI:: NC_000012.12:82375452:ATATATATAT:ATATATAT
Gene:: METTL25 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: ATATATAT=0.000253/3 (ALFA)
-=0.000351/49 (GnomAD)
HGVS:: NC_000012.12:g.82375453AT[4], NC_000012.11:g.82769232AT[4], NG_053173.2:g.22048AT[4]

Select item 149107178113.

rs1491071781 [Homo sapiens]

Variant type:: DELINS
Alleles:: GT>- [Show Flanks]
Chromosome:: 12:82384397 (GRCh38)
12:82778176 (GRCh37)
Canonical SPDI:: NC_000012.12:82384395:TGT:T
Gene:: METTL25 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0.00008/1 (ALFA)
-=0.00019/17 (GnomAD)
HGVS:: NC_000012.12:g.82384397_82384398del, NC_000012.11:g.82778176_82778177del, NG_053173.2:g.30992_30993del

Select item 149105872314.

rs1491058723 [Homo sapiens]

Variant type:: DELINS
Alleles:: CT>-,CTCT [Show Flanks]
Chromosome:: 12:82387734 (GRCh38)
12:82781513 (GRCh37)
Canonical SPDI:: NC_000012.12:82387731:CTCT:CT,NC_000012.12:82387731:CTCT:CTCTCT
Gene:: METTL25 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CTCT=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000012.12:g.82387732CT[1], NC_000012.12:g.82387732CT[3], NC_000012.11:g.82781511CT[1], NC_000012.11:g.82781511CT[3], NG_053173.2:g.34327CT[1], NG_053173.2:g.34327CT[3]

Select item 149105774815.

rs1491057748 [Homo sapiens]

Variant type:: SNV:
Alleles:: ->AAAAAAAA
Chromosome:: no mapping
Canonical SPDI:

Select item 149098146916.

rs1490981469 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 12:82374809 (GRCh38)
12:82768588 (GRCh37)
Canonical SPDI:: NC_000012.12:82374808:C:G
Gene:: METTL25 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000012.12:g.82374809C>G, NC_000012.11:g.82768588C>G, NG_053173.2:g.21404C>G

Select item 149096758917.

rs1490967589 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 12:82469489 (GRCh38)
12:82863268 (GRCh37)
Canonical SPDI:: NC_000012.12:82469488:T:G
Gene:: METTL25 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000012.12:g.82469489T>G, NC_000012.11:g.82863268T>G, NG_053173.2:g.116084T>G

Select item 149094876218.

rs1490948762 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 12:82454567 (GRCh38)
12:82848346 (GRCh37)
Canonical SPDI:: NC_000012.12:82454566:G:A
Gene:: METTL25 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000019/5 (TOPMED)
A=0.000156/1 (1000Genomes)
A=0.000546/1 (Korea1K)
HGVS:: NC_000012.12:g.82454567G>A, NC_000012.11:g.82848346G>A, NG_053173.2:g.101162G>A

Select item 149091288719.

rs1490912887 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 12:82411450 (GRCh38)
12:82805229 (GRCh37)
Canonical SPDI:: NC_000012.12:82411449:G:C
Gene:: METTL25 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000012.12:g.82411450G>C, NC_000012.11:g.82805229G>C, NG_053173.2:g.58045G>C

Select item 149085376720.

rs1490853767 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 12:82437656 (GRCh38)
12:82831435 (GRCh37)
Canonical SPDI:: NC_000012.12:82437655:A:C
Gene:: METTL25 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000012.12:g.82437656A>C, NC_000012.11:g.82831435A>C, NG_053173.2:g.84251A>C

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