SNP Links for Gene (Select 8387) - SNP

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Select item 14915522931.

rs1491552293 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->GAA [Show Flanks]
Chromosome:: 17:3399298 (GRCh38)
17:3302593 (GRCh37)
Canonical SPDI:: NC_000017.11:3399298:AAGAA:AAGAAGAA
Gene:: OR1E1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAGAAGAA=0.000084/1 (ALFA)
AAG=0.00382/415 (GnomAD)
HGVS:: NC_000017.11:g.3399301_3399303dup, NC_000017.10:g.3302595_3302597dup

Select item 14914889002.

rs1491488900 has merged into rs1376888843 [Homo sapiens]

Variant type:: DELINS
Alleles:: AA>-,A,AAA,AAAA [Show Flanks]
Chromosome:: 17:3399299 (GRCh38)
17:3302593 (GRCh37)
Canonical SPDI:: NC_000017.11:3399297:AAA:A,NC_000017.11:3399297:AAA:AA,NC_000017.11:3399297:AAA:AAAA,NC_000017.11:3399297:AAA:AAAAA
Gene:: OR1E1 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAA=0./0 (ALFA)
-=0.0006/9 (TOMMO)
-=0.00119/2 (Korea1K)
-=0.00168/1 (NorthernSweden)
HGVS:: NC_000017.11:g.3399299_3399300del, NC_000017.11:g.3399300del, NC_000017.11:g.3399300dup, NC_000017.11:g.3399299_3399300dup, NC_000017.10:g.3302593_3302594del, NC_000017.10:g.3302594del, NC_000017.10:g.3302594dup, NC_000017.10:g.3302593_3302594dup

Select item 14913561413.

rs1491356141 [Homo sapiens]

Variant type:: DELINS
Alleles:: AA>-,A,AAAA,AACAAA [Show Flanks]
Chromosome:: 17:3399295 (GRCh38)
17:3302589 (GRCh37)
Canonical SPDI:: NC_000017.11:3399293:AAA:A,NC_000017.11:3399293:AAA:AA,NC_000017.11:3399293:AAA:AAAAA,NC_000017.11:3399293:AAA:AAACAAA
Gene:: OR1E1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAA=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.0001/6 (GnomAD)
HGVS:: NC_000017.11:g.3399295_3399296del, NC_000017.11:g.3399296del, NC_000017.11:g.3399295_3399296dup, NC_000017.11:g.3399296_3399297insCAAA, NC_000017.10:g.3302589_3302590del, NC_000017.10:g.3302590del, NC_000017.10:g.3302589_3302590dup, NC_000017.10:g.3302590_3302591insCAAA

Select item 14913304954.

rs1491330495 [Homo sapiens]

Variant type:: DELINS
Alleles:: GA>-,GAGA [Show Flanks]
Chromosome:: 17:3399275 (GRCh38)
17:3302569 (GRCh37)
Canonical SPDI:: NC_000017.11:3399273:AGA:A,NC_000017.11:3399273:AGA:AGAGA
Gene:: OR1E1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.00017/2 (ALFA)
AG=0.00064/13 (TOMMO)
-=0.00217/105 (GnomAD)
HGVS:: NC_000017.11:g.3399275_3399276del, NC_000017.11:g.3399275_3399276dup, NC_000017.10:g.3302569_3302570del, NC_000017.10:g.3302569_3302570dup

Select item 14913207285.

rs1491320728 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->GAAAGAA [Show Flanks]
Chromosome:: 17:3399294 (GRCh38)
17:3302589 (GRCh37)
Canonical SPDI:: NC_000017.11:3399294:AAGAAAGAA:AAGAAAGAAGAAAGAA
Gene:: OR1E1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: AAGAAAGAAGAAAGAA=0.00017/2 (ALFA)
HGVS:: NC_000017.11:g.3399297_3399303dup, NC_000017.10:g.3302591_3302597dup

Select item 14912050356.

rs1491205035 [Homo sapiens]

Variant type:: INS
Alleles:: ->AG,AGGAAAG,AGGAAAGGAAAG [Show Flanks]
Chromosome:: 17:3399274 (GRCh38)
17:3302569 (GRCh37)
Canonical SPDI:: NC_000017.11:3399274::AG,NC_000017.11:3399274::AGGAAAG,NC_000017.11:3399274::AGGAAAGGAAAG
Gene:: OR1E1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AGGAAAG=0./0 (ALFA)
AG=0.03378/20 (NorthernSweden)
HGVS:: NC_000017.11:g.3399274_3399275insAG, NC_000017.11:g.3399274_3399275insAGGAAAG, NC_000017.11:g.3399274_3399275insAGGAAAGGAAAG, NC_000017.10:g.3302568_3302569insAG, NC_000017.10:g.3302568_3302569insAGGAAAG, NC_000017.10:g.3302568_3302569insAGGAAAGGAAAG

Select item 14910680967.

rs1491068096 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->AGAAA [Show Flanks]
Chromosome:: 17:3399293 (GRCh38)
17:3302588 (GRCh37)
Canonical SPDI:: NC_000017.11:3399293:AAAGAAA:AAAGAAAAGAAA
Gene:: OR1E1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: AAAGAAAAGAAA=0./0 (ALFA)
AAAGA=0.00007/4 (GnomAD)
HGVS:: NC_000017.11:g.3399296_3399300dup, NC_000017.10:g.3302590_3302594dup

Select item 14910415138.

rs1491041513 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->AGAAAGA [Show Flanks]
Chromosome:: 17:3399330 (GRCh38)
17:3302625 (GRCh37)
Canonical SPDI:: NC_000017.11:3399330:AAGAAAGA:AAGAAAGAAGAAAGA
Gene:: OR1E1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: AAGAAAGAAGAAAGA=0./0 (ALFA)
HGVS:: NC_000017.11:g.3399332_3399338dup, NC_000017.10:g.3302626_3302632dup

Select item 14905392679.

rs1490539267 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 17:3399874 (GRCh38)
17:3303168 (GRCh37)
Canonical SPDI:: NC_000017.11:3399873:A:G
Gene:: OR1E1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000017.11:g.3399874A>G, NC_000017.10:g.3303168A>G

Select item 148933804610.

rs1489338046 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 17:3398369 (GRCh38)
17:3301663 (GRCh37)
Canonical SPDI:: NC_000017.11:3398368:G:A
Gene:: OR1E1 (Varview)
Functional Consequence:: synonymous_variant,coding_sequence_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (GnomAD_exomes)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000017.11:g.3398369G>A, NC_000017.10:g.3301663G>A, NM_003553.3:c.42C>T, NM_003553.2:c.42C>T

Select item 148932852011.

rs1489328520 has merged into rs1214142819 [Homo sapiens]

Variant type:: DELINS
Alleles:: GGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAA>-,GGAA,GGAAGGAA,GGAAGGAAGGAA,GGAAGGAAGGAAGGAA,GGAAGGAAGGAAGGAAGGAA,GGAAGGAAGGAAGGAAGGAAGGAA,GGAAGGAAGGAAGGAAGGAAGGAAGGAA,GGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAA,GGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAA,GGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAA,GGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAA,GGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAA [Show Flanks]
Chromosome:: 17:3399233 (GRCh38)
17:3302527 (GRCh37)
Canonical SPDI:: NC_000017.11:3399209:GAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAA:GAAGGAAGGAAGGAAGGAAGGAA,NC_000017.11:3399209:GAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAA:GAAGGAAGGAAGGAAGGAAGGAAGGAA,NC_000017.11:3399209:GAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAA:GAAGGAAGGAAGGAAGGAAGGAAGGAAGGAA,NC_000017.11:3399209:GAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAA:GAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAA,NC_000017.11:3399209:GAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAA:GAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAA,NC_000017.11:3399209:GAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAA:GAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAA,NC_000017.11:3399209:GAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAA:GAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAA,NC_000017.11:3399209:GAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAA:GAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAA,NC_000017.11:3399209:GAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAA:GAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAA,NC_000017.11:3399209:GAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAA:GAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAA,NC_000017.11:3399209:GAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAA:GAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAA,NC_000017.11:3399209:GAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAA:GAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAA,NC_000017.11:3399209:GAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAA:GAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAA
Gene:: OR1E1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GAAGGAAGGAAGGAAGGAAGGAAGGAA=0./0 (ALFA)
HGVS:: NC_000017.11:g.3399213GGAA[5], NC_000017.11:g.3399213GGAA[6], NC_000017.11:g.3399213GGAA[7], NC_000017.11:g.3399213GGAA[8], NC_000017.11:g.3399213GGAA[9], NC_000017.11:g.3399213GGAA[10], NC_000017.11:g.3399213GGAA[11], NC_000017.11:g.3399213GGAA[12], NC_000017.11:g.3399213GGAA[14], NC_000017.11:g.3399213GGAA[15], NC_000017.11:g.3399213GGAA[16], NC_000017.11:g.3399213GGAA[17], NC_000017.11:g.3399213GGAA[18], NC_000017.10:g.3302507GGAA[5], NC_000017.10:g.3302507GGAA[6], NC_000017.10:g.3302507GGAA[7], NC_000017.10:g.3302507GGAA[8], NC_000017.10:g.3302507GGAA[9], NC_000017.10:g.3302507GGAA[10], NC_000017.10:g.3302507GGAA[11], NC_000017.10:g.3302507GGAA[12], NC_000017.10:g.3302507GGAA[14], NC_000017.10:g.3302507GGAA[15], NC_000017.10:g.3302507GGAA[16], NC_000017.10:g.3302507GGAA[17], NC_000017.10:g.3302507GGAA[18]

Select item 148903777612.

rs1489037776 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G,T [Show Flanks]
Chromosome:: 17:3399176 (GRCh38)
17:3302470 (GRCh37)
Canonical SPDI:: NC_000017.11:3399175:A:G,NC_000017.11:3399175:A:T
Gene:: OR1E1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
G=0.000031/1 (GnomAD)
HGVS:: NC_000017.11:g.3399176A>G, NC_000017.11:g.3399176A>T, NC_000017.10:g.3302470A>G, NC_000017.10:g.3302470A>T

Select item 148785973713.

rs1487859737 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 17:3399236 (GRCh38)
17:3302530 (GRCh37)
Canonical SPDI:: NC_000017.11:3399235:A:G
Gene:: OR1E1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.00001/1 (GnomAD)
HGVS:: NC_000017.11:g.3399236A>G, NC_000017.10:g.3302530A>G

Select item 148753302814.

rs1487533028 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->GAAAGGAAAGGAAAGGAAG,GAAAGGAAAGGAAG,GAAAGGAAG,GAAG [Show Flanks]
Chromosome:: 17:3399276 (GRCh38)
17:3302571 (GRCh37)
Canonical SPDI:: NC_000017.11:3399276:AAG:AAGGAAAGGAAAGGAAAGGAAG,NC_000017.11:3399276:AAG:AAGGAAAGGAAAGGAAG,NC_000017.11:3399276:AAG:AAGGAAAGGAAG,NC_000017.11:3399276:AAG:AAGGAAG
Gene:: OR1E1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by cluster
HGVS:: NC_000017.11:g.3399277_3399279AAGGA[4]AG[1], NC_000017.11:g.3399277_3399279AAGGA[3]AG[1], NC_000017.11:g.3399277_3399279AAGGA[2]AG[1], NC_000017.11:g.3399279_3399280insGAAG, NC_000017.10:g.3302571_3302573AAGGA[4]AG[1], NC_000017.10:g.3302571_3302573AAGGA[3]AG[1], NC_000017.10:g.3302571_3302573AAGGA[2]AG[1], NC_000017.10:g.3302573_3302574insGAAG

Select item 148719943115.

rs1487199431 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 17:3398647 (GRCh38)
17:3301941 (GRCh37)
Canonical SPDI:: NC_000017.11:3398646:T:A
Gene:: OR1E1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000011/3 (TOPMED)
A=0.000021/3 (GnomAD)
HGVS:: NC_000017.11:g.3398647T>A, NC_000017.10:g.3301941T>A

Select item 148648769916.

rs1486487699 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 17:3399597 (GRCh38)
17:3302891 (GRCh37)
Canonical SPDI:: NC_000017.11:3399596:C:A
Gene:: OR1E1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000014/2 (GnomAD)
HGVS:: NC_000017.11:g.3399597C>A, NC_000017.10:g.3302891C>A

Select item 148576676817.

rs1485766768 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 17:3398399 (GRCh38)
17:3301693 (GRCh37)
Canonical SPDI:: NC_000017.11:3398398:T:C
Gene:: OR1E1 (Varview)
Functional Consequence:: synonymous_variant,coding_sequence_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000017.11:g.3398399T>C, NC_000017.10:g.3301693T>C, NM_003553.3:c.12A>G, NM_003553.2:c.12A>G

Select item 148571515318.

rs1485715153 [Homo sapiens]

Variant type:: DELINS
Alleles:: AGAAAGAAAGAAAGAAAGAAGGAAGGAAGGAA>- [Show Flanks]
Chromosome:: 17:3399193 (GRCh38)
17:3302487 (GRCh37)
Canonical SPDI:: NC_000017.11:3399189:GAAAGAAAGAAAGAAAGAAAGAAGGAAGGAAGGAA:GAA
Gene:: OR1E1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: GAA=0./0 (ALFA)
-=0.00012/6 (GnomAD)
HGVS:: NC_000017.11:g.3399193_3399224del, NC_000017.10:g.3302487_3302518del

Select item 148513365719.

rs1485133657 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 17:3399173 (GRCh38)
17:3302467 (GRCh37)
Canonical SPDI:: NC_000017.11:3399172:A:G
Gene:: OR1E1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000017.11:g.3399173A>G, NC_000017.10:g.3302467A>G

Select item 148473219620.

rs1484732196 [Homo sapiens]

Variant type:: DELINS
Alleles:: GGAAGGAAGGAAGGAAGGA>- [Show Flanks]
Chromosome:: 17:3399233 (GRCh38)
17:3302527 (GRCh37)
Canonical SPDI:: NC_000017.11:3399231:AGGAAGGAAGGAAGGAAGGA:A
Gene:: OR1E1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000017.11:g.3399233_3399251del, NC_000017.10:g.3302527_3302545del

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