SNP Links for Gene (Select 83756) - SNP - NCBI

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Select item 14911195221.

rs1491119522 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->G [Show Flanks]
Chromosome:: 1:1335762 (GRCh38)
1:1271143 (GRCh37)
Canonical SPDI:: NC_000001.11:1335762:GGGGG:GGGGGG
Gene:: DVL1 (Varview), TAS1R3 (Varview)
Functional Consequence:: 3_prime_UTR_variant,downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GGGGGG=0./0 (ALFA)
G=0.000021/3 (GnomAD)
G=0.000049/13 (TOPMED)
G=0.000156/1 (1000Genomes)
G=0.000546/1 (Korea1K)
G=0.006477/109 (TOMMO)
HGVS:: NC_000001.11:g.1335767dup, NC_000001.10:g.1271147dup, NG_008048.2:g.18350dup, NM_004421.3:c.*379dup, NM_004421.2:c.*379dup, NM_001330311.2:c.*379dup, NM_001330311.1:c.*379dup, XM_005244732.5:c.*780dup, XM_005244732.4:c.*780dup, XM_005244733.5:c.*780dup, XM_005244733.4:c.*780dup, NM_182779.3:c.*379dup, NM_182779.2:c.*379dup, NM_181870.1:c.*379dup, XM_047448090.1:c.*379dup, NM_182779.1:c.*379dup

Select item 14908924382.

rs1490892438 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:1333040 (GRCh38)
1:1268420 (GRCh37)
Canonical SPDI:: NC_000001.11:1333039:G:A
Gene:: TAS1R3 (Varview)
Functional Consequence:: synonymous_variant,coding_sequence_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (GnomAD_exomes)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.1333040G>A, NC_000001.10:g.1268420G>A, NM_152228.3:c.1395G>A, NM_152228.2:c.1395G>A, NM_152228.1:c.1395G>A, XM_017002435.2:c.1395G>A, XM_017002435.1:c.1395G>A, XM_017002436.2:c.1395G>A, XM_017002436.1:c.1395G>A, XM_047431571.1:c.1395G>A

Select item 14904023753.

rs1490402375 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:1332825 (GRCh38)
1:1268205 (GRCh37)
Canonical SPDI:: NC_000001.11:1332824:G:A
Gene:: TAS1R3 (Varview)
Functional Consequence:: intron_variant
HGVS:: NC_000001.11:g.1332825G>A, NC_000001.10:g.1268205G>A

Select item 14902988894.

rs1490298889 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:1335394 (GRCh38)
1:1270774 (GRCh37)
Canonical SPDI:: NC_000001.11:1335393:T:C
Gene:: DVL1 (Varview), TAS1R3 (Varview)
Functional Consequence:: 3_prime_UTR_variant,downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by cluster
MAF:: C=0.0005/1 (Korea1K)
HGVS:: NC_000001.11:g.1335394T>C, NC_000001.10:g.1270774T>C, NG_008048.2:g.18719A>G, NM_004421.3:c.*748A>G, NM_004421.2:c.*748A>G, NM_001330311.2:c.*748A>G, NM_001330311.1:c.*748A>G, XM_005244732.5:c.*1149A>G, XM_005244732.4:c.*1149A>G, XM_005244733.5:c.*1149A>G, XM_005244733.4:c.*1149A>G, NM_182779.3:c.*748A>G, NM_182779.2:c.*748A>G, NM_181870.1:c.*748A>G, XM_047448090.1:c.*748A>G, NM_182779.1:c.*748A>G

Select item 14902113115.

rs1490211311 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 1:1334860 (GRCh38)
1:1270240 (GRCh37)
Canonical SPDI:: NC_000001.11:1334859:C:A,NC_000001.11:1334859:C:T
Gene:: DVL1 (Varview), TAS1R3 (Varview)
Functional Consequence:: 3_prime_UTR_variant,500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000001.11:g.1334860C>A, NC_000001.11:g.1334860C>T, NC_000001.10:g.1270240C>A, NC_000001.10:g.1270240C>T, NG_008048.2:g.19253G>T, NG_008048.2:g.19253G>A, NM_152228.3:c.*396C>A, NM_152228.3:c.*396C>T, NM_152228.2:c.*396C>A, NM_152228.2:c.*396C>T, XM_017002435.2:c.*396C>A, XM_017002435.2:c.*396C>T, XM_017002435.1:c.*396C>A, XM_017002435.1:c.*396C>T, XM_017002436.2:c.*396C>A, XM_017002436.2:c.*396C>T, XM_017002436.1:c.*396C>A, XM_017002436.1:c.*396C>T, XM_047431571.1:c.*396C>A, XM_047431571.1:c.*396C>T

Select item 14901729076.

rs1490172907 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:1332389 (GRCh38)
1:1267769 (GRCh37)
Canonical SPDI:: NC_000001.11:1332388:C:T
Gene:: TAS1R3 (Varview)
Functional Consequence:: synonymous_variant,coding_sequence_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.1332389C>T, NC_000001.10:g.1267769C>T, NM_152228.3:c.858C>T, NM_152228.2:c.858C>T, NM_152228.1:c.858C>T, XM_017002435.2:c.858C>T, XM_017002435.1:c.858C>T, XM_017002436.2:c.858C>T, XM_017002436.1:c.858C>T, XM_047431571.1:c.858C>T

Select item 14897907777.

rs1489790777 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:1334743 (GRCh38)
1:1270123 (GRCh37)
Canonical SPDI:: NC_000001.11:1334742:G:A
Gene:: TAS1R3 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000084/1 (ALFA)
A=0.000011/3 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000001.11:g.1334743G>A, NC_000001.10:g.1270123G>A, NG_008048.2:g.19370C>T, NM_152228.3:c.*279G>A, NM_152228.2:c.*279G>A, XM_017002435.2:c.*279G>A, XM_017002435.1:c.*279G>A, XM_017002436.2:c.*279G>A, XM_017002436.1:c.*279G>A, XM_047431571.1:c.*279G>A

Select item 14894449718.

rs1489444971 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 1:1331804 (GRCh38)
1:1267184 (GRCh37)
Canonical SPDI:: NC_000001.11:1331803:G:A,NC_000001.11:1331803:G:T
Gene:: TAS1R3 (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.00014/2 (TOMMO)
HGVS:: NC_000001.11:g.1331804G>A, NC_000001.11:g.1331804G>T, NC_000001.10:g.1267184G>A, NC_000001.10:g.1267184G>T, NM_152228.3:c.358G>A, NM_152228.3:c.358G>T, NM_152228.2:c.358G>A, NM_152228.2:c.358G>T, NM_152228.1:c.358G>A, NM_152228.1:c.358G>T, XM_017002435.2:c.358G>A, XM_017002435.2:c.358G>T, XM_017002435.1:c.358G>A, XM_017002435.1:c.358G>T, XM_017002436.2:c.358G>A, XM_017002436.2:c.358G>T, XM_017002436.1:c.358G>A, XM_017002436.1:c.358G>T, XM_047431571.1:c.358G>A, XM_047431571.1:c.358G>T, NP_689414.2:p.Ala120Thr, NP_689414.2:p.Ala120Ser, XP_016857924.1:p.Ala120Thr, XP_016857924.1:p.Ala120Ser, XP_016857925.1:p.Ala120Thr, XP_016857925.1:p.Ala120Ser, XP_047287527.1:p.Ala120Thr, XP_047287527.1:p.Ala120Ser

Select item 14893930899.

rs1489393089 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 1:1332220 (GRCh38)
1:1267600 (GRCh37)
Canonical SPDI:: NC_000001.11:1332219:C:G,NC_000001.11:1332219:C:T
Gene:: TAS1R3 (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant
Validated:: by frequency,by cluster
MAF:: T=0.00004/1 (TOMMO)
HGVS:: NC_000001.11:g.1332220C>G, NC_000001.11:g.1332220C>T, NC_000001.10:g.1267600C>G, NC_000001.10:g.1267600C>T, NM_152228.3:c.689C>G, NM_152228.3:c.689C>T, NM_152228.2:c.689C>G, NM_152228.2:c.689C>T, NM_152228.1:c.689C>G, NM_152228.1:c.689C>T, XM_017002435.2:c.689C>G, XM_017002435.2:c.689C>T, XM_017002435.1:c.689C>G, XM_017002435.1:c.689C>T, XM_017002436.2:c.689C>G, XM_017002436.2:c.689C>T, XM_017002436.1:c.689C>G, XM_017002436.1:c.689C>T, XM_047431571.1:c.689C>G, XM_047431571.1:c.689C>T, NP_689414.2:p.Ala230Gly, NP_689414.2:p.Ala230Val, XP_016857924.1:p.Ala230Gly, XP_016857924.1:p.Ala230Val, XP_016857925.1:p.Ala230Gly, XP_016857925.1:p.Ala230Val, XP_047287527.1:p.Ala230Gly, XP_047287527.1:p.Ala230Val

Select item 148871257010.

rs1488712570 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 1:1332464 (GRCh38)
1:1267844 (GRCh37)
Canonical SPDI:: NC_000001.11:1332463:G:T
Gene:: TAS1R3 (Varview)
Functional Consequence:: synonymous_variant,coding_sequence_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.1332464G>T, NC_000001.10:g.1267844G>T, NM_152228.3:c.933G>T, NM_152228.2:c.933G>T, NM_152228.1:c.933G>T, XM_017002435.2:c.933G>T, XM_017002435.1:c.933G>T, XM_017002436.2:c.933G>T, XM_017002436.1:c.933G>T, XM_047431571.1:c.933G>T

Select item 148869840611.

rs1488698406 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 1:1330496 (GRCh38)
1:1265876 (GRCh37)
Canonical SPDI:: NC_000001.11:1330495:A:C
Gene:: TAS1R3 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.001093/2 (Korea1K)
HGVS:: NC_000001.11:g.1330496A>C, NC_000001.10:g.1265876A>C

Select item 148858668312.

rs1488586683 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:1330120 (GRCh38)
1:1265500 (GRCh37)
Canonical SPDI:: NC_000001.11:1330119:C:T
Gene:: TAS1R3 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000001.11:g.1330120C>T, NC_000001.10:g.1265500C>T

Select item 148822541213.

rs1488225412 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 1:1334503 (GRCh38)
1:1269883 (GRCh37)
Canonical SPDI:: NC_000001.11:1334502:A:T
Gene:: TAS1R3 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency
MAF:: T=0.00001/1 (GnomAD_exomes)
HGVS:: NC_000001.11:g.1334503A>T, NC_000001.10:g.1269883A>T, NG_008048.2:g.19610T>A, NM_152228.3:c.*39A>T, NM_152228.2:c.*39A>T, XM_017002435.2:c.*39A>T, XM_017002435.1:c.*39A>T, XM_017002436.2:c.*39A>T, XM_017002436.1:c.*39A>T, XM_047431571.1:c.*39A>T

Select item 148814078114.

rs1488140781 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:1334197 (GRCh38)
1:1269577 (GRCh37)
Canonical SPDI:: NC_000001.11:1334196:C:T
Gene:: TAS1R3 (Varview)
Functional Consequence:: synonymous_variant,coding_sequence_variant
HGVS:: NC_000001.11:g.1334197C>T, NC_000001.10:g.1269577C>T, NG_008048.2:g.19916G>A, NM_152228.3:c.2292C>T, NM_152228.2:c.2292C>T, NM_152228.1:c.2292C>T, XM_017002435.2:c.2418C>T, XM_017002435.1:c.2418C>T, XM_017002436.2:c.2415C>T, XM_017002436.1:c.2415C>T, XM_047431571.1:c.2289C>T

Select item 148787527515.

rs1487875275 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 1:1332356 (GRCh38)
1:1267736 (GRCh37)
Canonical SPDI:: NC_000001.11:1332355:C:G,NC_000001.11:1332355:C:T
Gene:: TAS1R3 (Varview)
Functional Consequence:: synonymous_variant,coding_sequence_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000062/2 (ALFA)
T=0.000008/2 (TOPMED)
T=0.000018/4 (GnomAD_exomes)
HGVS:: NC_000001.11:g.1332356C>G, NC_000001.11:g.1332356C>T, NC_000001.10:g.1267736C>G, NC_000001.10:g.1267736C>T, NM_152228.3:c.825C>G, NM_152228.3:c.825C>T, NM_152228.2:c.825C>G, NM_152228.2:c.825C>T, NM_152228.1:c.825C>G, NM_152228.1:c.825C>T, XM_017002435.2:c.825C>G, XM_017002435.2:c.825C>T, XM_017002435.1:c.825C>G, XM_017002435.1:c.825C>T, XM_017002436.2:c.825C>G, XM_017002436.2:c.825C>T, XM_017002436.1:c.825C>G, XM_017002436.1:c.825C>T, XM_047431571.1:c.825C>G, XM_047431571.1:c.825C>T

Select item 148740303216.

rs1487403032 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:1335651 (GRCh38)
1:1271031 (GRCh37)
Canonical SPDI:: NC_000001.11:1335650:G:A
Gene:: DVL1 (Varview), TAS1R3 (Varview)
Functional Consequence:: 3_prime_UTR_variant,downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000008/2 (TOPMED)
HGVS:: NC_000001.11:g.1335651G>A, NC_000001.10:g.1271031G>A, NG_008048.2:g.18462C>T, NM_004421.3:c.*491C>T, NM_004421.2:c.*491C>T, NM_001330311.2:c.*491C>T, NM_001330311.1:c.*491C>T, XM_005244732.5:c.*892C>T, XM_005244732.4:c.*892C>T, XM_005244733.5:c.*892C>T, XM_005244733.4:c.*892C>T, NM_182779.3:c.*491C>T, NM_182779.2:c.*491C>T, NM_181870.1:c.*491C>T, XM_047448090.1:c.*491C>T, NM_182779.1:c.*491C>T

Select item 148666131317.

rs1486661313 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 1:1329650 (GRCh38)
1:1265030 (GRCh37)
Canonical SPDI:: NC_000001.11:1329649:T:G
Gene:: TAS1R3 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.1329650T>G, NC_000001.10:g.1265030T>G

Select item 148662566918.

rs1486625669 [Homo sapiens]

Variant type:: DELINS
Alleles:: TG>- [Show Flanks]
Chromosome:: 1:1329796 (GRCh38)
1:1265176 (GRCh37)
Canonical SPDI:: NC_000001.11:1329789:TGTGTGTG:TGTGTG
Gene:: TAS1R3 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TGTGTG=0.000071/1 (ALFA)
-=0.000087/12 (GnomAD)
-=0.000087/23 (TOPMED)
-=0.000142/2 (TOMMO)
HGVS:: NC_000001.11:g.1329790TG[3], NC_000001.10:g.1265170TG[3]

Select item 148653298619.

rs1486532986 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 1:1330146 (GRCh38)
1:1265526 (GRCh37)
Canonical SPDI:: NC_000001.11:1330145:C:G
Gene:: TAS1R3 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.1330146C>G, NC_000001.10:g.1265526C>G

Select item 148650467520.

rs1486504675 [Homo sapiens]

Variant type:: DELINS
Alleles:: C>- [Show Flanks]
Chromosome:: 1:1334404 (GRCh38)
1:1269784 (GRCh37)
Canonical SPDI:: NC_000001.11:1334403:CCC:CC
Gene:: TAS1R3 (Varview)
Functional Consequence:: frameshift_variant,coding_sequence_variant
Validated:: by frequency
MAF:: -=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000001.11:g.1334406del, NC_000001.10:g.1269786del, NG_008048.2:g.19709del, NM_152228.3:c.2501del, NM_152228.2:c.2501del, NM_152228.1:c.2501del, XM_017002435.2:c.2627del, XM_017002435.1:c.2627del, XM_017002436.2:c.2624del, XM_017002436.1:c.2624del, XM_047431571.1:c.2498del, NP_689414.2:p.Pro834fs, XP_016857924.1:p.Pro876fs, XP_016857925.1:p.Pro875fs, XP_047287527.1:p.Pro833fs

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