SNP Links for Gene (Select 8341) - SNP

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Select item 14913516631.

rs1491351663 [Homo sapiens]

Variant type:: DEL
Alleles:: CA>- [Show Flanks]
Chromosome:: 6:27837976 (GRCh38)
6:27805754 (GRCh37)
Canonical SPDI:: NC_000006.12:27837975:CA:
Gene:: H2AC15 (Varview), H2BC15 (Varview)
Functional Consequence:: coding_sequence_variant,2KB_upstream_variant,upstream_transcript_variant,frameshift_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0.000043/1 (ALFA)
-=0.000016/2 (ExAC)
-=0.00004/10 (GnomAD_exomes)
-=0.000053/14 (TOPMED)
-=0.000093/13 (GnomAD)
HGVS:: NC_000006.12:g.27837976_27837977del, NC_000006.11:g.27805754_27805755del, NM_003510.3:c.363_364del, NM_003510.2:c.363_364del, NP_003501.1:p.Ser123fs

Select item 14908769572.

rs1490876957 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 6:27838217 (GRCh38)
6:27805995 (GRCh37)
Canonical SPDI:: NC_000006.12:27838216:A:G
Gene:: H2AC15 (Varview), H2BC15 (Varview)
Functional Consequence:: coding_sequence_variant,2KB_upstream_variant,upstream_transcript_variant,synonymous_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000015/4 (TOPMED)
HGVS:: NC_000006.12:g.27838217A>G, NC_000006.11:g.27805995A>G, NM_003510.3:c.123T>C, NM_003510.2:c.123T>C

Select item 14908381483.

rs1490838148 [Homo sapiens]

Variant type:: DELINS
Alleles:: GACA>- [Show Flanks]
Chromosome:: 6:27839590 (GRCh38)
6:27807368 (GRCh37)
Canonical SPDI:: NC_000006.12:27839587:CAGACA:CA
Gene:: H2AC15 (Varview), H2BC15 (Varview)
Functional Consequence:: downstream_transcript_variant,2KB_upstream_variant,upstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa
MAF:: CA=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000006.12:g.27839590_27839593del, NC_000006.11:g.27807368_27807371del

Select item 14907728844.

rs1490772884 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 6:27837677 (GRCh38)
6:27805455 (GRCh37)
Canonical SPDI:: NC_000006.12:27837676:T:G
Gene:: H2AC15 (Varview), H2BC15 (Varview)
Functional Consequence:: downstream_transcript_variant,2KB_upstream_variant,upstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.27837677T>G, NC_000006.11:g.27805455T>G

Select item 14885362785.

rs1488536278 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 6:27837872 (GRCh38)
6:27805650 (GRCh37)
Canonical SPDI:: NC_000006.12:27837871:T:C
Gene:: H2AC15 (Varview), H2BC15 (Varview)
Functional Consequence:: downstream_transcript_variant,2KB_upstream_variant,upstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000006.12:g.27837872T>C, NC_000006.11:g.27805650T>C

Select item 14876728816.

rs1487672881 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 6:27839253 (GRCh38)
6:27807031 (GRCh37)
Canonical SPDI:: NC_000006.12:27839252:G:A,NC_000006.12:27839252:G:T
Gene:: H2AC15 (Varview), H2BC15 (Varview)
Functional Consequence:: downstream_transcript_variant,2KB_upstream_variant,upstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.27839253G>A, NC_000006.12:g.27839253G>T, NC_000006.11:g.27807031G>A, NC_000006.11:g.27807031G>T

Select item 14875009387.

rs1487500938 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 6:27836883 (GRCh38)
6:27804661 (GRCh37)
Canonical SPDI:: NC_000006.12:27836882:G:A
Gene:: H2BC15 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000006.12:g.27836883G>A, NC_000006.11:g.27804661G>A

Select item 14873966628.

rs1487396662 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 6:27837466 (GRCh38)
6:27805244 (GRCh37)
Canonical SPDI:: NC_000006.12:27837465:A:C
Gene:: H2AC15 (Varview), H2BC15 (Varview)
Functional Consequence:: downstream_transcript_variant,2KB_upstream_variant,upstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0.000029/4 (GnomAD)
C=0.00003/8 (TOPMED)
HGVS:: NC_000006.12:g.27837466A>C, NC_000006.11:g.27805244A>C

Select item 14873670589.

rs1487367058 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 6:27839323 (GRCh38)
6:27807101 (GRCh37)
Canonical SPDI:: NC_000006.12:27839322:G:A,NC_000006.12:27839322:G:C
Gene:: H2AC15 (Varview), H2BC15 (Varview)
Functional Consequence:: downstream_transcript_variant,2KB_upstream_variant,upstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.27839323G>A, NC_000006.12:g.27839323G>C, NC_000006.11:g.27807101G>A, NC_000006.11:g.27807101G>C

Select item 148393741110.

rs1483937411 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 6:27838077 (GRCh38)
6:27805855 (GRCh37)
Canonical SPDI:: NC_000006.12:27838076:A:T
Gene:: H2AC15 (Varview), H2BC15 (Varview)
Functional Consequence:: coding_sequence_variant,2KB_upstream_variant,missense_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000031/1 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.27838077A>T, NC_000006.11:g.27805855A>T, NM_003510.3:c.263T>A, NM_003510.2:c.263T>A, NP_003501.1:p.Ile88Asn

Select item 148373485311.

rs1483734853 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 6:27837968 (GRCh38)
6:27805746 (GRCh37)
Canonical SPDI:: NC_000006.12:27837967:G:A
Gene:: H2AC15 (Varview), H2BC15 (Varview)
Functional Consequence:: coding_sequence_variant,2KB_upstream_variant,upstream_transcript_variant,synonymous_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000006.12:g.27837968G>A, NC_000006.11:g.27805746G>A, NM_003510.3:c.372C>T, NM_003510.2:c.372C>T

Select item 148363551112.

rs1483635511 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->AG [Show Flanks]
Chromosome:: 6:27837207 (GRCh38)
6:27804986 (GRCh37)
Canonical SPDI:: NC_000006.12:27837207:AG:AGAG
Gene:: H2BC15 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: AGAG=0./0 (ALFA)
AG=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.27837208_27837209dup, NC_000006.11:g.27804986_27804987dup

Select item 148272707613.

rs1482727076 [Homo sapiens]

Variant type:: DELINS
Alleles:: ATCT>- [Show Flanks]
Chromosome:: 6:27837342 (GRCh38)
6:27805120 (GRCh37)
Canonical SPDI:: NC_000006.12:27837338:TCTATCT:TCT
Gene:: H2BC15 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TCT=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.27837342_27837345del, NC_000006.11:g.27805120_27805123del

Select item 148236602314.

rs1482366023 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 6:27837239 (GRCh38)
6:27805017 (GRCh37)
Canonical SPDI:: NC_000006.12:27837238:G:T
Gene:: H2BC15 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000006.12:g.27837239G>T, NC_000006.11:g.27805017G>T

Select item 148219917015.

rs1482199170 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 6:27838259 (GRCh38)
6:27806037 (GRCh37)
Canonical SPDI:: NC_000006.12:27838258:T:A
Gene:: H2AC15 (Varview), H2BC15 (Varview)
Functional Consequence:: coding_sequence_variant,2KB_upstream_variant,upstream_transcript_variant,synonymous_variant
HGVS:: NC_000006.12:g.27838259T>A, NC_000006.11:g.27806037T>A, NM_003510.3:c.81A>T, NM_003510.2:c.81A>T

Select item 148137923616.

rs1481379236 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 6:27838290 (GRCh38)
6:27806068 (GRCh37)
Canonical SPDI:: NC_000006.12:27838289:G:A
Gene:: H2AC15 (Varview), H2BC15 (Varview)
Functional Consequence:: coding_sequence_variant,2KB_upstream_variant,missense_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000006.12:g.27838290G>A, NC_000006.11:g.27806068G>A, NM_003510.3:c.50C>T, NM_003510.2:c.50C>T, NP_003501.1:p.Thr17Ile

Select item 148040057117.

rs1480400571 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 6:27837953 (GRCh38)
6:27805731 (GRCh37)
Canonical SPDI:: NC_000006.12:27837952:G:A
Gene:: H2AC15 (Varview), H2BC15 (Varview)
Functional Consequence:: coding_sequence_variant,2KB_upstream_variant,upstream_transcript_variant,synonymous_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000006.12:g.27837953G>A, NC_000006.11:g.27805731G>A, NM_003510.3:c.387C>T, NM_003510.2:c.387C>T

Select item 147885624818.

rs1478856248 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 6:27836951 (GRCh38)
6:27804729 (GRCh37)
Canonical SPDI:: NC_000006.12:27836950:A:C
Gene:: H2BC15 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.27836951A>C, NC_000006.11:g.27804729A>C

Select item 147866182219.

rs1478661822 [Homo sapiens]

Variant type:: DELINS
Alleles:: G>- [Show Flanks]
Chromosome:: 6:27838469 (GRCh38)
6:27806247 (GRCh37)
Canonical SPDI:: NC_000006.12:27838468:GGG:GG
Gene:: H2AC15 (Varview), H2BC15 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GG=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.27838471del, NC_000006.11:g.27806249del

Select item 147787251220.

rs1477872512 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 6:27837710 (GRCh38)
6:27805488 (GRCh37)
Canonical SPDI:: NC_000006.12:27837709:G:A,NC_000006.12:27837709:G:T
Gene:: H2AC15 (Varview), H2BC15 (Varview)
Functional Consequence:: 500B_downstream_variant,upstream_transcript_variant,2KB_upstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000106/2 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000446/2 (Estonian)
HGVS:: NC_000006.12:g.27837710G>A, NC_000006.12:g.27837710G>T, NC_000006.11:g.27805488G>A, NC_000006.11:g.27805488G>T

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