SNP Links for Gene (Select 8338) - SNP

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Select item 14896505841.

rs1489650584 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:149885129 (GRCh38)
1:149856679 (GRCh37)
Canonical SPDI:: NC_000001.11:149885128:C:T
Gene:: H2AC20 (Varview), H2BC21 (Varview)
Functional Consequence:: 3_prime_UTR_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000011/3 (TOPMED)
HGVS:: NC_000001.11:g.149885129C>T, NW_003871055.3:g.6700542C>T, NC_000001.10:g.149856679C>T, NM_003528.3:c.*1131G>A, NM_003528.2:c.*1131G>A

Select item 14872938022.

rs1487293802 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:149885508 (GRCh38)
1:149857058 (GRCh37)
Canonical SPDI:: NC_000001.11:149885507:C:T
Gene:: H2AC20 (Varview), H2BC21 (Varview)
Functional Consequence:: 3_prime_UTR_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000029/4 (GnomAD)
T=0.000038/10 (TOPMED)
HGVS:: NC_000001.11:g.149885508C>T, NW_003871055.3:g.6700921C>T, NC_000001.10:g.149857058C>T, NM_003528.3:c.*752G>A, NM_003528.2:c.*752G>A

Select item 14872804913.

rs1487280491 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 1:149886919 (GRCh38)
1:149858469 (GRCh37)
Canonical SPDI:: NC_000001.11:149886918:A:G
Gene:: H2AC20 (Varview), H2BC21 (Varview)
Functional Consequence:: upstream_transcript_variant,5_prime_UTR_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000011/3 (TOPMED)
HGVS:: NC_000001.11:g.149886919A>G, NW_003871055.3:g.6702332A>G, NC_000001.10:g.149858469A>G, NM_003517.3:c.-56A>G

Select item 14865916704.

rs1486591670 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: 1:149887138 (GRCh38)
1:149858688 (GRCh37)
Canonical SPDI:: NC_000001.11:149887137:T:C,NC_000001.11:149887137:T:G
Gene:: H2AC20 (Varview), H2BC21 (Varview), H2AC21 (Varview)
Functional Consequence:: 500B_downstream_variant,upstream_transcript_variant,coding_sequence_variant,downstream_transcript_variant,2KB_upstream_variant,missense_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000043/1 (ALFA)
C=0.000004/1 (GnomAD_exomes)
C=0.000004/1 (TOPMED)
G=0.001652/3 (Korea1K)
HGVS:: NC_000001.11:g.149887138T>C, NC_000001.11:g.149887138T>G, NW_003871055.3:g.6702551T>C, NW_003871055.3:g.6702551T>G, NC_000001.10:g.149858688T>C, NC_000001.10:g.149858688T>G, NM_003517.3:c.164T>C, NM_003517.3:c.164T>G, NM_003517.2:c.164T>C, NM_003517.2:c.164T>G, NP_003508.1:p.Val55Ala, NP_003508.1:p.Val55Gly

Select item 14862673215.

rs1486267321 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,G [Show Flanks]
Chromosome:: 1:149886858 (GRCh38)
1:149858408 (GRCh37)
Canonical SPDI:: NC_000001.11:149886857:A:C,NC_000001.11:149886857:A:G
Gene:: H2AC20 (Varview), H2BC21 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000011/3 (TOPMED)
C=0.000035/1 (TOMMO)
G=0.000156/1 (1000Genomes)
HGVS:: NC_000001.11:g.149886858A>C, NC_000001.11:g.149886858A>G, NW_003871055.3:g.6702271A>C, NW_003871055.3:g.6702271A>G, NC_000001.10:g.149858408A>C, NC_000001.10:g.149858408A>G

Select item 14858335906.

rs1485833590 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:149887461 (GRCh38)
1:149859011 (GRCh37)
Canonical SPDI:: NC_000001.11:149887460:T:C
Gene:: H2AC20 (Varview), H2BC21 (Varview), H2AC21 (Varview)
Functional Consequence:: 500B_downstream_variant,upstream_transcript_variant,downstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000015/4 (TOPMED)
C=0.000029/4 (GnomAD)
HGVS:: NC_000001.11:g.149887461T>C, NW_003871055.3:g.6702874T>C, NC_000001.10:g.149859011T>C

Select item 14856841617.

rs1485684161 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:149887506 (GRCh38)
1:149859056 (GRCh37)
Canonical SPDI:: NC_000001.11:149887505:T:C
Gene:: H2AC20 (Varview), H2BC21 (Varview), H2AC21 (Varview)
Functional Consequence:: 500B_downstream_variant,upstream_transcript_variant,3_prime_UTR_variant,downstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000008/2 (TOPMED)
HGVS:: NC_000001.11:g.149887506T>C, NW_003871055.3:g.6702919T>C, NC_000001.10:g.149859056T>C, NM_175065.3:c.*18A>G, NM_175065.2:c.*18A>G

Select item 14856152358.

rs1485615235 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:149887454 (GRCh38)
1:149859004 (GRCh37)
Canonical SPDI:: NC_000001.11:149887453:C:T
Gene:: H2AC20 (Varview), H2BC21 (Varview), H2AC21 (Varview)
Functional Consequence:: 500B_downstream_variant,upstream_transcript_variant,downstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.149887454C>T, NW_003871055.3:g.6702867C>T, NC_000001.10:g.149859004C>T

Select item 14848146939.

rs1484814693 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:149887850 (GRCh38)
1:149859400 (GRCh37)
Canonical SPDI:: NC_000001.11:149887849:C:T
Gene:: H2AC20 (Varview), H2BC21 (Varview), H2AC21 (Varview)
Functional Consequence:: 500B_downstream_variant,upstream_transcript_variant,coding_sequence_variant,downstream_transcript_variant,2KB_upstream_variant,missense_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000001.11:g.149887850C>T, NW_003871055.3:g.6703263C>T, NC_000001.10:g.149859400C>T, NM_175065.3:c.67G>A, NM_175065.2:c.67G>A, NP_778235.1:p.Gly23Ser

Select item 148389871910.

rs1483898719 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 1:149885980 (GRCh38)
1:149857530 (GRCh37)
Canonical SPDI:: NC_000001.11:149885979:C:G
Gene:: H2AC20 (Varview), H2BC21 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000011/3 (TOPMED)
G=0.000014/2 (GnomAD)
HGVS:: NC_000001.11:g.149885980C>G, NW_003871055.3:g.6701393C>G, NC_000001.10:g.149857530C>G, NM_003528.3:c.*280G>C, NM_003528.2:c.*280G>C

Select item 148324133111.

rs1483241331 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 1:149886779 (GRCh38)
1:149858329 (GRCh37)
Canonical SPDI:: NC_000001.11:149886778:T:A
Gene:: H2AC20 (Varview), H2BC21 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000011/3 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000001.11:g.149886779T>A, NW_003871055.3:g.6702192T>A, NC_000001.10:g.149858329T>A

Select item 148309029112.

rs1483090291 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 1:149885913 (GRCh38)
1:149857463 (GRCh37)
Canonical SPDI:: NC_000001.11:149885912:C:G
Gene:: H2AC20 (Varview), H2BC21 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
G=0.000014/2 (GnomAD)
HGVS:: NC_000001.11:g.149885913C>G, NW_003871055.3:g.6701326C>G, NC_000001.10:g.149857463C>G, NM_003528.3:c.*347G>C, NM_003528.2:c.*347G>C

Select item 148009802713.

rs1480098027 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 1:149885728 (GRCh38)
1:149857278 (GRCh37)
Canonical SPDI:: NC_000001.11:149885727:C:G
Gene:: H2AC20 (Varview), H2BC21 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000008/2 (TOPMED)
HGVS:: NC_000001.11:g.149885728C>G, NW_003871055.3:g.6701141C>G, NC_000001.10:g.149857278C>G, NM_003528.3:c.*532G>C, NM_003528.2:c.*532G>C

Select item 147911839514.

rs1479118395 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 1:149886143 (GRCh38)
1:149857693 (GRCh37)
Canonical SPDI:: NC_000001.11:149886142:C:G,NC_000001.11:149886142:C:T
Gene:: H2AC20 (Varview), H2BC21 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000001.11:g.149886143C>G, NC_000001.11:g.149886143C>T, NW_003871055.3:g.6701556C>G, NW_003871055.3:g.6701556C>T, NC_000001.10:g.149857693C>G, NC_000001.10:g.149857693C>T, NM_003528.3:c.*117G>C, NM_003528.3:c.*117G>A, NM_003528.2:c.*117G>C, NM_003528.2:c.*117G>A

Select item 147900561615.

rs1479005616 [Homo sapiens]

Variant type:: DEL
Alleles:: CT>- [Show Flanks]
Chromosome:: 1:149885095 (GRCh38)
1:149856645 (GRCh37)
Canonical SPDI:: NC_000001.11:149885094:CT:
Gene:: H2AC20 (Varview), H2BC21 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.000011/3 (TOPMED)
HGVS:: NC_000001.11:g.149885095_149885096del, NW_003871055.3:g.6700508_6700509del, NC_000001.10:g.149856645_149856646del, NM_003528.3:c.*1164_*1165del, NM_003528.2:c.*1164_*1165del

Select item 147734971016.

rs1477349710 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 1:149885230 (GRCh38)
1:149856780 (GRCh37)
Canonical SPDI:: NC_000001.11:149885229:T:G
Gene:: H2AC20 (Varview), H2BC21 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000026/7 (TOPMED)
G=0.000029/4 (GnomAD)
HGVS:: NC_000001.11:g.149885230T>G, NW_003871055.3:g.6700643T>G, NC_000001.10:g.149856780T>G, NM_003528.3:c.*1030A>C, NM_003528.2:c.*1030A>C

Select item 147676658717.

rs1476766587 [Homo sapiens]

Variant type:: DELINS
Alleles:: AGCG>-,AGCGAGCG [Show Flanks]
Chromosome:: 1:149886238 (GRCh38)
1:149857788 (GRCh37)
Canonical SPDI:: NC_000001.11:149886227:CGAGCGAGCGAGCG:CGAGCGAGCG,NC_000001.11:149886227:CGAGCGAGCGAGCG:CGAGCGAGCGAGCGAGCG
Gene:: H2AC20 (Varview), H2BC21 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CGAGCGAGCGAGCGAGCG=0./0 (ALFA)
-=0.000011/3 (TOPMED)
HGVS:: NC_000001.11:g.149886230AGCG[2], NC_000001.11:g.149886230AGCG[4], NW_003871055.3:g.6701643AGCG[2], NW_003871055.3:g.6701643AGCG[4], NC_000001.10:g.149857780AGCG[2], NC_000001.10:g.149857780AGCG[4], NM_003528.3:c.*21CTCG[2], NM_003528.3:c.*21CTCG[4], NM_003528.2:c.*21CTCG[2], NM_003528.2:c.*21CTCG[4]

Select item 147612852618.

rs1476128526 [Homo sapiens]

Variant type:: DELINS
Alleles:: CT>- [Show Flanks]
Chromosome:: 1:149886951 (GRCh38)
1:149858501 (GRCh37)
Canonical SPDI:: NC_000001.11:149886949:TCT:T
Gene:: H2AC20 (Varview), H2BC21 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,5_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
-=0.000004/1 (GnomAD_exomes)
-=0.000011/3 (TOPMED)
HGVS:: NC_000001.11:g.149886951_149886952del, NW_003871055.3:g.6702364_6702365del, NC_000001.10:g.149858501_149858502del, NM_003517.3:c.-24_-23del

Select item 147570155119.

rs1475701551 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: 1:149886062 (GRCh38)
1:149857612 (GRCh37)
Canonical SPDI:: NC_000001.11:149886061:T:C,NC_000001.11:149886061:T:G
Gene:: H2AC20 (Varview), H2BC21 (Varview)
Functional Consequence:: 3_prime_UTR_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000019/5 (TOPMED)
HGVS:: NC_000001.11:g.149886062T>C, NC_000001.11:g.149886062T>G, NW_003871055.3:g.6701475T>C, NW_003871055.3:g.6701475T>G, NC_000001.10:g.149857612T>C, NC_000001.10:g.149857612T>G, NM_003528.3:c.*198A>G, NM_003528.3:c.*198A>C, NM_003528.2:c.*198A>G, NM_003528.2:c.*198A>C

Select item 147366695620.

rs1473666956 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:149885476 (GRCh38)
1:149857026 (GRCh37)
Canonical SPDI:: NC_000001.11:149885475:C:T
Gene:: H2AC20 (Varview), H2BC21 (Varview)
Functional Consequence:: 3_prime_UTR_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000011/3 (TOPMED)
HGVS:: NC_000001.11:g.149885476C>T, NW_003871055.3:g.6700889C>T, NC_000001.10:g.149857026C>T, NM_003528.3:c.*784G>A, NM_003528.2:c.*784G>A

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