SNP Links for Gene (Select 83259) - SNP

Links from Gene

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Select item 14908384511.

rs1490838451 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: Y:5148974 (GRCh38)
Y:5017015 (GRCh37)
Canonical SPDI:: NC_000024.10:5148973:T:C
Gene:: PCDH11Y (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
HGVS:: NC_000024.10:g.5148974T>C, NC_000024.9:g.5017015T>C, NG_011652.1:g.153749T>C

Select item 14907831982.

rs1490783198 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: Y:5213237 (GRCh38)
Y:5081278 (GRCh37)
Canonical SPDI:: NC_000024.10:5213236:T:C
Gene:: PCDH11Y (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
HGVS:: NC_000024.10:g.5213237T>C, NC_000024.9:g.5081278T>C, NG_011652.1:g.218012T>C

Select item 14906763773.

rs1490676377 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: Y:5175700 (GRCh38)
Y:5043741 (GRCh37)
Canonical SPDI:: NC_000024.10:5175699:G:T
Gene:: PCDH11Y (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
HGVS:: NC_000024.10:g.5175700G>T, NC_000024.9:g.5043741G>T, NG_011652.1:g.180475G>T

Select item 14906199694.

rs1490619969 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: Y:5238231 (GRCh38)
Y:5106272 (GRCh37)
Canonical SPDI:: NC_000024.10:5238230:A:G
Gene:: PCDH11Y (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by cluster
MAF:: G=0.0281/43 (KOREAN)
HGVS:: NC_000024.10:g.5238231A>G, NC_000024.9:g.5106272A>G, NG_011652.1:g.243006A>G

Select item 14904869115.

rs1490486911 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: Y:5573319 (GRCh38)
Y:5441360 (GRCh37)
Canonical SPDI:: NC_000024.10:5573318:G:T
Gene:: PCDH11Y (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by cluster
MAF:: T=0.1387/223 (KOREAN)
HGVS:: NC_000024.10:g.5573319G>T, NC_000024.9:g.5441360G>T, NG_002937.5:g.331G>T, NG_011652.1:g.578094G>T

Select item 14903540356.

rs1490354035 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->G [Show Flanks]
Chromosome:: Y:5535263 (GRCh38)
Y:5403305 (GRCh37)
Canonical SPDI:: NC_000024.10:5535263:GGGG:GGGGG
Gene:: PCDH11Y (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by cluster
MAF:: G=0.00044/12 (GnomAD)
HGVS:: NC_000024.10:g.5535267dup, NC_000024.9:g.5403308dup, NG_011652.1:g.540042dup

Select item 14901871147.

rs1490187114 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: Y:5553042 (GRCh38)
Y:5421083 (GRCh37)
Canonical SPDI:: NC_000024.10:5553041:A:G
Gene:: PCDH11Y (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
HGVS:: NC_000024.10:g.5553042A>G, NC_000024.9:g.5421083A>G, NG_011652.1:g.557817A>G

Select item 14899107758.

rs1489910775 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: Y:5325840 (GRCh38)
Y:5193881 (GRCh37)
Canonical SPDI:: NC_000024.10:5325839:A:G
Gene:: PCDH11Y (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by cluster
MAF:: A=0./0 (SGDP_PRJ)
G=0.1098/170 (KOREAN)
HGVS:: NC_000024.10:g.5325840A>G, NC_000024.9:g.5193881A>G, NG_011652.1:g.330615A>G

Select item 14898030309.

rs1489803030 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: Y:5262241 (GRCh38)
Y:5130282 (GRCh37)
Canonical SPDI:: NC_000024.10:5262240:T:C
Gene:: PCDH11Y (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by cluster
MAF:: T=0./0 (SGDP_PRJ)
C=0.02376/38 (1000Genomes)
C=0.07425/2178 (GnomAD)
HGVS:: NC_000024.10:g.5262241T>C, NC_000024.9:g.5130282T>C, NG_011652.1:g.267016T>C

Select item 148950122510.

rs1489501225 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: Y:5326220 (GRCh38)
Y:5194261 (GRCh37)
Canonical SPDI:: NC_000024.10:5326219:C:G
Gene:: PCDH11Y (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by cluster
MAF:: G=0.00188/3 (1000Genomes)
G=0.00493/146 (GnomAD)
HGVS:: NC_000024.10:g.5326220C>G, NC_000024.9:g.5194261C>G, NG_011652.1:g.330995C>G

Select item 148946744811.

rs1489467448 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: Y:5279442 (GRCh38)
Y:5147483 (GRCh37)
Canonical SPDI:: NC_000024.10:5279441:G:A
Gene:: PCDH11Y (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by cluster
MAF:: A=0.0408/61 (KOREAN)
HGVS:: NC_000024.10:g.5279442G>A, NC_000024.9:g.5147483G>A, NG_011652.1:g.284217G>A

Select item 148921374012.

rs1489213740 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: Y:5618865 (GRCh38)
Y:5486906 (GRCh37)
Canonical SPDI:: NC_000024.10:5618864:A:G
Gene:: PCDH11Y (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by cluster
MAF:: A=0./0 (SGDP_PRJ)
G=0.0036/5 (KOREAN)
HGVS:: NC_000024.10:g.5618865A>G, NC_000024.9:g.5486906A>G, NG_011652.1:g.623640A>G

Select item 148912123313.

rs1489121233 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: Y:5681457 (GRCh38)
Y:5549498 (GRCh37)
Canonical SPDI:: NC_000024.10:5681456:A:G
Gene:: PCDH11Y (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
HGVS:: NC_000024.10:g.5681457A>G, NC_000024.9:g.5549498A>G, NG_011652.1:g.686232A>G

Select item 148886796314.

rs1488867963 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: Y:5135984 (GRCh38)
Y:5004025 (GRCh37)
Canonical SPDI:: NC_000024.10:5135983:C:A
Gene:: PCDH11Y (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by cluster
MAF:: A=0.2437/446 (KOREAN)
HGVS:: NC_000024.10:g.5135984C>A, NC_000024.9:g.5004025C>A, NG_011652.1:g.140759C>A

Select item 148881330815.

rs1488813308 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: Y:5105545 (GRCh38)
Y:4973586 (GRCh37)
Canonical SPDI:: NC_000024.10:5105544:T:G
Gene:: PCDH11Y (Varview)
Functional Consequence:: intron_variant,3_prime_UTR_variant
Validated:: by frequency,by cluster
MAF:: G=0.0115/17 (KOREAN)
HGVS:: NC_000024.10:g.5105545T>G, NC_000024.9:g.4973586T>G, NG_011652.1:g.110320T>G, NM_032972.3:c.*1184T>G, NM_032972.2:c.*1184T>G, NM_032971.3:c.*1184T>G, NM_032971.2:c.*1184T>G, NM_001278619.2:c.*1184T>G, NM_001278619.1:c.*1184T>G

Select item 148869401516.

rs1488694015 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: Y:5684673 (GRCh38)
Y:5552714 (GRCh37)
Canonical SPDI:: NC_000024.10:5684672:C:T
Gene:: PCDH11Y (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by cluster
MAF:: T=0.0006/1 (1000Genomes)
C=0.2755/27 (SGDP_PRJ)
T=0.2972/598 (KOREAN)
HGVS:: NC_000024.10:g.5684673C>T, NC_000024.9:g.5552714C>T, NG_011652.1:g.689448C>T

Select item 148866435217.

rs1488664352 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: Y:5626491 (GRCh38)
Y:5494532 (GRCh37)
Canonical SPDI:: NC_000024.10:5626490:T:C
Gene:: PCDH11Y (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by cluster
MAF:: C=0.00051/15 (GnomAD)
HGVS:: NC_000024.10:g.5626491T>C, NC_000024.9:g.5494532T>C, NG_011652.1:g.631266T>C

Select item 148862090118.

rs1488620901 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: Y:5489596 (GRCh38)
Y:5357637 (GRCh37)
Canonical SPDI:: NC_000024.10:5489595:T:A
Gene:: PCDH11Y (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by cluster
MAF:: A=0.0648/96 (KOREAN)
HGVS:: NC_000024.10:g.5489596T>A, NC_000024.9:g.5357637T>A, NG_011652.1:g.494371T>A

Select item 148842408919.

rs1488424089 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: Y:5339289 (GRCh38)
Y:5207330 (GRCh37)
Canonical SPDI:: NC_000024.10:5339288:C:A
Gene:: PCDH11Y (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
HGVS:: NC_000024.10:g.5339289C>A, NC_000024.9:g.5207330C>A, NG_011652.1:g.344064C>A

Select item 148809409720.

rs1488094097 [Homo sapiens]

Variant type:: DEL
Alleles:: TT>- [Show Flanks]
Chromosome:: Y:5358632 (GRCh38)
Y:5226673 (GRCh37)
Canonical SPDI:: NC_000024.10:5358631:TT:
Gene:: PCDH11Y (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
HGVS:: NC_000024.10:g.5358632_5358633del, NC_000024.9:g.5226673_5226674del, NG_011652.1:g.363407_363408del

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