SNP Links for Gene (Select 8287) - SNP

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Select item 14901013271.

rs1490101327 [Homo sapiens]

Variant type:: DELINS
Alleles:: GT>- [Show Flanks]
Chromosome:: Y:12775452 (GRCh38)
Y:14887386 (GRCh37)
Canonical SPDI:: NC_000024.10:12775450:TGT:T
Gene:: USP9Y (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency
MAF:: -=0.00002/1 (GnomAD_exomes)
HGVS:: NC_000024.10:g.12775452_12775453del, NC_000024.9:g.14887386_14887387del, NG_008311.2:g.79223_79224del, NG_008311.1:g.79227_79228del

Select item 14891550542.

rs1489155054 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: Y:12744089 (GRCh38)
Y:14856023 (GRCh37)
Canonical SPDI:: NC_000024.10:12744088:A:G
Gene:: USP9Y (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by cluster
MAF:: A=0./0 (SGDP_PRJ)
G=0.0511/76 (KOREAN)
HGVS:: NC_000024.10:g.12744089A>G, NC_000024.9:g.14856023A>G, NG_008311.2:g.47860A>G, NG_008311.1:g.47864A>G

Select item 14891243993.

rs1489124399 [Homo sapiens]

Variant type:: DELINS
Alleles:: T>-,TT [Show Flanks]
Chromosome:: Y:12705491 (GRCh38)
Y:14817420 (GRCh37)
Canonical SPDI:: NC_000024.10:12705490:TTTTTTTTTTTT:TTTTTTTTTTT,NC_000024.10:12705490:TTTTTTTTTTTT:TTTTTTTTTTTTT
Gene:: USP9Y (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by cluster
HGVS:: NC_000024.10:g.12705502del, NC_000024.10:g.12705502dup, NC_000024.9:g.14817431del, NC_000024.9:g.14817431dup, NG_008311.2:g.9273del, NG_008311.2:g.9273dup, NG_008311.1:g.9272del, NG_008311.1:g.9272dup

Select item 14891067244.

rs1489106724 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: Y:12837992 (GRCh38)
Y:14949918 (GRCh37)
Canonical SPDI:: NC_000024.10:12837991:T:C
Gene:: USP9Y (Varview)
Functional Consequence:: coding_sequence_variant,synonymous_variant
Validated:: by frequency
MAF:: C=0.00002/1 (GnomAD_exomes)
HGVS:: NC_000024.10:g.12837992T>C, NC_000024.9:g.14949918T>C, NG_008311.2:g.141763T>C, NG_008311.1:g.141759T>C, NM_004654.4:c.5277T>C, NM_004654.3:c.5277T>C, XM_047442772.1:c.5277T>C, XM_047442771.1:c.5043T>C

Select item 14881295925.

rs1488129592 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: Y:12841026 (GRCh38)
Y:14952952 (GRCh37)
Canonical SPDI:: NC_000024.10:12841025:G:A
Gene:: USP9Y (Varview)
Functional Consequence:: coding_sequence_variant,synonymous_variant
Validated:: by frequency,by alfa
MAF:: A=0.00084/4 (ALFA)
A=0.00003/2 (GnomAD_exomes)
HGVS:: NC_000024.10:g.12841026G>A, NC_000024.9:g.14952952G>A, NG_008311.2:g.144797G>A, NG_008311.1:g.144793G>A, NM_004654.4:c.6105G>A, NM_004654.3:c.6105G>A, XM_047442772.1:c.6105G>A, XM_047442771.1:c.5871G>A

Select item 14881294856.

rs1488129485 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: Y:12736915 (GRCh38)
Y:14848849 (GRCh37)
Canonical SPDI:: NC_000024.10:12736914:A:T
Gene:: USP9Y (Varview)
Functional Consequence:: intron_variant
HGVS:: NC_000024.10:g.12736915A>T, NC_000024.9:g.14848849A>T, NG_008311.2:g.40686A>T, NG_008311.1:g.40690A>T

Select item 14878116147.

rs1487811614 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: Y:12861226 (GRCh38)
Y:14973151 (GRCh37)
Canonical SPDI:: NC_000024.10:12861225:G:A
Gene:: USP9Y (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
HGVS:: NC_000024.10:g.12861226G>A, NC_000024.9:g.14973151G>A, NG_008311.2:g.164997G>A, NG_008311.1:g.164992G>A

Select item 14871938228.

rs1487193822 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTTG>-,TTTGTTTG,TTTGTTTGTTTG [Show Flanks]
Chromosome:: Y:12822881 (GRCh38)
Y:14934816 (GRCh37)
Canonical SPDI:: NC_000024.10:12822860:TTTGTTTGTTTGTTTGTTTGTTTG:TTTGTTTGTTTGTTTGTTTG,NC_000024.10:12822860:TTTGTTTGTTTGTTTGTTTGTTTG:TTTGTTTGTTTGTTTGTTTGTTTGTTTG,NC_000024.10:12822860:TTTGTTTGTTTGTTTGTTTGTTTG:TTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTG
Gene:: USP9Y (Varview)
Functional Consequence:: intron_variant
Validated:: by cluster
HGVS:: NC_000024.10:g.12822861TTTG[5], NC_000024.10:g.12822861TTTG[7], NC_000024.10:g.12822861TTTG[8], NC_000024.9:g.14934796TTTG[5], NC_000024.9:g.14934796TTTG[7], NC_000024.9:g.14934796TTTG[8], NG_008311.2:g.126632TTTG[5], NG_008311.2:g.126632TTTG[7], NG_008311.2:g.126632TTTG[8], NG_008311.1:g.126637TTTG[5], NG_008311.1:g.126637TTTG[7], NG_008311.1:g.126637TTTG[8]

Select item 14871451409.

rs1487145140 [Homo sapiens]

Variant type:: DELINS
Alleles:: ATCT>- [Show Flanks]
Chromosome:: Y:12767604 (GRCh38)
Y:14879534 (GRCh37)
Canonical SPDI:: NC_000024.10:12767602:TATCT:T
Gene:: USP9Y (Varview)
Functional Consequence:: intron_variant
HGVS:: NC_000024.10:g.12767604_12767607del, NC_000024.9:g.14879534_14879537del, NG_008311.2:g.71375_71378del, NG_008311.1:g.71375_71378del

Select item 148692499510.

rs1486924995 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: Y:12727741 (GRCh38)
Y:14839674 (GRCh37)
Canonical SPDI:: NC_000024.10:12727740:G:A
Gene:: USP9Y (Varview)
Functional Consequence:: intron_variant
HGVS:: NC_000024.10:g.12727741G>A, NC_000024.9:g.14839674G>A, NG_008311.2:g.31512G>A, NG_008311.1:g.31515G>A

Select item 148631093511.

rs1486310935 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: Y:12774290 (GRCh38)
Y:14886224 (GRCh37)
Canonical SPDI:: NC_000024.10:12774289:G:A
Gene:: USP9Y (Varview)
Functional Consequence:: intron_variant
HGVS:: NC_000024.10:g.12774290G>A, NC_000024.9:g.14886224G>A, NG_008311.2:g.78061G>A, NG_008311.1:g.78065G>A

Select item 148618118712.

rs1486181187 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: Y:12805018 (GRCh38)
Y:14916951 (GRCh37)
Canonical SPDI:: NC_000024.10:12805017:A:G
Gene:: USP9Y (Varview)
Functional Consequence:: intron_variant
HGVS:: NC_000024.10:g.12805018A>G, NC_000024.9:g.14916951A>G, NG_008311.2:g.108789A>G, NG_008311.1:g.108792A>G

Select item 148488651313.

rs1484886513 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: Y:12847285 (GRCh38)
Y:14959210 (GRCh37)
Canonical SPDI:: NC_000024.10:12847284:T:G
Gene:: USP9Y (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant
Validated:: by frequency
MAF:: G=0.00001/1 (GnomAD_exomes)
HGVS:: NC_000024.10:g.12847285T>G, NC_000024.9:g.14959210T>G, NG_008311.2:g.151056T>G, NG_008311.1:g.151051T>G, NM_004654.4:c.7022T>G, NM_004654.3:c.7022T>G, XM_047442772.1:c.7022T>G, XM_047442771.1:c.6788T>G, NP_004645.2:p.Leu2341Arg, XP_047298728.1:p.Leu2341Arg, XP_047298727.1:p.Leu2263Arg

Select item 148487459514.

rs1484874595 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: Y:12856806 (GRCh38)
Y:14968731 (GRCh37)
Canonical SPDI:: NC_000024.10:12856805:G:A
Gene:: USP9Y (Varview)
Functional Consequence:: coding_sequence_variant,synonymous_variant
Validated:: by frequency
MAF:: A=0.00002/1 (GnomAD_exomes)
HGVS:: NC_000024.10:g.12856806G>A, NC_000024.9:g.14968731G>A, NG_008311.2:g.160577G>A, NG_008311.1:g.160572G>A, NM_004654.4:c.7395G>A, NM_004654.3:c.7395G>A, XM_047442772.1:c.7395G>A, XM_047442771.1:c.7161G>A

Select item 148462318215.

rs1484623182 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: Y:12726768 (GRCh38)
Y:14838701 (GRCh37)
Canonical SPDI:: NC_000024.10:12726767:G:A
Gene:: USP9Y (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant
Validated:: by frequency
MAF:: A=0.00001/1 (GnomAD_exomes)
HGVS:: NC_000024.10:g.12726768G>A, NC_000024.9:g.14838701G>A, NG_008311.2:g.30539G>A, NG_008311.1:g.30542G>A, NM_004654.4:c.632G>A, NM_004654.3:c.632G>A, XM_047442772.1:c.632G>A, XM_047442771.1:c.398G>A, NP_004645.2:p.Arg211His, XP_047298728.1:p.Arg211His, XP_047298727.1:p.Arg133His

Select item 148419194816.

rs1484191948 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: Y:12757367 (GRCh38)
Y:14869297 (GRCh37)
Canonical SPDI:: NC_000024.10:12757366:A:C
Gene:: USP9Y (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant
Validated:: by frequency
MAF:: C=0.00001/1 (GnomAD_exomes)
HGVS:: NC_000024.10:g.12757367A>C, NC_000024.9:g.14869297A>C, NG_008311.2:g.61138A>C, NG_008311.1:g.61138A>C, NM_004654.4:c.1598A>C, NM_004654.3:c.1598A>C, XM_047442772.1:c.1598A>C, XM_047442771.1:c.1364A>C, NP_004645.2:p.His533Pro, XP_047298728.1:p.His533Pro, XP_047298727.1:p.His455Pro

Select item 148389388017.

rs1483893880 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: Y:12725661 (GRCh38)
Y:14837594 (GRCh37)
Canonical SPDI:: NC_000024.10:12725660:A:G
Gene:: USP9Y (Varview)
Functional Consequence:: intron_variant
HGVS:: NC_000024.10:g.12725661A>G, NC_000024.9:g.14837594A>G, NG_008311.2:g.29432A>G, NG_008311.1:g.29435A>G

Select item 148193315218.

rs1481933152 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: Y:12797315 (GRCh38)
Y:14909248 (GRCh37)
Canonical SPDI:: NC_000024.10:12797314:C:T
Gene:: USP9Y (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by cluster
MAF:: T=0.0795/120 (KOREAN)
HGVS:: NC_000024.10:g.12797315C>T, NC_000024.9:g.14909248C>T, NG_008311.2:g.101086C>T, NG_008311.1:g.101089C>T

Select item 148095959819.

rs1480959598 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: Y:12810302 (GRCh38)
Y:14922237 (GRCh37)
Canonical SPDI:: NC_000024.10:12810301:A:G
Gene:: USP9Y (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency
MAF:: G=0.00001/1 (GnomAD_exomes)
HGVS:: NC_000024.10:g.12810302A>G, NC_000024.9:g.14922237A>G, NG_008311.2:g.114073A>G, NG_008311.1:g.114078A>G

Select item 147999062820.

rs1479990628 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: Y:12773678 (GRCh38)
Y:14885612 (GRCh37)
Canonical SPDI:: NC_000024.10:12773677:G:A
Gene:: USP9Y (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant
Validated:: by frequency
MAF:: A=0.00001/1 (GnomAD_exomes)
HGVS:: NC_000024.10:g.12773678G>A, NC_000024.9:g.14885612G>A, NG_008311.2:g.77449G>A, NG_008311.1:g.77453G>A, NM_004654.4:c.2084G>A, NM_004654.3:c.2084G>A, XM_047442772.1:c.2084G>A, XM_047442771.1:c.1850G>A, NP_004645.2:p.Arg695His, XP_047298728.1:p.Arg695His, XP_047298727.1:p.Arg617His

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