SNP Links for Gene (Select 81572) - SNP

Links from Gene

Items: 1 to 20 of 2319

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Select item 14905528211.

rs1490552821 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 20:31948884 (GRCh38)
20:30536687 (GRCh37)
Canonical SPDI:: NC_000020.11:31948883:T:G
Gene:: PDRG1 (Varview)
Functional Consequence:: splice_acceptor_variant
Validated:: by frequency
MAF:: G=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000020.11:g.31948884T>G, NC_000020.10:g.30536687T>G

Select item 14904310622.

rs1490431062 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 20:31948179 (GRCh38)
20:30535982 (GRCh37)
Canonical SPDI:: NC_000020.11:31948178:T:C
Gene:: PDRG1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000008/2 (TOPMED)
HGVS:: NC_000020.11:g.31948179T>C, NC_000020.10:g.30535982T>C

Select item 14903405303.

rs1490340530 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 20:31953489 (GRCh38)
20:30541292 (GRCh37)
Canonical SPDI:: NC_000020.11:31953488:C:G,NC_000020.11:31953488:C:T
Gene:: PDRG1 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000011/3 (TOPMED)
HGVS:: NC_000020.11:g.31953489C>G, NC_000020.11:g.31953489C>T, NC_000020.10:g.30541292C>G, NC_000020.10:g.30541292C>T

Select item 14897311214.

rs1489731121 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 20:31953351 (GRCh38)
20:30541154 (GRCh37)
Canonical SPDI:: NC_000020.11:31953350:T:G
Gene:: PDRG1 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000020.11:g.31953351T>G, NC_000020.10:g.30541154T>G

Select item 14895200075.

rs1489520007 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 20:31950983 (GRCh38)
20:30538786 (GRCh37)
Canonical SPDI:: NC_000020.11:31950982:G:A
Gene:: PDRG1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000020.11:g.31950983G>A, NC_000020.10:g.30538786G>A

Select item 14887987856.

rs1488798785 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 20:31946290 (GRCh38)
20:30534093 (GRCh37)
Canonical SPDI:: NC_000020.11:31946289:T:C
Gene:: PDRG1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000019/5 (TOPMED)
HGVS:: NC_000020.11:g.31946290T>C, NC_000020.10:g.30534093T>C

Select item 14883667997.

rs1488366799 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 20:31953592 (GRCh38)
20:30541395 (GRCh37)
Canonical SPDI:: NC_000020.11:31953591:A:G
Gene:: PDRG1 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000011/3 (TOPMED)
HGVS:: NC_000020.11:g.31953592A>G, NC_000020.10:g.30541395A>G

Select item 14872548688.

rs1487254868 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 20:31951892 (GRCh38)
20:30539695 (GRCh37)
Canonical SPDI:: NC_000020.11:31951891:G:A
Gene:: PDRG1 (Varview)
Functional Consequence:: synonymous_variant,coding_sequence_variant
HGVS:: NC_000020.11:g.31951892G>A, NC_000020.10:g.30539695G>A, NM_030815.3:c.70C>T, NM_030815.2:c.70C>T

Select item 14872546059.

rs1487254605 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 20:31947837 (GRCh38)
20:30535640 (GRCh37)
Canonical SPDI:: NC_000020.11:31947836:C:A
Gene:: PDRG1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000014/2 (GnomAD)
A=0.000023/6 (TOPMED)
HGVS:: NC_000020.11:g.31947837C>A, NC_000020.10:g.30535640C>A

Select item 148716211810.

rs1487162118 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 20:31946752 (GRCh38)
20:30534555 (GRCh37)
Canonical SPDI:: NC_000020.11:31946751:A:G
Gene:: PDRG1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000020.11:g.31946752A>G, NC_000020.10:g.30534555A>G

Select item 148687885311.

rs1486878853 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 20:31945430 (GRCh38)
20:30533233 (GRCh37)
Canonical SPDI:: NC_000020.11:31945429:C:T
Gene:: PDRG1 (Varview), TTLL9 (Varview)
Functional Consequence:: 500B_downstream_variant,3_prime_UTR_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000020.11:g.31945430C>T, NC_000020.10:g.30533233C>T, NM_030815.3:c.*377G>A, NM_030815.2:c.*377G>A

Select item 148673595312.

rs1486735953 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 20:31944540 (GRCh38)
20:30532343 (GRCh37)
Canonical SPDI:: NC_000020.11:31944539:C:T
Gene:: PDRG1 (Varview), TTLL9 (Varview)
Functional Consequence:: non_coding_transcript_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: T=0.000071/1 (ALFA)
T=0.000015/4 (TOPMED)
HGVS:: NC_000020.11:g.31944540C>T, NC_000020.10:g.30532343C>T, NM_001008409.5:c.*1519C>T, NM_001008409.4:c.*1519C>T, NM_001008409.3:c.*1519C>T, NR_134519.4:n.2418C>T, NR_134519.3:n.2418C>T, NR_134519.2:n.2415C>T, NR_134519.1:n.2350C>T, NR_148011.3:n.3555C>T, NR_148011.2:n.3555C>T, NR_148011.1:n.3552C>T, NR_148014.3:n.2468C>T, NR_148014.2:n.2468C>T, NR_148014.1:n.2465C>T, NR_148012.3:n.2327C>T, NR_148012.2:n.2327C>T, NR_148012.1:n.2324C>T, NR_148013.3:n.2270C>T, NR_148013.2:n.2270C>T, NR_148013.1:n.2267C>T, NR_148010.3:n.2006C>T, NR_148010.2:n.2006C>T, NR_148010.1:n.2003C>T, NM_030815.3:c.*1267G>A, NM_001367620.2:c.*1519C>T, NM_001367620.1:c.*1519C>T, NR_160276.2:n.2006C>T, NR_160276.1:n.2006C>T, NR_160277.2:n.1768C>T, NR_160277.1:n.1768C>T

Select item 148666153813.

rs1486661538 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 20:31951845 (GRCh38)
20:30539648 (GRCh37)
Canonical SPDI:: NC_000020.11:31951844:A:C
Gene:: PDRG1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000020.11:g.31951845A>C, NC_000020.10:g.30539648A>C

Select item 148651584814.

rs1486515848 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 20:31948435 (GRCh38)
20:30536238 (GRCh37)
Canonical SPDI:: NC_000020.11:31948434:T:C
Gene:: PDRG1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000020.11:g.31948435T>C, NC_000020.10:g.30536238T>C

Select item 148646443215.

rs1486464432 [Homo sapiens]

Variant type:: DELINS
Alleles:: TAATGTCTCAGA>- [Show Flanks]
Chromosome:: 20:31947382 (GRCh38)
20:30535185 (GRCh37)
Canonical SPDI:: NC_000020.11:31947379:GATAATGTCTCAGA:GA
Gene:: PDRG1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GA=0./0 (ALFA)
-=0.000007/1 (GnomAD)
-=0.000011/3 (TOPMED)
HGVS:: NC_000020.11:g.31947382_31947393del, NC_000020.10:g.30535185_30535196del

Select item 148565898416.

rs1485658984 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 20:31946280 (GRCh38)
20:30534083 (GRCh37)
Canonical SPDI:: NC_000020.11:31946279:G:A,NC_000020.11:31946279:G:C
Gene:: PDRG1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000020.11:g.31946280G>A, NC_000020.11:g.31946280G>C, NC_000020.10:g.30534083G>A, NC_000020.10:g.30534083G>C

Select item 148514987817.

rs1485149878 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 20:31952557 (GRCh38)
20:30540360 (GRCh37)
Canonical SPDI:: NC_000020.11:31952556:G:T
Gene:: PDRG1 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000014/2 (GnomAD)
T=0.000015/4 (TOPMED)
HGVS:: NC_000020.11:g.31952557G>T, NC_000020.10:g.30540360G>T

Select item 148495195618.

rs1484951956 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 20:31949888 (GRCh38)
20:30537691 (GRCh37)
Canonical SPDI:: NC_000020.11:31949887:T:C
Gene:: PDRG1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000015/4 (TOPMED)
C=0.000029/4 (GnomAD)
HGVS:: NC_000020.11:g.31949888T>C, NC_000020.10:g.30537691T>C

Select item 148472495619.

rs1484724956 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,G [Show Flanks]
Chromosome:: 20:31952195 (GRCh38)
20:30539998 (GRCh37)
Canonical SPDI:: NC_000020.11:31952194:T:A,NC_000020.11:31952194:T:G
Gene:: PDRG1 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000020.11:g.31952195T>A, NC_000020.11:g.31952195T>G, NC_000020.10:g.30539998T>A, NC_000020.10:g.30539998T>G

Select item 148451618520.

rs1484516185 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 20:31946392 (GRCh38)
20:30534195 (GRCh37)
Canonical SPDI:: NC_000020.11:31946391:G:A
Gene:: PDRG1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000015/4 (TOPMED)
HGVS:: NC_000020.11:g.31946392G>A, NC_000020.10:g.30534195G>A

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